Two new species of Kladnostrobus nov. gen. and their spores from the Pennsylvanian of the Kladno-Rakovník Basin (Bolsovian, Czech Republic)

A new lycopsid family Kladnostrobaceae is proposed, based on the type of sporangia, their attachment by a pedicel and the type of reticulate spores enclosed. All these characteristics distinguish the Kladnostrobaceae from all other lycopsid families. A new lycopsid genus Kladnostrobus nov. gen., consisting of two new species Kladnostrobus clealii nov. sp. and Kladnostrobus psendae nov. sp., is described from the Kladno-Rakovník Basin (Lower Bolsovian) of the central and western Carboniferous continental basins of the Czech Republic. Helically arranged distal laminae and pedicels are relatively primitive, suggesting that Kladnostrobus may represent a new, primitive type of lycopsid cone produced by some unknown, probably arborescent lycopsid parent plant. Spores of Kladnostrobus are about 90-100 μm in diameter, and possess reticulate sculpture. The proximal contact area of spores is laevigate. In situ spores can resemble some dispersed species of the genera Convolutispora Hoffmeister, Staplin and Malloy, Camptotriletes (Naumova) Potonié and Kremp, Reticulatisporites (Ibrahim) Neves and mainly Dictyotriletes (Naumova) Smith and Buttterworth.     

Lodetiella magnifica nov. gen. and nov. sp. (Insecta: Palaeodictyoptera; Permian), an extreme situation in wing morphology of palaeopterous insects

Based on published data and review of Mecynoptera splendida Handlirsch, 1904, a wing venation ground plan applicable to most taxa of the Palaeozoic superorder Palaeodictyopteroidea is proposed, where each major vein system has a simple anterior sector, and, primitively, a dichotomously branched posterior sector. Lodetiella magnifica nov. gen. and sp. is described, based on an isolated hind wing from the Salagou Formation (Middle to Late Permian; Hérault, France). The venation of Lodetiella magnifica conforms to the predicted ground plan, but differs by its simple posterior cubitus sector. This character is diagnostic of the family Calvertiellidae (Palaeodictyoptera), whose diagnosis is updated. Wing movement in flight is inferred from the peculiar wing vein organization of Lodetiella magnifica. Some ecological preferences might explain the relative rarity of calvertiellids in the fossil record.     

Description of Brenneria roseae sp. nov. and two subspecies, Brenneria roseae subspecies roseae ssp. nov and Brenneria roseae subspecies americana ssp. nov. isolated from symptomatic oak

Gram-negative, facultatively anaerobic bacteria were isolated from symptomatic oak tissue in the UK and USA. Partial gyrB sequencing placed ten strains in the genus Brenneria, with B. goodwinii as the closest phylogenetic relative. The strains were investigated further using a polyphasic approach including MLSA (based on partial gyrB, rpoB, infB and atpD gene sequences), 16S rRNA gene sequencing, DNA–DNA relatedness studies and both phenotypic and chemotaxonomic assays. The MLSA and 16S rRNA gene analyses separated the strains into two groups based on origin, suggesting that they belong to Brenneria as two novel species. However, the DNA–DNA relatedness values revealed a closer relationship between the groups and indicated that they should belong to the same species. As the two groups of strains from the UK and USA can be differentiated from each other phenotypically and by ERIC PCR fingerprints, it is proposed to classify them as novel subspecies of a novel Brenneria species. The name Brenneria roseae sp. nov. (FRB 222^T = LMG 27714^T = NCPPB 4581^T) is proposed, with Brenneria roseae subsp. roseae ssp. nov. (FRB 222^T = LMG 27714^T = NCPPB 4581^T) for the strains from the UK and Brenneria roseae subsp. americana ssp. nov. (FRB 223^T = LMG 27715^T = NCPPB 4582^T) for the strains from the USA.     

