Profiling of plasma and faeces by FT-IR to differentiate between heathland plant diets offered to zero-grazed sheep

To investigate the relationships between plant composition in a complex diet mixture and intake by sheep, blood and faeces were analysed by Fourier transform mid-infrared (FT-IR) spectroscopy. Each of four mature Welsh Mountain ewes was maintained, for a period of 9 days, on one of three diets comprising a mixture of heathland plants containing either 100 g/kg (H100), 200 g/kg (H200) or 300 g/kg (H300) heather (Calluna vulgaris) in the fresh matter. Spectra of blood and faeces from each animal were acquired and the data analysed using principal component analysis (PCA) and hierarchical cluster analysis (HCA). We also investigated multinomial regression as an extension beyond the pattern recognition state. Animals offered the H300 diet could be consistently separated from animals fed on the H100 and H200 diets by PCA and HCA of plasma data, and these results were consistent with animals on the H300 diet consuming greater quantities of heather. Using faecal spectra, PCA and HCA discriminated between animals on the H200 diet and those on the H100 and H300 diets. Analysis of the plasma and faecal data by the multinomial model indicated that when PCs 4, 5 and 6 of the plasma data and PCs 3 and 4 of the faecal data were selected as covariates, leave-one-out cross-validation (LOO-CV) achieved an accurate dietary classification for 9 out of the 11 animals. In the present study, we have shown the ability to discriminate animals offered closely related diets on the basis of metabolic fingerprints of plasma and faeces.     

Temporal fluctuations and experimental effects in desert plant communities

In the Chihuahuan Desert of the southwestern United States we monitored responses of both winter and summer annual plant communities to natural environmental variation and to experimental removal of seed-eating rodents and ants for 13 years. Analyses of data on population densities of the species by principal component analysis (PCA) followed by repeated measures analysis of variance (rmANOVA) on PCA scores showed that: (1) composition of both winter and summer annual communities varied substantially from year to year, presumably in response to interannual climatic variation, and (2) community composition of winter annuals was also significantly affected by the experimental manipulations of seed-eating animals, but the composition of the summer annual community showed no significant response to these experimental treatments. Canonical discriminant analysis (CDA) was then applied to the data for winter annuals to more clearly identify the responses to the different classes of experimental manipulations. This analysis showed that removing rodents or ants or both taxa caused distinctive changes in species composition. There was a tendency for large-seeded species to increase on rodent removal plots and to decrease on ant removal plots, and for small-seeded species to change in the opposite direction. In the winter annual community there was a significant time x treatment interaction: certain combinations of species that responded differently to removal of granivores also showed opposite fluctuations in response to long-term climatic variation. The large year-to-year variation in the summer annual community was closely and positively correlated across all experimental treatments. The use of multivariate analysis in conjunction with long-term monitoring and experimental manipulation shows how biotic interactions interact with variation in abiotic conditions to affect community dynamics.     

Spatial patterns in brown bear Ursus arctos diet: the role of geographical and environmental factors

• 1 We reviewed worldwide spatial patterns in the food habits of the brown bear Ursus arctos in relation to geographical (latitude, longitude, altitude) and environmental (temperature, snow cover depth and duration, precipitation, primary productivity) variables.
• 2 We collected data from 28 studies on brown bear diet based on faecal analysis, covering the entire geographical range of this widely distributed large carnivore. We analysed separately four data sets based on different methods of diet assessment.
• 3 Temperature and snow conditions were the most important factors determining the composition of brown bear diet. Populations in locations with deeper snow cover, lower temperatures and lower productivity consumed significantly more vertebrates, fewer invertebrates and less mast. Trophic diversity was positively correlated with temperature, precipitation and productivity but negatively correlated with the duration of snow cover and snow depth. Brown bear populations from temperate forest biomes had the most diverse diet. In general, environmental factors were more explicative of diet than geographical variables.
• 4 Dietary spatial patterns were best revealed by the relative biomass and energy content methods of diet analysis, whereas the frequency of occurrence and relative biomass methods were most appropriate for investigating variation in trophic diversity.
• 5 Spatial variation in brown bear diet is the result of environmental conditions, especially climatic factors, which affect the nutritional and energetic requirements of brown bears as well as the local availability of food. The trade‐off between food availability on the one hand, and nutritional and energetic requirements on the other hand, determines brown bear foraging decisions. In hibernating species such as the brown bear, winter severity seems to play a role in determining foraging strategies. Large‐scale reviews of food habits should be based on several measures of diet composition, with special attention to those methods reflecting the energetic value of food.

