水稻基因组物理图的构建

水稻基因组物理图的构建中国科学院国家基因研究中心（上海，２００２３３）关键词水稻基因组物理图我国是水稻栽植国家，约有一半人口以水稻为主食。地球上大约也有一半的人口以水稻为主食。根据我国国情和科学发展的现状和趋势，国家科委于１９９２年８月正式宣布在我国...     

基因枪法转基因水稻中hpt基因稳定遗传

基因枪转化将潮霉素磷酸转移酶基因（ｈｐｔ）导入粳稻品种７７１７０,获得可育的转基因植株,研究外源基因遗传的稳定性。自交后代（Ｔ１和Ｔ２）经潮霉素筛选获得抗性植株和敏感植株,分子鉴定结果表明抗性植株带有ｈｐｔ基因,而敏感植株中没有ｈｐｔ基因存在。Ｔ１和Ｔ２代中潮霉素抗性表现为显性单基因位点的遗传方式,符合孟德尔分离规律,并得到分子鉴定结果的证实。Ｓｏｕｔｈｅｒｎ杂交结果显示,ｈｐｔ基因多拷贝整合在水     

Bt水稻中crylAb基因的遗传分析

用PCR、GUS染色和Western点杂交技术检测了Bt水稻杂交后代群体,在394株GUS阳性株中,有392株表达Bt蛋白,协同表达株率达99.49%。由此表明,在杂交后代中报告基因gus和目的基因crylAb紧密连锁遗传与表达。GUS组织染色和Southern杂交检测表明Bt水稻中的crylAb基因呈单位点显性基因遗传,且在有性世代中能稳定传递,还发现,在BC1、BC1F2和粳粳交F2群体中crylAb基因呈单位点显性基因遗传,而在籼粳交F2群体中偏离3：1分离。     

利用转hpRNA基因水稻抗水稻矮缩病毒

具有发夹结构的双链RNA(hairpin RNA,hpRNA)能高效诱导转录后基因沉默的发生.以水稻(Oryza sativaL.)矮缩病毒(RDV)基因组中第八片段编码区128～754 bp的序列为臂构建hpRNA,并克隆到植物表达载体pROK-2上.通过农杆菌介导的方法转化水稻"中花11".Southern blot分析表明,共获得12株阳性转化体.用带有RDV的叶蝉(Nephotettix cincticeps)接种Tl代转hpRNA水稻,结果表明转基因水稻对RDV具有高抗性或表现为症状延迟.而相同序列的有义链的转基因水稻和空载体的转基因水稻表现为典型的RDV侵染症状.HpRNA在转基因水稻中对RDV高抗性发挥重要作用.     

绿色荧光蛋白基因作为报告基因在水稻基因转化中的应用研究

本研究中 ,构建了含有编码绿色荧光蛋白的改进型基因质粒pJPM5。用基因枪法分别把pJPM5和另一带有绿色荧光蛋白基因的质粒pSBG70 0转入水稻TNG6 7愈伤组织。用South ern杂交法证实了转基因的存在 ,而且表明多数转基因植株含有 1到 8个拷贝的转基因。取 2个月的转基因植株上的叶片用于分析绿色荧光蛋白基因表达。用SLM - 80 0 0荧光分析仪定量测定绿色荧光蛋白。多数转基因植株具有很高的绿色荧光蛋白信号。虽然水稻植株有少量自发荧光 ,但是绿色荧光蛋白基因表达出的绿色荧光蛋白信号比植株的自发荧光强得多 ,其测定不会受自发荧光的太大影响。在荧光显微镜下观察到了绿色荧光蛋白基因的表达。借助观察分析绿色荧光蛋白基因的瞬时表达 ,本研究还发现基因枪法转化中 ,如果两枪的气压为90 0psi& 135 0psi,比两枪的气压都为 90 0psi或者 135 0psi更好 ,因其能使质粒进入更多的细胞。研究结果表明 ,绿色荧光蛋白基因可以作为水稻 (甚至小麦、玉米 )转基因研究中的报告基因。研究还显示 ,MAR序列能明显增强绿色荧光蛋白基因的表达能力 (这一结果在另文讨论 ) .     

