Phylogeographic patterning in a freshwater crab species (Decapoda: Potamonautidae: Potamonautes) reveals the signature of historical climatic oscillations

Aim The phylogeographic relationships among populations of the common Cape River crab, Potamonautes perlatus, are examined to investigate whether the contemporary population genetic structure is congruent with the hypothesized hydrographic evolution of drainage systems established during the Pliocene, or whether it reflects an older Miocene climatic amelioration. Location 139 samples of P. perlatus were collected from 31 populations distributed among the five major perennial drainage systems and a number of smaller catchments in the Western and Eastern Cape, South Africa. Methods Phylogeographic analysis using parsimony, maximum likelihood, minimum evolution and Bayesian inferences was employed for the 16S rRNA mtDNA gene region, while bootstrapping and posterior probabilities were used to assess the robustness of clades. In addition, nested clade analysis was performed in an attempt to disentangle the contemporary and historical factors that have sculpted genealogical relationships among conspecific populations of P. perlatus. Results Phylogenetic topologies were congruent irrespective of the evolutionary method employed. Two highly distinct reciprocally monophyletic clades characterized by marked levels of corrected sequence divergence were present, with no shared haplotypes between the two major phylogroups. Phylogroup one comprises the populations of the westward‐flowing drainages (mainly the Berg and Olifants drainages), and phylogroup two comprises all of the southward‐flowing drainages and can further be divided into two subclades – one containing the Breede River populations, and the other containing the Gamtoos and Gourits drainage systems. The nested clade analysis demonstrated restricted gene flow and long‐distance dispersal for a number of higher clade levels. The higher‐level groups and results for the total cladogram suggest either fragmentation or isolation by distance. Main conclusions Freshwater crabs are generally highly philopatric, and dispersal, although not common, has occurred historically. The westward‐flowing drainages (Berg, Olifants, Eerste, Liesbeeck and Tokai) are isolated from the southward‐flowing drainages by the Cape Fold Mountains, while the southward‐flowing drainages have a number of tributaries that extend into the low‐lying regions, allowing for gene flow between these three major drainages systems (Breede, Gamtoos and Gourits). Among the westward‐flowing drainages, a more intensive sampling regime is required to understand evolutionary relationships. Our molecular results suggest that the observed patterns pre‐date the formation of contemporary hydrographic patterns in the Cape. This suggests that an older Late Miocene event has severely impacted the contemporary population structure in this species, as recent Pliocene hydrographic boundaries do not correspond to the phylogeographic pattern observed. Conservation efforts for aquatic taxa should clearly be directed at the catchments, in an attempt to conserve biological diversity.     

Renewed sampling of inland aquatic habitats in southern Africa yields two novel freshwater crab species (Decapoda: Potamonautidae: Potamonautes)

A recent survey of the freshwater streams of the Mecula and Yao mountains in the Niassa province of Mozambique resulted in the discovery of a new freshwater crab species. This species is genetically and morphologically distinct from described species from Mozambique or its neighbouring countries, and is described as P otamonautes bellarussus sp. nov. In addition, a new semi‐terrestrial burrowing freshwater crab P otamonautes flavusjo sp. nov. from the Highveld of the Mpumalanga province in South Africa is described based on unique genetic and morphological characters. The phylogenetic affinities of the two new species in relation to the described eastern and southern African Potamonautes species is determined and the biogeographic implications are discussed. © 2014 The Linnean Society of London     

Molecular and morphometric data demonstrate the presence of cryptic lineages among freshwater crabs (Decapoda: Potamonautidae: Potamonautes) from the Drakensberg Mountains, South Africa

The evolutionary importance of cryptic taxa is well documented, yet few studies have examined them with a view to conservation. In the present study, the significance of cryptic speciation in freshwater crabs is examined. Allozyme and 16S rRNA sequence data were used to explore the degree of population differentiation between mountain stream populations of two distinct freshwater crab species. Marked patterns of differentiation were evident among populations; those in close geographical proximity were characterized by the fixation of alternate alleles at certain loci, indicating that currently there is no gene flow among populations. Both allozyme and sequence data provide evidence for the recognition of at least five distinct evolutionary lineages with pronounced levels of genetic differentiation. Morphometric data failed to detect any distinct geographically intermediate population groupings. Our findings indicate the presence of five phylogeographical units, all worthy of conservation, three of which are evolutionarily significant.  © 2003 The Linnean Society of London, Biological Journal of the Linnean Society , 2003, 78 , 129–147.     

