Education and data-intensive science in the beginning of the 21st century

Data-intensive science will open up new avenues to explore, new questions to ask, and new ways to answer. Yet, this potential cannot be unlocked without new emphasis on education of the researchers gathering data, the analysts analyzing data and the cross-disciplinary participants working together to make it happen. This article is a summary of the education issues and challenges of data-intensive sciences and cloud computing as discussed in the Data-Intensive Science (DIS) workshop in Seattle, September 19-20, 2010.     

Communication and data-intensive science in the beginning of the 21st century

The advent of data-intensive science has sharpened our need for better communication within and between the fields of science and technology, to name a few. No one mind can encompass all that is necessary to be successful in controlling and analyzing the data deluge we are experiencing. Therefore, we must bring together diverse fields, communicate clearly, and build crossdisciplinary methods and tools to realize its potential. This article is a summary of the communication issues and challenges as discussed in the Data-Intensive Science (DIS) workshop in Seattle, September 19-20, 2010.     

Technology and data-intensive science in the beginning of the 21st century

This article is a summary of the technology issues and challenges of data-intensive science and cloud computing as discussed in the Data-Intensive Science (DIS) workshop in Seattle, September 19-20, 2010.     

Gap junction channel structure in the early 21st century: facts and fantasies

Gap junction channels connect the cytoplasms of adjacent cells through the end-to-end docking of single-membrane structures called connexons, formed by a ring of six connexin monomers. Each monomer contains four transmembrane alpha-helices, for a total of 24 alpha-helices in a connexon. The fundamental structure of the connexon pore is probably similar in unpaired connexons and junctional channels, and for channels formed by different connexin isoforms. Nevertheless, variability in results from structurally focused mutagenesis and electrophysiological studies raise uncertainty about the specific assignments of the transmembrane helices. Mapping of human mutations onto a suggested C(alpha) model predicts that mutations that disrupt helix-helix packing impair channel function. An experimentally determined structure at atomic resolution will be essential to confirm and resolve these concepts.     

Policy and data-intensive scientific discovery in the beginning of the 21st century

Recent developments in our ability to capture, curate, and analyze data, the field of data-intensive science (DIS), have indeed made these interesting and challenging times for scientific practice as well as policy making in real time. We are confronted with immense datasets that challenge our ability to pool, transfer, analyze, or interpret scientific observations. We have more data available than ever before, yet more questions to be answered as well, and no clear path to answer them. We are excited by the potential for science-based solutions to humankind's problems, yet stymied by the limitations of our current cyberinfrastructure and existing public policies. Importantly, DIS signals a transformation of the hypothesis-driven tradition of science ("first hypothesize, then experiment") to one that is typified by "first experiment, then hypothesize" mode of discovery. Another hallmark of DIS is that it amasses data that are public goods (i.e., creates a "commons") that can further be creatively mined for various applications in different sectors. As such, this calls for a science policy vision that is long term. We herein reflect on how best to approach to policy making at this critical inflection point when DIS applications are being diversified in agriculture, ecology, marine biology, and environmental research internationally. This article outlines the key policy issues and gaps that emerged from the multidisciplinary discussions at the NSF-funded DIS workshop held at the Seattle Children's Research Institute in Seattle, on September 19-20, 2010.     

The burden of cervical cancer in south-east Europe at the beginning of the 21st century

The situation of cervical cancer prevention in South-East Europe is hardly documented, in spite of the fact that it encloses the most affected countries of Europe. We estimated the number of cases of cervical cancer, the number of deaths from this malignancy and the corresponding rates for 11 countries located in South-East Europe, in the period 2002-2004. Each year, approximately 9,000 women develop cervical cancer and about 4,600 die from the disease in this subcontinent. The most affected country is Romania with almost 3,500 cases and more than 2,000 deaths per year High world-age standardised mortality rates (> 7.5 [expressed per 100,000 women-years]) are observed in 7 countries: FYROM (7.6), Moldova (7.8), Bulgaria (8.0), Bosnia & Herzegovina (8.0), Albania (9.8), Serbia & Montenegro (10.1) and Romania (13.0). A matter of concern is the increasing mortality rate, in younger women, in the countries with the highest burden of cervical cancer. Thus, appropriate cervical cancer prevention programmes should be set up without delay in this part of Europe.     