苦参凝集素蛋白基因转化水稻的研究

以水稻杂交品种‘云资粳41号’为受体材料,通过农杆菌介导法将苦参凝集素蛋白基因(SFL)导入水稻细胞,采用氯酚红法和PCR检测外源基因是否整合到水稻基因组中。结果显示:外源基因成功转入水稻基因组,并获得一批转基因水稻植株;转基因植株叶片离体接种稻瘟病菌的检测结果显示,转基因植株与对照(非转基因植株)相比有明显的抗性,证明SFL基因在水稻中得到表达。研究表明,基于SFL基因所具备的广谱抗菌作用,可以预期所得转基因水稻植株很可能对水稻的多种病原菌具有良好的抗性,为选育新的抗稻瘟病水稻新品种以及拓宽栽培稻抗病遗传基础增加抗稻瘟病基因奠定了基础。     

水稻香味基因及其在育种中的应用研究进展

水稻(Oryza sativa)为世界上30多亿人口的主食,是最重要的粮食作物之一。作为栽培水稻类型之一的香稻,由于其稻米具有独特的香味,在国内外市场上深受广大消费者的青睐。近年来,随着水稻功能基因组和测序技术的快速发展,针对水稻香味基因的研究取得了较大进展,并开发了一系列的功能标记应用于香味基因筛选和品种培育。该文综述了水稻香味基因的遗传基础、基因功能及其调控、功能标记的开发及应用的新进展,以期为香稻新品种培育提供借鉴与参考。     

水稻线粒体coxⅡ基因转录本的编辑位点研究

RNA编辑是指由RNA水平的核苷酸改变所引起的密码子发生变化的一种预定修饰,它的发现是近年来对分子生物学中心法则的重要补充,本文以红莲型（HL）水稻细胞质雄性不育系粤泰A,保持系粤泰B和杂种F1（不育系A与恢复系71068的杂交一代）为材料,首次研究了线粒体基因coxⅡ转录本的编辑位点,coxⅡ基因的转录本有15个编辑位点,其中有14个发生在密码子的第一和第二位点,这14个位点的编辑可改变氨基酸的种类,并导致所编码蛋白的疏水性以及所编码蛋白在氨基酸序列上的保守性增加。     

染色体作图

1　基本原理人类对各种生物基因组的研究,无论是研究其结构,还是探讨其功能,都需要确定DNA序列在染色体上的位置,因此,遗传标记在染色体上的定位,即染色体作图是基因组学研究开展的基础。20世纪早期。Morgan以果蝇为研究材料发现了基因连锁规律,自此基因作图的工作才真正开始。基因连锁分析的原理为在某一群体中,位于同一条染色体上的两个位点在减数分裂过程中随同源染色体配对而发生重组。重组率(r)则与两个位点在染色体上的遗传距离(M)具有函数关系(见公式1、2)。1Haldre公式:M=-1n(1-2r)2　　r=1-e-2M22Kosambi公式:M=1n(1 2r1-2r)·…     

水稻组蛋白H_3基因的分离和组织结构分析

用噬菌斑原位杂交法,从一个水稻新品系的EMBL,基因文库中筛选到了两个组蛋白H,基因克隆,并制作了它们的限制性内切酶图谱,分析了它们的组织结构。其中λRH_3-1克隆包含2个组蛋白H_3基因区(分别为0.5kb和0.8kb的BamHI-EcoRI片段,两基因区距离5.8kb)。而λRH_3-2克隆只带有1个结构特异的H_3基因区(5.2kb的EcoRI-HindⅢ片段)。本文还就水稻组蛋白H_3基因在整个基因组中的组织结构特点进行了讨论。     

The human gene map

Mapping started exactly 50 years ago when Bell & Haldane (Proc. R. Soc. Lond. 123, 119 (1937] measured the genetic distance between colour blindness and haemophilia. In their Discussion they wrote 'if...an equally close linkage were found between the genes determining blood group membership and that determining Huntington's chorea, we should be able, in many cases, to predict which children of an affected person would develop this disease, and to advise on the desirability or otherwise of their marriage'. Progress in this direction has proceeded through the discovery of autosomal linkages by family studies, and the assignment of genes to particular chromosomes by somatic-cell hybridization techniques. Recombinant DNA technology has been successfully used in both approaches, with the result that many chromosomes are now roughly mapped. In practice, the map can already be used for prenatal diagnosis of several diseases, and may provide 'take-off' points for some molecular approaches to poorly defined genes. More fundamentally, it is beginning to provide insights into the nature of the meiotic process and the organization of the genome.     

The bovine gene map

Summary. The present status of the bovine gene map as well as some of the methods and strategies important for future efforts in completing the gene map of cattle are reviewed.     