Kocuria uropygioeca sp. nov. and Kocuria uropygialis sp. nov., isolated from the preen glands of Great Spotted Woodpeckers (Dendrocopos major)

Two new species of Gram-positive cocci were isolated from the uropygial glands of wild woodpeckers (Dendrocopos major) originating from different locations in Germany. A polyphasic approach confirmed the affiliation of the isolates to the genus Kocuria. Phylogenetic analysis based on the 16S rRNA gene showed high degree of similarity to Kocuria koreensis DSM 23367^T (99.0% for both isolates). However, low ANIb values of <80% unequivocally separated the new species from K. koreensis. This finding was further corroborated by DNA fingerprinting and analysis of polar lipid profiles. Furthermore, growth characteristics, biochemical tests, MALDI-TOF MS analysis, and G + C contents clearly differentiated the isolates from their known relatives. Besides, the woodpecker isolates significantly differed from each other in their whole-cell protein profiles, DNA fingerprints, and ANIb values. In conclusion, the isolated microorganisms constitute members of two new species, for which the names Kocuria uropygioeca sp. nov. and Kocuria uropygialis sp. nov. are proposed. The type strains are 36^T (DSM 101740^T = LMG 29265^T) and 257^T (=DSM 101741^T = LMG 29266^T) for K. uropygialis sp. nov. and K. uropygioeca sp. nov., respectively.     

Les premiers Anguilliformes : I. Révision des genres cénomaniens Anguillavus HAY, 1903 et Luenchelys nov. gen.

New specimens from Cenomanian outcrops of Lebanon permit redescribtion of the first eel-like fossil fishes. Anguillavus bathshebaeHay, 1903 becomes synonymous with the type species A. quadripinnisHay, 1903. A new fossil eel with pelvic fins, Anguillavus mazeni nov. sp., is furthermore proposed. In the same way, the revision of Luenchelys minimus nov. gen., nov. sp., reveals some morphological variations at the specific level and a widespread biogeographical repartition which potentially can be important. This whole anatomical revision is a necessary basis for integrating these fossils into the Anguilliformes (Teleostei, Elopomorpha) and gives an idea of the plesiomorphic structural pattern of the order, in which the modern forms are particularly specialised.     

Staphylococcus petrasii sp. nov. including S. petrasii subsp. petrasii subsp. nov. and S. petrasii subsp. croceilyticus subsp. nov., isolated from human clinical specimens and human ear infections

Thirteen coagulase-negative, oxidase-negative, and novobiocin-susceptible staphylococci were isolated from human clinical specimens. The isolates were differentiated from known staphylococcal species on the basis of 16S rRNA, hsp60, rpoB, dnaJ, tuf, and gap gene sequencing, automated ribotyping, (GTG)₅-PCR fingerprinting, and MALDI-TOF MS analysis. Phylogenetic analysis based on the 16S rRNA gene sequence indicated phylogenetic relatedness of the analyzed strains to Staphylococcus haemolyticus, Staphylococcus hominis, Staphylococcus devriesei, and Staphylococcus lugdunensis. DNA–DNA hybridization experiments between representative strains CCM 8418^T, CCM 8421^T, and the closest phylogenetic neighbors confirmed that the isolates represent novel Staphylococcus species, for which the name Staphylococcus petrasii sp. nov. is proposed. Genotypic and phenotypic analyses unambiguously split the strains into two closely related subclusters. Based on the results, two novel subspecies S. petrasii subsp. petrasii subsp. nov. and S. petrasii subsp. croceilyticus subsp. nov. are proposed, with type strains CCM 8418^T (=CCUG 62727^T) and CCM 8421^T (=CCUG 62728^T), respectively.     

Proposal of Xanthomonas translucens pv. pistaciae pv. nov., pathogenic to pistachio (Pistacia vera)

Strains of Xanthomonas translucens have caused dieback in the Australian pistachio industry for the last 15 years. Such pathogenicity to a dicotyledonous woody host contrasts with that of other pathovars of X. translucens, which are characterized by their pathogenicity to monocotyledonous plant families. Further investigations, using DNA-DNA hybridization, gyrB gene sequencing and integron screening, were conducted to confirm the taxonomic status of the X. translucens pathogenic to pistachio. DNA-DNA hybridization provided a clear classification, at the species level, of the pistachio pathogen as a X. translucens. In the gyrB-based phylogeny, strains of the pistachio pathogen clustered among the X. translucens pathovars as two distinct lineages. Integron screening revealed that the cassette arrays of strains of the pistachio pathogen were different from those of other Xanthomonas species, and again distinguished two groups. Together with previously reported pathogenicity data, these results confirm that the pistachio pathogen is a new pathovar of X. translucens and allow hypotheses about its origin. The proposed name is Xanthomonas translucens pv. pistaciae pv. nov.     