     

Factors Influencing Interannual and Intersite Variability in the Diet of <Emphasis Type="Italic">Trachypithecus francoisi</Emphasis>

Comparative studies of the diet of the same species in different habitats, and over the long term, are essential to understanding a species’ behavioral and ecological plasticity. Moreover, such studies can help researchers and managers evaluate a species’ capacity to cope with changes in habitat quality resulting from natural processes or human disturbance, which is important for developing conservation strategies. We compared dietary data for François’ langur (Trachypithecus francoisi) collected at Nonggang and Fusui Nature Reserves, Guangxi Province, China, over 2 separate study periods to evaluate interannual and intersite variation in diet. Young leaves were the preferred staple foods for langurs, whereas mature leaves and seeds served as fallback foods in response to seasonal shortage in the abundance of young leaves. Species composition of the diets and the percentage of feeding records for plant species varied between the 2 study periods. The langurs at both study sites fed selectively, and they did not base their diet simply on the abundance of plant species in the habitat. However, the plant species eaten by langur groups inhabiting the 2 different reserves were markedly different, and the top 10 food species eaten by the Fusui group showed no overlap with those eaten by the Nonggang group. The variation may be related to differences in forest composition resulting from different level of human disturbance. In summary, our results indicate that François’ langurs exhibit a comparable dietary pattern both temporally and geographically, but there is marked interannual and intersite difference in species composition of the langur diet.     

Effect of bite force and diet composition on craniofacial diversification of Southern South American human populations

Ecological factors can be important to shape the patterns of morphological variation among human populations. Particularly, diet plays a fundamental role in craniofacial variation due to both the effect of the nutritional status—mostly dependent on the type and amount of nutrients consumed—on skeletal growth and the localized effects of masticatory forces. We examine these two dimensions of diet and evaluate their influence on morphological diversification of human populations from southern South America during the late Holocene. Cranial morphology was measured as 3D coordinates defining the face, base and vault. Size, form, and shape variables were obtained for 474 adult individuals coming from 12 samples. Diet composition was inferred from carious lesions and δ¹³C data, whereas bite forces were estimated using traits of main jaw muscles. The spatial structure of the morphological and ecological variables was measured using correlograms. The influence of diet composition and bite force on morphometric variation was estimated by a spatial regression model. Cranial variation and diet composition display a geographical structure, while no geographical pattern was observed in bite forces. Cranial variation in size and form is significantly associated with diet composition, suggesting a strong effect of systemic factors on cranial growth. Conversely, bite forces do not contribute significantly to the pattern of morphological variation among the samples analyzed. Overall, these results show that an association between diet composition and hardness cannot be assumed, and highlight the complex relationship between morphological diversification and diet in human populations. Am J Phys Anthropol 155:114–127, 2014. © 2014 Wiley Periodicals, Inc.     