Bioinformatics and data-intensive scientific discovery in the beginning of the 21st century

This article is a summary of the bioinformatics issues and challenges of data-intensive science as discussed in the NSF-funded Data-Intensive Science (DIS) workshop in Seattle, September 19-20, 2010.     

Biology and data-intensive scientific discovery in the beginning of the 21st century

The life sciences are poised at the beginning of a paradigm-changing evolution in the way scientific questions are answered. Data-Intensive Science (DIS) promise to provide new ways of approaching scientific challenges and answering questions. This article is a summary of the life sciences issues and challenges as discussed in the DIS workshop in Seattle, September 19-20, 2010.     

Interdisciplinarity to reconstruct historical introductions: solving the status of cryptogenic crayfish

Anciently introduced species can be confounded with native species because introduction pre‐dates the first species inventories or because of the loss of the collective memory of the introductions. The term ‘cryptogenic species’ denotes species of unknown or unclear status (native versus non‐native) in a given territory, and disciplinary approaches are often insufficient for solving their true status. Here, we follow an integrative, multidisciplinary approach to solve the status of a cryptogenic species, proposing that building on evidence from multiple disciplines can produce robust and clarifying insights. We undertook an exhaustive review of information on a putatively native crayfish (Austropotamobius italicus) in Spain. The reviewed information included taxonomy, genetics and phylogeography, history, archaeology, linguistics, biogeography, ecology, symbiotic organisms and even gastronomy and pharmacy. The knowledge produced by different scientific disciplines converges to indicate that A. italicus is a non‐native species in Spain. Historical documents even identify the first introduction event: crayfish were shipped from Italy to Spain in 1588 as a diplomatic gift from Francesco I de' Medici to King Philip II of Spain. Previous discussions on the status of A. italicus focussed on inconclusive and often confusing genetic results and excluded the rich and clarifying evidence available from other approaches and disciplines. Interdisciplinarity is an often‐invoked but rarely implemented practice in an academic environment that increasingly promotes narrow‐focussed specialization. Our review shows that the integration of disciplines can surpass disciplinary approaches in solving scientific controversies. Our results have straightforward implications for strategies to conserve biological diversity in Spain and Europe, urging a debate on the appropriateness of devoting conservation efforts to non‐native species.     

The countries and languages that dominate biological research at the beginning of the 21st century

Traditionally, studies of scientific productivity are biased in two ways: they are based on Current Contents, an index centered in British and American journals, and they seldom correct for population size, ignoring the relative effort that each society places in research. We studied national productivity for biology using a more representative index, the Biological Abstracts, and analyzed both total and relative productivity. English dominates biological publications with 87% (no other individual language reaches 2%). If the USA is considered a region by itself, it occupies the first place in per capita production of biology papers, with at least twice the productivity of either Asia or Europe. Canada, Oceania and Latin America occupy an intermediate position. The global output of scientific papers is dominated by Europe, USA. Japan, Canada, China and India. When corrected for population size, the countries with the greatest productivity of biology papers are the Nordic nations, Israel, Switzerland, Netherlands, Australia, Saint Lucia and Montserrat. The predominance of English as the language of biological research found in this study shows a continuation of the trend initiated around the year 1900. The large relative productivity of the USA reflects the importance that American society gives to science as the basis for technological and economic development, but the USA's share of total scientific output has decreased from 44% in 1983 to 34% in 2002, while there is a greater growth of science in India, Japan and Latin America, among others. The increasing share obtained by China and India may reflect a recent change in attitude towards funding science. The leadership of Nordic nations, Israel, Switzerland, Netherlands and Australia can be explained by cultural attitude. Apparently, a positive trend is emerging in Latin America, where Chile improved its ranking in per capita productivity but Argentina, Costa Rica, Uruguay, Brazil and Cuba fell. Nevertheless, the most productive countries in total number of papers are Brazil, Mexico and Argentina: large countries with a long tradition of funding scientific research.     

Taxonomic composition and abundance of macrozoobenthos in the Rybinsk Reservoir at the beginning of the 21st century

The structure of macrozoobenthos has been studied in the deep-water part of the Rybinsk Reservoir. A total of 73 species of bottom macroinvertebrates have been recorded, the majority of which are mollusks, oligochaetes, and chironomids. The macrozoobenthos on gray silts of channel parts of the reservoir was the richest in taxonomic composition and quantitative abundance. The maximum number of species has been recorded in the former mouth of the Mologa River, and the highest abundance of macrozoobenthos has been recorded near the village of Breitovo in June. Most of the macrozoobenthos is made up of oligochaetes and chironomid larvae; midge larvae dominate by biomass. Compared to the end of the 20th century, changes in the taxonomic composition and in dominating species of macrozoobenthos are observed.     