Proposal of Ensifer psoraleae sp. nov., Ensifer sesbaniae sp. nov., Ensifer morelense comb. nov. and Ensifer americanum comb. nov

In a survey of rhizobia associated with the native legumes in Yunnan Province, China, seven and nine strains isolated from the root nodules of Psoralea corylifolia, Sesbania cannabina and Medicago lupulina were respectively classified into the novel genomic species groups I and II in the genus Ensifer (former Sinorhizobium) based on the sequence analyses of the 16S rRNA gene. Analyses of concatenated housekeeping genes (atpD, recA and glnII) further revealed that they were distinct lineages in the genus, and group I was most similar to Ensifer terangae and Ensifer garamanticus (both with 94.2% similarity), while group II was most similar to Ensifer adhaerens (94.0%). These groups could be distinguished from closely related species by DNA–DNA relatedness, MALID-TOF MS, cellular fatty acid profiles and a series of phenotypic characters. Therefore, two novel species were proposed: Ensifer psoraleae sp. nov. (seven strains, type strain CCBAU 65732^T = LMG 26835^T = HAMBI 3286^T) and Ensifer sesbaniae sp. nov. (nine strains, type strain CCBAU 65729^T = LMG 26833^T = HAMBI 3287^T). They had a DNA G + C mol% (T_m) of 58.9 and 60.4, respectively. Both of the type strains formed effective nodules on common bean (Phaseolus vulgaris) and their hosts of origin. In addition, the previously described species Sinorhizobium morelense and Sinorhizobium americanum were renamed as Ensifer morelense comb. nov. and Ensifer americanum comb. nov. according to the accumulated data from different studies.     

Eurocharax Tourainei nov. gen., nov. sp. (poisson teleosteen, Ostariophysi): Nouveau Characidae fossile des «Calcaires a Bythinies du Var

The study of fossil Fishes preserved in the «calcaires à Bythinies of Montmeyan, la Mourotte and Saint-Julien-le-Montagné basins (Var. France), makes possible the demonstration of their referal to the family Characidae: These Fishes, here mentioned as Eurocharax tourainei nov. gen., nov. sp., clearly differ from the Lower Eocene Characid fishes of Languedoc and Paris Basin by their set of teeth. The brackish condition of the “calcaires à Bythinies is taken into account for explaining the probable biogeographical history of these Fishes.     

Diaceratherium massiliae nov. sp. des argiles oligocènes de Saint-André et Saint-Henri à Marseille et de Les Milles près d’Aix-en-Provence (SE de la France), premier grand Rhinocerotidae brachypode européen

A revision of all previously collected mammalian fossils from the two Late Oligocene sites of Saint-André and Saint-Henri in Marseille (both from the MP 26 reference-level) allows us to identify three Rhinocerotoidea species: Protaceratherium albigense, Ronzotherium romani, Diaceratherium massiliae nov. sp., and maybe a fourth one, Eggysodon cf. gaudryi. Only the first two were previously known there. D. massiliae nov. sp. is found together with R. romani; it is the first case of sympatry ever known between the two genera. D. massiliae nov. sp. is then the most ancient Diaceratherium in Europe, where the genus was previously unknown before the MP 29 reference-level. It is a very large species whose limb bones proportions foreshadow these of the later species of the genus, especially D. lemanense from the Late Oligocene-Early Miocene. This suggests a possible phylogenetic link between D. massiliae nov. sp. and D. lemanense, and the coexistence of at least two different but partially contemporaneous lineages among the European Diaceratherium. In Les Milles near Aix-en-Provence, also from the MP 26 reference-level, the three species P. albigense, R. romani and D. massiliae nov. sp. were also found.     