Trophic diversity of the otter (Lutra lutra L.) in temperate and Mediterranean freshwater habitats

Aim To analyse the geographical patterns in the composition and diversity of otter's (Lutra lutra L.) diet and their relationship with climatic characteristics. Location European freshwater habitats under Mediterranean and temperate climatic regimes. Methods Thirty‐seven otter diet studies were reviewed, twenty‐one from temperate and sixteen from Mediterranean areas. All studies were based on spraint analysis and their results expressed as relative frequency of occurrence of seven main prey categories. Principal Component Analysis was performed to extract the main gradients of diet composition. Pearson's correlation and t‐tests were used to assess the relationship between diet characteristics (composition, diversity and taxonomic richness) and geographical and climatic variables. Results A clear latitudinal gradient in diet composition was observed. Otter diet was more diverse and featured more prey classes in southern localities, while the species was more piscivorous towards the north, where it predated upon a higher number of fish families. This pattern was similar when temperate and Mediterranean localities of Europe were compared. Mediterranean otters behaved as more generalist predators than temperate ones, relying less on fish, and more on aquatic invertebrates and reptiles. Main conclusions Geographical differences in otter feeding ecology in Europe seem to be related with the two contrasted climatic conditions affecting prey populations. The otter can act as a highly specialized piscivorous predator in temperate freshwater ecosystems, which do not suffer a dry season and have a comparatively stable water regime compared to Mediterranean ones. However, the unpredictable prey availability in Mediterranean areas, affected by strong spatial and temporal water shortages, favours a diversification of the otter's diet.     

嘉陵江不同江段蛇鮈的食性分析

2015年和2016年的10—11月,在嘉陵江上游(广元)、中游(蓬安)、下游(合川)采集210尾蛇鮈Saurogobio dabryi,采用传统镜检法对其食性进行研究。结果表明:嘉陵江蛇鮈属于杂食性鱼类,饵料生物包括5大类(79小类);聚类分析表明,出现率(F%)、数量百分比(N%)和相对重要性指数(IRI%)在衡量食物对嘉陵江蛇鮈的重要性方面表现一致,但基于质量百分比(W%)的食物重要性结果与前三者之间的差异有统计学意义。4种指数显示,上游和中游江段蛇鮈均以动物性饵料为主,为偏肉食性的杂食性鱼类,下游江段蛇鮈以藻类为主,为偏植食性的杂食性鱼类。选用W%对其食性进行不同江段之间比较,聚类分析表明中游与上游和下游存在显著差异(d> 0. 3); Schoener重叠指数比较显示,不同江段蛇鮈摄食的饵料生物存在空间差异(C_xy<0. 60)。研究认为蛇鮈的食性具有较强的地域性和可塑性,可能是对不同江段水生生态环境适应的结果。     

黄海中部高眼鲽的摄食及随体长的变化

对2004年1月-2005年10月在黄海中部采集的622尾高眼鲽样品的胃含物进行分析.结果表明：高眼鲽摄食的食物种类包括11类38种,其中甲壳类和瓣鳃类为优势饵料类群,共占食物相对重要性指数百分比的99%;食物中的优势饵料种类为太平洋磷虾、脊腹褐虾和樱蛤.与20世纪80年代相比,黄海高眼鲽的摄食强度下降,食物组成发生了较大的变化;鱼类不再是优势饵料类群,鳀鱼在食物中所占的比例明显下降.通过聚类分析和列联表检验等方法对高眼鲽摄食随体长的变化进行研究,结果表明：体长在51～370 mm范围内的高眼鲽的摄食强度没有显著的体长变化,但不同体长组摄食的食物种类有一定差异.＜119 mm的主要以磷虾类和底层虾类为食;体长在120～199 mm的除以磷虾类和底层虾类为主要食物外,还摄食相当比例的瓣鳃类和鱼类;＞200 mm的则主要摄食底层虾类和鱼类,磷虾类所占比例减小.     