Phylogenetic relationships of the southern African freshwater crab fauna (Decapoda: Potamonautidae: Potamonautes) derived from multiple data sets reveal biogeographic patterning

The phylogenetic relationships among the southern African freshwater crab species were examined using partial sequence data from three mitochondrial genes (12S rRNA, 16S rRNA, and mtDNA COI) 26 morphological characters and 14 allozyme loci. The aims of the present study were firstly to determine whether freshwater crab species that live in the same geographic region share a close phylogenetic relationship. Secondly, to investigate whether hybridizing species are genetically closely related and thirdly, to test for the validity of subgenera based on the genetic data sets. Phylogenetic analysis based on sequence data revealed largely congruent tree topologies and some associations had consistently high bootstrap support, and these data did not support Bott's subgeneric divisions. The morphological data were less informative for phylogenetic reconstruction while the allozyme data generally supported patterns recovered by the sequence data. A combined analysis of all the data recovered two monophyletic clades, one comprised of small-bodied mountain stream species and the other clade consisting of large-bodied riverine species. The combined analyses reflected clear biogeographic patterning for these river crabs. In addition, there was a clear correlation between genetic distance values and the ability of sympatric species to hybridize.     

Neglected refugia of biodiversity: mountainous regions in Mozambique and Malawi yield two novel freshwater crab species (Potamonautidae: Potamonautes)

Phylogenetic relationships amongst the southern African freshwater crab fauna are reinvestigated following the recent collection of morphologically distinct Potamonautes specimens from remote mountainous regions in Malawi and Mozambique. Specimens were subjected to DNA sequencing of three mtDNA loci, cytochrome c oxidase subunit I (COI), 12S rRNA, and 16S rRNA and compared to the 14 described species from the region. Phylogenetic analysis using maximum parsimony and Bayesian inference revealed the presence of two novel evolutionary lineages. The phylogeny demonstrates that Potamonautes obesus (A. Milne‐Edwards, 1868) is sister to a morphologically distinct novel species from Mount Namuli in Mozambique. Two sympatric and genetically distinct species from Mount Mulanje, in Malawi (forms A and B) were recognized. Form B is sister to the large‐bodied South African riverine freshwater crabs and represents a novel lineage whereas the remaining species (form A) from Mulanje, in Malawi was sister to samples from Mounts Inago and Mabu, and in Mozambique was identified as Potamonautes choloensis (Chace, 1953). The two novel evolutionary lineages were genetically distinct and morphologically different from the described species in each of the respective regions. Two new freshwater crab species Potamonautes namuliensis sp. nov. and Potamonautes mulanjeensis sp. nov. , are described in the present study. The samples from Mount Mulanje in Malawi, and Mounts Mabu and Inago in Mozambique represent new distribution records for Potamonautes choloensis. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 164 , 498–509.     

Geographic patterns of genetic and morphological divergence amongst populations of a river crab (Decapoda, Potamonautidae) with the description of a new species from mountain streams in the Western Cape, South Africa

Recent systematic research has revealed that Potamonautes brincki comprises two genetically and morphologically distinct population groups. The systematic affinities between these population groups have remained uncertain. In the present study, the relationship between the population groups was examined. Eleven populations were collected from high mountain streams in the Western Cape, South Africa and used in the genetic and morphological analyses. Allozyme electrophoresis of 13 protein coding loci separated two main population groups: group A (Cape Peninsular groups) and group B (Hottentot's Holland) at I  = 0.73. Two additional genetic groups were evident, with group B being conspecific to group A, and group D being conspecific to group C. Morphological examination of pleopod 1 and the terminal segment of the mandibular palp showed considerable differences between the two main population groups, with groups A and B being similar and groups C and D being similar. The morphometric data for the four main groups were examined using discriminant functions analysis and the two main groups were compared using analyses of covariance. Discriminant functions analysis showed a moderate degree of overlap between the groups. Additional morphometric data showed a clear discrimination between the two main population groups. The genetic and morphometric data sets exhibited congruent patterns of variation and the data showed the presence of a species boundary. A new freshwater crab species, P. parvicorpus sp. n., is described. The results of the present study are discussed in the light of historical and contemporary factors that are likely to have contributed to speciation.     