Two new species of Constrictoceras nov. gen. (Ammonoidea) from the Early Cretaceous (Aptian) of Hungary

The new genus Constrictoceras is described below, and is represented in Hungary by two new species: Constrictoceras foezyi sp. nov. and Constrictoceras steineri sp. nov. According to morphological similarities, they are provisionally assigned to Acanthohoplitinae, but the lack of sutures cannot keep us from the idea of a possible relationship with Puzosiinae or Silesitidae, therefore its phylogenetic position of Constrictoceras gen. nov. is uncertain. Morphologically similar forms are described from the Aptian of Madagascar (Collignon, M., 1962) and from the Middle Aptian of Colombia (Sharikadze et al., 2004). Stratigraphical and paleobiogeographical use is very limited for the new genus.     

Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples

The phenotypic and genotypic characteristics of fourteen human clinical Achromobacter strains representing four genogroups which were delineated by sequence analysis of nusA, eno, rpoB, gltB, lepA, nuoL and nrdA loci, demonstrated that they represent four novel Achromobacter species. The present study also characterized and provided two additional reference strains for Achromobacter ruhlandii and Achromobacter marplatensis, species for which, thus far, only single strains are publicly available, and further validated the use of 2.1% concatenated nusA, eno, rpoB, gltB, lepA, nuoL and nrdA sequence divergence as a threshold value for species delineation in this genus. Finally, although most Achromobacter species can be distinguished by biochemical characteristics, the present study also highlighted considerable phenotypic intraspecies variability and demonstrated that the type strains may be phenotypically poor representatives of the species. We propose to classify the fourteen human clinical strains as Achromobacter mucicolens sp. nov. (with strain LMG 26685^T [=CCUG 61961^T] as the type strain), Achromobacter animicus sp. nov. (with strain LMG 26690^T [=CCUG 61966^T] as the type strain), Achromobacter spiritinus sp. nov. (with strain LMG 26692^T [=CCUG 61968^T] as the type strain), and Achromobacter pulmonis sp. nov. (with strain LMG 26696^T [=CCUG 61972^T] as the type strain).     

Hexasaturnalis nakasekoi nov. sp., a Jurassic saturnalid radiolarian species frequently confounded with Hexasaturnalis suboblongus (Yao)

Detailed morphological study of the ring of the Jurassic saturnalid radiolarian species frequently cited in the literature as Hexasaturnalis suboblongus (Yao) has proven that it contains two well-defined species: H. suboblongus (Yao), practically ranging within the boundaries of the Bajocian, and Hexasaturnalis nakasekoi nov. sp., ranging within the Bathonian-Kimmeridgian interval. The two species seem to be important stratigraphically because the transition from the former to the latter took place at or around the Bajocian/Bathonian boundary. The phyletic lineage Hexasaturnalis hexagonus (Yao) → H. inuyamaensis (Yao) → H. suboblongus (Yao) → H. nakasekoi nov. sp. → H. minor (Baumgartner) → Dicerosaturnalis angustus (Baumgartner) → D. dicranacanthos (Squinabol) is proposed.     

A mid-Cretaceous ambrosia fungus, Paleoambrosia entomophila gen. nov. et sp. nov. (Ascomycota: Ophiostomatales) in Burmese (Myanmar) amber,and evidence for a femoral mycangium

An ambrosia fungus is described from filamentous sporodochia adjacent to a wood–boring ambrosia beetle (Coleoptera: Curculionidae: Platypodinae) in mid-Cretaceous Burmese amber. Yeast-like propagules and hyphal fragments of Paleoambrosia entomophila gen. nov. et sp. nov. occur in glandular sac mycangia located inside the femur of the beetle. This is the first record of a fossil ambrosia fungus, showing that symbiotic associations between wood–boring insects and ectosymbiotic fungi date back some 100 million years ago. The present finding moves the origin of fungus-growing by insects from the Oligocene to the mid-Cretaceous and suggests a Gondwanan origin.     