Systems genetic analysis of multivariate response to iron deficiency in mice

The aim of this study was to identify genes that influence iron regulation under varying dietary iron availability. Male and female mice from 20+ BXD recombinant inbred strains were fed iron-poor or iron-adequate diets from weaning until 4 mo of age. At death, the spleen, liver, and blood were harvested for the measurement of hemoglobin, hematocrit, total iron binding capacity, transferrin saturation, and liver, spleen and plasma iron concentration. For each measure and diet, we found large, strain-related variability. A principal-components analysis (PCA) was performed on the strain means for the seven parameters under each dietary condition for each sex, followed by quantitative trait loci (QTL) analysis on the factors. Compared with the iron-adequate diet, iron deficiency altered the factor structure of the principal components. QTL analysis, combined with PosMed (a candidate gene searching system) published gene expression data and literature citations, identified seven candidate genes, Ptprd, Mdm1, Picalm, lip1, Tcerg1, Skp2, and Frzb based on PCA factor, diet, and sex. Expression of each of these is cis-regulated, significantly correlated with the corresponding PCA factor, and previously reported to regulate iron, directly or indirectly. We propose that polymorphisms in multiple genes underlie individual differences in iron regulation, especially in response to dietary iron challenge. This research shows that iron management is a highly complex trait, influenced by multiple genes. Systems genetics analysis of iron homeostasis holds promise for developing new methods for prevention and treatment of iron deficiency anemia and related diseases.     

Evaluation of metabolic changes induced by polyphenols in the crayfish <Emphasis Type="Italic">Astacus leptodactylus</Emphasis> by metabolomics using Fourier transformed infrared spectroscopy

In the present study, the effects of polyphenols on the chemical composition of the hepatopancreas of the Astacus leptodactylus, a highly sought farmed crayfish, have been investigated by attenuated total reflectance–Fourier transform infrared (ATR-FTIR) spectroscopy. The hepatopancreas spectrum was quite complex and contained several peaks arising from the contribution of different functional groups belonging to protein, lipids and carbohydrates. The PCA statistical analysis revealed that there were significant differences between crayfish fed a diet without polyphenols and crayfish fed a diet containing polyphenols. Such differences indicated an increase in lipids and proteins in the hepatopancreas of polyphenol-fed crayfish. In conclusion, the analysis of the infrared spectral profile of the hepatopancreas of Astacus leptodactylus, allowed us to elucidate the changes in different biomolecules in response to polyphenol treatment, and confirms the suitability of ATR-FTIR spectral data to analyze diet-induced metabolic effects. These considerations, coupled with the small amount of sample and no preparation needed, make ATR-FTIR a useful tool for routine analyses where the metabolic impact of substances is investigated, especially with a large number of samples.     

Metabonomic and metallomic profiling in the amniotic fluid of malnourished pregnant rats

Epidemiology and studies in animal models have revealed that prenatal malnutrition is highly correlated with abnormal fetal neurodevelopment. We present here a combined metabonomic and metallomic profiling technique to associate the metabolic and trace-elemental composition variations of rat amniotic fluid (AF) in malnourished pregnant rats with the retardation of fetal rat neurodevelopment. The AF samples from three groups of pregnant Sprague-Dawley rats, which were fed either a normal diet, a low-protein diet, or "a famine diet", were subjected to GC/MS and ICP/MS combined with multivariate data analysis (MVDA). PCA scores plot of both GC/MS and ICP/MS data showed similar and unique metabolic signatures of AF in response to the different diets. Rats in the famine group released increased amounts of glycine, inositol, putrescine, and rubidium and decreased amounts of methionine, dopa, tryptophan, glutamine, zinc, cobalt, and selenium in the AF. These discriminable variations in the AF may indicate the abnormality of a number of metabolic pathways in fetal rats including the folate cycle and methionine pathway, the monoamine pathway, and tri-iodothyronine (T3) metabolism. The abnormalities may be the result of metabolites or elemental differences or a combination of both. This study demonstrates the potential of combining profiling of small-molecule metabolites and trace elements to broaden the understanding of biological variations associated with fetal neurodevelopment induced by environmental perturbation.     