The bovine gene map

The present status of the bovine gene map as well as some of the methods and strategies important for future efforts in completing the gene map of cattle are reviewed.     

A universal core genetic map for rice

To facilitate the creation of easily comparable, low-resolution genetic maps with evenly distributed markers in rice (Oryza sativa L.), we conceived of and developed a Universal Core Genetic Map (UCGM). With this aim, we derived a set of 165 anchors, representing clusters of three microsatellite or simple sequence repeat (SSR) markers arranged into non-recombining groups. Each anchor consists of at least three, closely linked SSRs, located within a distance below the genetic resolution provided by common, segregating populations (<500 individuals). We chose anchors that were evenly distributed across the rice chromosomes, with spacing between 2 and 3.5 Mbp (except in the telomeric regions, where spacing was 1.5 Mbp). Anchor selection was performed using in silico tools and data: the O. sativa cv. Nipponbare rice genome sequence, the CHARM tool, information from the Gramene database and the OrygenesDB database. Sixteen AA-genome accessions of the Oryza genus were used to evaluate polymorphisms for the selected markers, including accessions from O. sativa, O. glaberrima, O. barthii, O. rufipogon, O. glumaepatula and O. meridionalis. High levels of polymorphism were found for the tested O. sativa × O. glaberrima or O. sativa × wild rice combinations. We developed Paddy Map, a simple database that is helpful in selecting optimal sets of polymorphic SSRs for any cross that involves the previously mentioned species. Validation of the UCGM was done by using it to develop three interspecific genetic maps and by comparing genetic SSR locations with their physical positions on the rice pseudomolecules. In this study, we demonstrate that the UCGM is a useful tool for the rice genetics and breeding community, especially in strategies based on interspecific hybridisation.     

Anchoring of rice BAC clones to the rice genetic map in silico

A wealth of molecular resources have been developed for rice genomics, including dense genetic maps, expressed sequence tags (ESTs), yeast artificial chromosome maps, bacterial artificial chromosome (BAC) libraries and BAC end sequence databases. Integration of genetic and physical maps involves labor-intensive empirical experiments. To accelerate the integration of the bacterial clone resources with the genetic map for the International Rice Genome Sequencing Project, we cleaned and filtered the available EST and BAC end sequences for repetitive sequences and then searched all available rice genetic markers with our filtered databases. We identified 418 genetic markers that aligned with at least one BAC end sequence with >95% sequence identity, providing a set of large insert clones with an average separation of 1 Mb that can serve as nucleation points for the sequencing phase of the International Rice Genome Sequencing Project.     

Somatic chromosome map of rice by imaging methods

Summary Rice somatic chromosomes were completely identified and quantitatively mapped based on an image parameter, condensation pattern (CP), or a chromosomal density profile determined by imaging methods. The CP corresponds to the compactness of the chromatin fibers along the chromatid, which is characteristic in small plant chromosomes such as rice chromosomes at the mitotic pro-metaphase stage. The standard CP for every chromosome was obtained by averaging 60 CPs from 30 chromosome spreads. Each standard CP exhibited a characteristic pattern of the chromosome, which enabled it to be distinguished from the other chromosomes. An ideogram based on the numerical data and the standard CP was established. The chromosomal address was also determined based on the degree of condensation, and the fractional length of each chromosomal address was quantitatively presented.     

The gene for fragrance in rice

The flavour or fragrance of basmati and jasmine rice is associated with the presence of 2-acetyl-1-pyrroline. A recessive gene (fgr) on chromosome 8 of rice has been linked to this important trait. Here, we show that a gene with homology to the gene that encodes betaine aldehyde dehydrogenase (BAD) has significant polymorphisms in the coding region of fragrant genotypes relative to non-fragrant genotypes. The accumulation of 2-acetyl-1-pyrroline in fragrant rice genotypes may be explained by the presence of mutations resulting in a loss of function of the fgr gene product. The allele in fragrant genotypes has a mutation introducing a stop codon upstream of key amino acid sequences conserved in other BADs. The fgr gene corresponds to the gene encoding BAD2 in rice, while BAD1 is encoded by a gene on chromosome 4. BAD has been linked to stress tolerance in plants. However, the apparent loss of function of BAD2 does not seem to limit the growth of fragrant rice genotypes. Fragrance in domesticated rice has apparently originated from a common ancestor and may have evolved in a genetically isolated population, or may be the outcome of a separate domestication event. This is an example of effective human selection for a recessive trait during domestication.