Estinnophyton wahnbachense (Kräusel et Weyland) comb. nov., une plante remarquable du siegenien d'allemagne

Specimens collected from the type locality of Protolepidodendron wahnbachense Kräusel et Weyland 1932 (Germany) are studied. The narrow axes, with persistent leaves which are bifurcated and spirally arranged, resemble those of P. wahnbachense. However, the vegetative and fertile leaves bifurcate twice and the four resulting segments are spread in various planes; the fertile leaves support two pairs of stalked elongate sporangia which are directed towards the axis. Estinnophyton wahnbachense (Kräusel et Weyland) comb. nov. is thus proposed as a name for these Siegenian plant remains, the questionable affinities of which are discussed.     

Four new species of Chryseobacterium from the rhizosphere of coastal sand dune plants, Chryseobacterium elymi sp. nov., Chryseobacterium hagamense sp. nov., Chryseobacterium lathyri sp. nov. and Chryseobacterium rhizosphaerae sp. nov.

The taxonomic positions of five Gram-negative, non-spore-forming and non-motile bacterial strains isolated from the rhizosphere of sand dune plants were examined using a polyphasic approach. The analysis of the 16S rRNA gene sequence indicated that all of the isolates fell into four distinct phylogenetic clusters belonging to the genus Chryseobacterium of the family Flavobacteriaceae. The 16S rRNA gene sequence similarities of isolates to mostly related type strains of Chryseobacterium ranged from 97.5% to 98.5%. All strains contained MK-6 as the predominant menaquinone, and iso-C_15:0, iso-C_17:0 3-OH and a summed feature of iso-C_15:0 2-OH and/or C_16:1 ω7c as the dominant fatty acids. Combined phenotypic, genotypic and chemotaxonomic data supported that they represented four novel species in the genus Chryseobacterium, for which the names Chryseobacterium hagamense sp. nov. (type strain RHA2-9^T=KCTC 22545^T=NBRC 105253^T), Chryseobacterium elymi sp. nov. (type strain RHA3-1^T=KCTC 22547^T=NBRC 105251^T), Chryseobacterium lathyri sp. nov. (type strain RBA2-6^T=KCTC 22544^T=NBRC 105250^T), and Chryseobacterium rhizosphaerae sp. nov. (type strain RSB3-1^T=KCTC 22548^T=NBRC 105248^T) are proposed.     

Acetobacter oryzifermentans sp. nov., isolated from Korean traditional vinegar and reclassification of the type strains of Acetobacter pasteurianus subsp. ascendens (Henneberg 1898) and Acetobacter pasteurianus subsp. paradoxus (Frateur 1950) as Acetobacter ascendens sp. nov., comb. nov.

Twelve Acetobacter pasteurianus-related strains with publicly available genomes in GenBank shared high 16S rRNA gene sequence similarity (>99.59%), but average nucleotide identity (ANI) and in silico DNA-DNA hybridization (DDH) values and multilocus sequence- and genome-based relatedness analyses suggested that they were divided into four different phylogenetic lineages. Relatedness analyses based on multilocus sequences, 1,194 core genes and whole-cell MALDI-TOF profiles supported that strains LMG 1590^T and LMG 1591 (previously classified as the type strains of A. pasteurianus subsp. ascendens and paradoxus, respectively) and strain SLV-7^T do not belong to A. pasteurianus. Strain SLV-7^T, isolated from Korean traditional vinegar, shared low ANI (<91.0%) and in silico DDH (44.2%) values with all other Acetobacter type strains analyzed in this study, indicating that strain SLV-7^T represents a new Acetobacter species. The phenotypic and chemotaxonomic analyses confirmed these results and therefore a new species named Acetobacter oryzifermentans sp. nov. is proposed with SLV-7^T (= KACC 19301^T = JCM 31096^T) as the type strain. Strains LMG 1590^T and LMG 1591 shared high ANI (99.4%) and in silico DDH (96.0%) values between them, but shared low ANI (<92.3%) and in silico DDH (<49.0%) values with other type strains analyzed in this study, indicating that strains LMG 1590^T and LMG 1591 should be reclassified into a new single species that should be named Acetobacter ascendens sp. nov., comb. nov., with LMD 51.1^T (= LMG 1590^T = NCCB 51001^T) as its type strain.