Diet of chimpanzees (Pan troglodytes schweinfurthii) at Ngogo, Kibale National Park, Uganda, 1. Diet composition and diversity

Chimpanzees (Pan troglodytes) are ecologically flexible omnivores with broad diets comprising many plant and animal foods, although they mostly eat fruit (including figs). Like other ecologically flexible nonhuman primates (e.g., baboons, Papio spp.) with broad diets, their diets vary across habitats. Much data on diets come from short studies that may not capture the range of variation, however, and data are scant on variation within habitats and populations. We present data on diet composition and diversity for chimpanzees at Ngogo, in Kibale National Park, Uganda, collected over a 15-year period, with a focus on the plant components of the diet. We compare Ngogo data to those on chimpanzees at the nearby Kibale site of Kanyawara, on other chimpanzee populations, and on some other frugivorous-omnivorous primates. Results support the argument that chimpanzees are ripe fruit specialists: Ngogo chimpanzees ate a broad, mostly fruit-based diet, feeding time devoted to fruit varied positively with fruit availability, and diet diversity varied inversely with fruit availability. Comparison of Ngogo and Kanyawara shows much similarity, but also pronounced within-population dietary variation. Chimpanzees fed much more on leaves, and much less on pith and stems, at Ngogo. Figs accounted for somewhat less feeding time at Ngogo, but those of Ficus mucuso were quantitatively the most important food. This species is essentially absent at Kanayawara; its abundance and high productivity at Ngogo, along with much higher abundance of several other important food species, help explain why chimpanzee community size and population density are over three times higher at Ngogo. High inter-annual variation at Ngogo highlights the value of long-term data for documenting the extent of ecological variation among chimpanzee populations and understanding how such variation might affect population biology and social dynamics.     

Essential Oils from Piper caldense C. DC. and Piper xylosteoides (Kunth) Steud.: Seasonal Variation of the Chemical Composition and Antimicrobial Activity

The essential oils (EOs) chemical composition can be affected by several environmental factors, impacting their desired biological activities. In this sense, this work aimed to evaluate the seasonal variation of the chemical composition and antimicrobial activity of Piper caldense and Piper xylosteoides leaves EOs. Their chemical composition was determined by GC/MS and GC-FID analyses, resulting in the identification of eighty compounds. P. caldense EOs were mainly consisted of sesquiterpene hydrocarbons, whereas in P. xylosteoides EOs, monoterpene hydrocarbons were predominant. EOs from both species strongly inhibited B. subtilis (MIC=0.25 mg mL⁻¹), while only P. caldense EOs showed strong activity against S. aureus (MIC=0.50 mg mL⁻¹). P. caldense spring EO showed the broadest spectrum of antimicrobial action amongst all samples. For each species, PCA seasonally differentiated EOs chemical composition. In addition, as expected, PCA of all samples showed a distinction between the two species. This study has successfully demonstrated the importance of evaluating the seasonal variation of EOs chemical composition and antimicrobial activity in obtaining a product with the desired properties.     

Changes in haematological parameters in relation to prey switching in a wild population of harbour seals

1. Previous studies have found marked inter-annual variation in winter food availability, diet composition and body condition in a population of harbour seals ( Phoca vitulina L.) in Northeast Scotland. This study aimed to determine whether there were other physiological consequences of prey switching by comparing haematological parameters in years when the clupeids herring and sprat dominated the diet and in years when seals switched to alternative prey.
2. There were significant differences in leukocyte and erythrocyte parameters in relation to diet composition. In contrast, indices of body condition did not explain the variation in haematological parameters, suggesting that the observed changes did not result from differences in the energetic content of the prey.
3. Leukocyte counts were significantly higher after 'good' clupeid years, although the differences in mean counts were small. Such differences could have resulted either from immuno-suppression, for example because of differences in prey nutrient or contaminant levels, or from differences in the pathogen challenge resulting from geographical variations in water quality.
4. The differences in erythrocyte parameters were more marked, and there was evidence of widespread macrocytic anaemia when seals switched from clupeids to alternative prey. Such differences could result either from acclimation, as a result of prey-specific foraging strategies, or from differences in the nutritional quality of prey.
5. These results indicate that generalist predators such as the harbour seal may exhibit physiological responses to changes in the composition of their diet. These data highlight the need to consider the long-term physiological effects of variations in food availability on the population dynamics of generalist marine top predators. In particular, it is hypothesized that fish-induced anaemia may be responsible for declines in certain pinniped populations.     