Morphological and genetic differentiation between populations of river crabs (Decapoda: Potamonautidae) from the Western Gape, South Africa, with a taxonomic re-examination of Gecarcinautes brincki

As part of a larger study on the systematics of river crabs of the family Potamonautidae in southern Africa, several populations of potamonautid crabs were collected from the Cape Peninsula and surrounds, Western Cape. Two species were represented: Gecarcinautes brincki and Potamonautes perlatus. The structure of the mandibular palp in the eight populations of G. brincki examined was variable, and in four populations, the structure of this palp was the same as that which can be found in species of Potamonautes. This paper re-examines the taxonomic status of G. brincki , quantifies the morphological and genetic differentiation between populations of G. brincki and P. perlatus from the Cape Peninsula, and determines the extent of morphological and genetic differentiation among geographically separated populations of G. brincki. Examination of type and other material confirmed that Gecarcinautes brincki conforms to the current diagnosis of the genus Potamonautes (family Potamonautidae) to which it is therefore transferred. Discriminant functions analysis and protein gel electrophoresis showed that P. perlatus and P. brincki are morphometrically and genetically distinct, with the three P. perlatus populations separating from the six P. brincki populations at a genetic identity value of I = 0.66 (D = 0.419). The results also showed that P. brincki is a highly structured entity, with die populations collected from the Cape Peninsula clearly separating both genetically (I = 0.75, corresponding to D = 0.296), and morphologically (presence or absence of a flange on the terminal segment of the mandibular palp) from those collected further east. The lack of gene flow between populations of this species is discussed in the light of current species concepts.     

A checklist of ants (Hymenoptera: Formicidae) in northern Shaanxi Province,China, with one new species of genus Proformica Ruzsky, 1902

A preliminary checklist of the ants of northern Shaanxi is presented based on an evaluation from June 2018 to September 2020. Seven species are reported from Shaanxi for the first time: Formica approximans Wheeler, 1933; Formica clara Forel, 1886; Messor aralocaspius (Ruzsky, 1902); Plagiolepis pygmaea (Latreille, 1798); Tapinoma rectinotum Wheeler, 1927; Tetramorium chefketi Forel, 1911; Tetramorium tsushimae Emery, 1925 and Temnothorax ruginosus Zhou, Huang, Yu & Liu, 2010. A new species of genus Proformica Ruzsky, 1902, Proformica muusensis sp. nov., is described based on the morphology and molecular method. In total, three subfamilies with 34 valid ant species in 15 genera are reported in our checklist.     

Egg production of the burrowing shrimp Callichirus seilacheri (Bott 1955) (Decapoda, Callianassidae) in northern Chile

The thalassinidean shrimp Callichirus seilacheri is a common species in the intertidal zone of the South American Pacific coast. However, our knowledge of its reproductive ecology is rather limited. The present study was carried out between January and December 2003 at Las Machas, northern Chile. Although ovigerous females were encountered almost throughout the study period, they were particularly abundant between May and September when water temperatures were lowest and sediment coverage of the burrow entrances was highest. Females of C. seilacheri produced numerous (17,450 ± 3,796 eggs) and small (0.884 ± 0.080 mm; 0.262 ± 0.054 mm³) eggs when compared to other thalassinidean shrimps for which such information is available. Fecundity was positively correlated with female size; however, correlations were allometric, which might be related to the elasticity of the abdomen. Egg volume increased by 41.2% during embryogenesis, and egg loss during the incubation period was on average 8%. Females inverted on average 14.9% of their dry weight into egg production.     

Disentangling the divergence and cladogenesis in the freshwater crab species (Potamonautidae: Potamonautes perlatus sensu lato) in the Cape Fold Mountains,South Africa,with the description of two novel cryptic lineages

River networks of major drainages can form barriers that shape the phylogeography of freshwater organisms, particularly those with low dispersal capabilities. Freshwater crab species' distributions can be used to examine hydrological patterns to expose historical drainage interconnectivity. We used molecular sequence data (mitochondrial and nuclear DNA) and divergence time estimations to determine the phylogeography of the freshwater crab, Potamonautes perlatus sensu lato, from six drainage systems along the Cape Fold Mountains, South Africa. Two major clades were detected: clade 1 comprised two geographically discrete haploclades occurring in southern flowing drainages, whereas clade 2 included specimens from western flowing drainages. Divergence time estimations suggested a Pleistocene (c. 2.61 Mya) divergence of P. perlatus s.l. The Pleistocene was associated with arid conditions and drainage contractions. However, it is likely that during the mesic conditions of the Pleistocene, P. perlatus s.l. migrated and diverged into contemporary patterns. We conclude that three lineages are nested within P. perlatus s.l., two representing novel species. Potamonautes perlatus sensu stricto is confined to western flowing drainages. The two novel species both occurring in southern flowing drainages are described here: P otamonautes barbarai sp. nov. occurs in the Gamtoos and Gourits Rivers and P otamonautes barnardi sp. nov. in the Breede River. © 2014 The Linnean Society of London     

Etyid crabs (Crustacea,Decapoda) from mid‐Cretaceous Reefal strata of Navarra,northern Spain