Pregnancy outcome is associated with maternal marital status in Austria--even at the beginning of the 21st century

Human reproduction is a biological phenomenon, however, sociocultural factors such as marital status influence pregnancy outcome and reproductive success. In the present study the impact of maternal marital status on pregnancy outcome was tested for all births, which had taken place in Austria between 1999 and 2004, which met the following criteria: single births, nulliparity, mothers older than 19 years (n = 179 830). The rate of preterm delivery (< 37 beginning weeks of gestation) and rate of low birth weight (< 2500 g) among term births were significantly higher among unmarried mothers in comparison to married mothers. Additionally the newborns of unmarried mothers were significantly lighter and shorter than those of married mothers. This was especially true of immigrant mothers. No significant differences between married and unmarried mothers were found regarding mode of delivery. Even at the beginning of the 21st century unmarried status represents an important stress factor for pregnant women.     

Impact of 21st century climate change on the Baltic Sea fish community and fisheries

The Baltic Sea is a large brackish semienclosed sea whose species-poor fish community supports important commercial and recreational fisheries. Both the fish species and the fisheries are strongly affected by climate variations. These climatic effects and the underlying mechanisms are briefly reviewed. We then use recent regional – scale climate – ocean modelling results to consider how climate change during this century will affect the fish community of the Baltic and fisheries management. Expected climate changes in northern Europe will likely affect both the temperature and salinity of the Baltic, causing it to become warmer and fresher. As an estuarine ecosystem with large horizontal and vertical salinity gradients, biodiversity will be particularly sensitive to changes in salinity which can be expected as a consequence of altered precipitation patterns. Marine-tolerant species will be disadvantaged and their distributions will partially contract from the Baltic Sea; habitats of freshwater species will likely expand. Although some new species can be expected to immigrate because of an expected increase in sea temperature, only a few of these species will be able to successfully colonize the Baltic because of its low salinity. Fishing fleets which presently target marine species (e.g. cod, herring, sprat, plaice, sole) in the Baltic will likely have to relocate to more marine areas or switch to other species which tolerate decreasing salinities. Fishery management thresholds that trigger reductions in fishing quotas or fishery closures to conserve local populations (e.g. cod, salmon) will have to be reassessed as the ecological basis on which existing thresholds have been established changes, and new thresholds will have to be developed for immigrant species. The Baltic situation illustrates some of the uncertainties and complexities associated with forecasting how fish populations, communities and industries dependent on an estuarine ecosystem might respond to future climate change.     

面对21世纪的中国植物园

在总结中国植物园发展历史及当前国际植物园发展趋势的基础上,论述了中国植物园面对对世纪所必须重视的5个方面。（1）植物园整体质量和特征化,作者列举了10个方面的差距。（2）药用植物的栽培、利用和保护。从药用植物分类学研究,有效成分的分析及动态研究,药用植物栽培化和“地道药材”问题4个方面论述植物园的优势和潜力。阐明了“栽培化”的涵义。（3）引种和物种保护,指出广泛引种的重要性和重点种类迁地保护的必要性,并首次提出了“濒危生境”这个术语及其概念。指出了未来引种理论研究的方向及其对农业生产的意义。（4）活植物收集圃信息系统。（5）科普教育。作者认为,虽然不少植物园目前还面临着或多或少的困难,但就整体而言,未来的10年将是植物园继续较大发展的10年。     

Plant cytogenetics at the dawn of the 21st century

The years 1996-1997 saw advances in plant chromosome handling, structure, behaviour and manipulation. Improved protocols were developed for flow sorting, microdissection and microcloning. Fibre FISH was used to map a range of DNA sequences at a resolution of a few kilobases. Over 400 wheat deletion stocks were reported and healing of broken chromosomes by de novo addition of telomeric sequences was demonstrated. Centromeric DNA sequences were identified. The role of telomeric ends in pairing was demonstrated. Apparently unusually long chromosome arms can interfere with mitosis. Novel phenomena and potential of wide hybrids for genome analysis were noteworthy.