Taxonomic discrimination of flowering plants by multivariate analysis of Fourier transform infrared spectroscopy data

Fourier transform infrared spectroscopy (FTIR) provides biochemical profiles containing overlapping signals from a majority of the compounds that are present when whole cells are analyzed. Leaf samples of seven higher plant species and varieties were subjected to FTIR to determine whether plants can be discriminated phylogenetically on the basis of biochemical profiles. A hierarchical dendrogram based on principal component analysis (PCA) of FTIR data showed relationships between plants that were in agreement with known plant taxonomy. Genetic programming (GP) analysis determined the top three to five biomarkers from FTIR data that discriminated plants at each hierarchical level of the dendrogram. Most biomarkers determined by GP analysis at each hierarchical level were specific to the carbohydrate fingerprint region (1,200–800 cm^–1) of the FTIR spectrum. Our results indicate that differences in cell-wall composition and structure can provide the basis for chemotaxonomy of flowering plants.Abbreviations FTIR Fourier transform infrared spectroscopy - GP Genetic programming - PCA Principal component analysis - PyMS Pyrolysis mass spectrometry     

Feeding ecology of the endangered Valencia toothcarp,Valencia hispanica (Actinopterygii: Valenciidae)

Patterns of food resource utilisation by Valencia toothcarp were studied in a small coastal lagoon in the Iberian Peninsula, its most northern population. Emphasis was placed on feeding activity, diet composition, seasonal and intraspecific variation in diet and feeding strategy. Important features of the overall feeding pattern of the Valencia toothcarp are decreased feeding activity during winter, concentration on benthic invertebrates and narrow dietary breadth, with a focus on gammarid amphipods. The feeding of V. hispanica was independent of seasonal variation in food availability, because its main prey were much the same throughout the year. There were no differences in seasonal niche width and niche overlap between seasons was high. There are also no differences in diets between sexes, although diet composition, niche width and niche overlap differ between juvenile and adult fish. The Valencia toothcarp population from Santes Creus lagoon was formed by specialist individuals, with narrow niche widths, that fed on four preferential prey types, but also consumed some occasional prey.     

Pyrolysis-molecular beam mass spectrometry to characterize soil organic matter composition in chemically isolated fractions from differing land uses

Today’s questions concerning the role of soil organic matter (SOM) in soil fertility, ecosystem functioning and global change can only be addressed through knowledge of the controls on SOM stabilization and their interactions. Pyrolysis molecular beam mass spectrometry (py-MBMS) provides a powerful and rapid means of assessing the biochemical composition of SOM. However, characterization of SOM composition alone is insufficient to predict its dynamic behavior. Chemical fractionation is frequently used to isolate more homogeneous SOM components, but the composition of fractions is frequently unknown. We characterized biochemical SOM composition in two previously studied soils from the USA, under contrasting land uses: cultivated agriculture and native vegetation. Bulk soils, as well as chemically isolated SOM fractions (humic acid, humin and non-acid hydrolysable), were analyzed using py-MBMS. Principal components analysis (PCA) showed distinct differences in the SOM composition of isolated fractions. Py-MBMS spectra and PCA loadings were dominated by low molecular weight fragments associated with peptides and other N-containing compounds. The py-MBMS spectra were similar for native whole-soil samples under different vegetation, while cultivation increased heterogeneity. An approach based on previously published data on marker signals also suggests the importance of peptides in distinguishing samples. While the approach described here represents significant progress in the characterization of changing SOM composition, a truly quantitative analysis will only be achieved using multiple internal standards and by correcting for inorganic interference during py-MBMS analysis. Overall, we have provided proof of principle that py-MBMS can be a powerful tool to understand the controls on SOM dynamics, and further method development is underway.     