Abstract: All known etyid crabs (Crustacea, Decapoda) from the upper Albian – lower Cenomanian Aldoirar coralgal‐dominated patch reef (Albeniz Unit, Eguino Formation), as exposed at the disused Koskobilo quarry in Navarra, northern Spain, are described, discussed and illustrated. A new species, Xanthosia koskobiloensis, the first member of the genus on record from southern Europe, is erected, and a variety that appears closely related to this, Xanthosia cf. X. koskobiloensis, is recognised. This new taxon could be a forerunner of the early Palaeocene (Danian) Xanthosia gracilis from Fakse (Sjælland, eastern Denmark), with which it shares a morphologically closely similar carapace. On the basis of a revised overview here of all species assigned to it, the genus Xanthosia may have evolved in an environment dominated by deposition of siliciclastics, rather than chalks. In addition, Etyxanthosia fossa has been collected at Koskobilo, and as the distribution of all known specimens demonstrates, E. fossa inhabited various environments. Another new species, Caloxanthus paraornatus, is closely similar as well to a species from Fakse, Caloxanthus ornatus, and constitutes the first record of the genus for southern Europe.     

Genetic differentiation among populations of Caridinazebra (Decapoda: Atyidae) in tropical rainforest streams, northern Australia

1. Caridina zebra is a common atyid shrimp in some tropical rainforest streams in far north Queensland, Australia. Genetic variation at five allozyme loci was used to estimate the level of dispersal among populations of this species, within and between stream systems. Shrimps were sampled from nine streams in the Tully River catchment and two headwater streams in the adjacent Herbert River catchment in an area under consideration for extensive hydroelectric development.
2. High levels of genetic differentiation were recorded among most populations which suggests that, like other fully aquatic species, movement is limited to a very small spatial scale.
3. In the Tully catchment, populations of shrimp from streams with confluences at high altitude showed less genetic differentiation than those from streams which directly entered the lower river. Dispersal between the latter streams is clearly limited by the presence of large waterfalls and cascades.
4. Adjacent stream populations were often highly differentiated, despite their close proximity, suggesting that overland dispersal is unlikely. However, populations of shrimp in the two streams in the Herbert catchment were strikingly similar in genetic structure to those in adjacent headwater streams of the Tully. Such similarity may reflect relatively recent changes in drainage patterns.     

A new Philocheras species (Decapoda,Crangonidae) from Hansa Bay,Papua New Guinea

A new species of crangonid shrimp, Philocheras wilkinsae (Decapoda, Crangonidae) is described from Hansa Bay, Madang Province, Papua New Guinea. The new species belongs to the japonicus group, and can be distinguished from the other members of this group by carapace dentition and carination. The pleopod structure is unique in the genus.     

Phylogeny, biogeography and a new taxonomy for the Gecarcinucoidea Rathbun, 1904 (Decapoda: Brachyura)

Phylogenetic relationships of gecarcinucoid freshwater crabs were investigated, based on morphology of the male second gonopod. In addition, a comparison of sequences from the mitochondrial large subunit rRNA gene helped to resolve the phylogeny of this group and relationships to other Old World freshwater crabs. As a result, we recognise two sister groups within the Gecarcinucoidea, the African Deckeniidae and the Asian Gecarcinucidae. Deckeniidae includes three monophyletic clades, the Deckeniinae in East Africa and on the Seychelles, the West African Globonautinae and the Malagasy Hydrothelphusinae. Gecarcinucidae comprises two sister groups, the Gecarcinucinae with representatives in Sri Lanka, India and southeast Asia, and the Parathelphusinae in India, southeast Asia, the Sundaic Islands and Australia. Interpretation of our phylogenetic results leads us to propose a new biogeographic hypothesis for the Gecarcinucoidea. Most likely, the gecarcinucoid freshwater crabs have an African origin; their distribution can be explained by successive events of dispersal. This model can be correlated with palaeogeographical and palaeoclimatological data for the Cenozoic, suggesting a gecarcinucoid dispersal to Asia via the “Lemurian Stepping-Stones”, a chain of islands in the West-Indian Ocean that were emergent in times of low sea levels during the Oligocene.     

Schistosoma curassoni Brumpt, 1931 and S. bovis (Sonsino, 1876) in cattle in northern Nigeria

Schistosoma curassoni has been recovered from cattle in northern Nigeria. Rectal scrapings of 90 cows slaughtered at the Kano abattoir, Kano, Nigeria during March and April 1986 revealed a prevalence of 7.8% S. bovis and 2.2% S. curassoni. Further examination of the mesenteric and rectal veins of 502 cows showed that the overall prevalence of schistosomiasis was 31.1%. Local Bulinus globosus were infected successfully in the laboratory with s. bovis miracidia.