Accuracy, Reproducibility, and Interpretation of Fatty Acid Methyl Ester Profiles of Model Bacterial Communities

We determined the accuracy and reproducibility of whole-community fatty acid methyl ester (FAME) analysis with two model bacterial communities differing in composition by using the Microbial ID, Inc. (MIDI), system. The biomass, taxonomic structure, and expected MIDI-FAME profiles under a variety of environmental conditions were known for these model communities a priori. Not all members of each community could be detected in the composite profile because of lack of fatty acid “signatures” in some isolates or because of variations (approximately fivefold) in fatty acid yield across taxa. MIDI-FAME profiles of replicate subsamples of a given community were similar in terms of fatty acid yield per unit of community dry weight and relative proportions of specific fatty acids. Principal-components analysis (PCA) of MIDI-FAME profiles resulted in a clear separation of the two different communities and a clustering of replicates of each community from two separate experiments on the first PCA axis. The first PCA axis accounted for 57.1% of the variance in the data and was correlated with fatty acids that varied significantly between communities and reflected the underlying community taxonomic structure. On the basis of our data, community fatty acid profiles can be used to assess the relative similarities and differences of microbial communities that differ in taxonomic composition. However, detailed interpretation of community fatty acid profiles in terms of biomass or community taxonomic composition must be viewed with caution until our knowledge of the quantitative and qualitative distribution of fatty acids over a wide variety of taxa and the effects of growth conditions on fatty acid profiles is more extensive.     

Regularized projection pursuit for data with a small sample-to-variable ratio

As a systematic and holistic study of metabolites in plants, animals, and human beings, metabolomics has advanced considerably in recent years, due largely to the rapid development of analytical technology and the application of multivariate data analysis methods. Exploratory data analysis, which has played a crucial role in this advance, aims to examine the natural data structure to reveal important information. Principal components analysis (PCA) is probably the most widely used technique for exploratory data analysis, but projection pursuit (PP) is another important method that often outperforms PCA because it is based on distributional rather than variance optimization. Recent algorithmic improvements have made the implementation of PP easier, but, when the sample size is small compared to the number of variables, it is found that PP (with kurtosis as a projection index) fails to gives meaningful information. Mathematically, this involves the ill-posed inverse problem that also occurs for many other multivariate data analysis methods that result in overfitting. In this work, a regularized projection pursuit (RPP) method is proposed to solve this problem and iterative optimization algorithms are developed for both step-wise univariate and multivariate PP. The utility of the algorithms is established using simulated data, which also demonstrates the use of ridge trace plots for the optimization of the ridge parameter. Three experimental data sets in the public domain are also analyzed, including a study on soy bean disease (47 samples × 35 variables), NMR spectral data for glomerulonephritis patients (50 × 200) and metabolomics data from a bovine diet study (39 × 47). In all cases, RPP showed superior class separation compared to PCA or ordinary PP.     

Morphological traits influence prey selection by coexisting species of New World warblers (Parulidae)

New World wood warblers (Parulidae) represent one of the most dramatic adaptive radiations in North America. However, the ecological bases for the morphological differences among these species remain poorly understood, especially considering how many foraging and habitat studies the family has inspired. We hypothesized the existence of relationships between parulid morphology and diet. We combined a principal component analysis (PCA) of 18 external morphological traits of 11 species of warblers with stomach-content data from coexisting species in one breeding community in Louisiana and three wintering communities in Jamaica. The primary morphological differences, corresponding with the first three PCA axes, were body size, morphological adaptations for aerial foraging versus gleaning, and arboreal versus ground-foraging adaptations. Our analysis revealed little morphological overlap among the 11 species. Differences in diet among the warblers showed a significant relationship to the first two PCA axes of morphological traits. For five coexisting, foliage-gleaning species wintering in Jamaican wet limestone forest, larger warblers ate larger beetles and Orthopterans but not larger ants. In analyses including all four communities, species of warblers with aerial foraging morphologies consumed a greater proportion of winged insects than other warbler species. These findings document prey selection relevant to multiple subtle morphological differences among coexisting species. Overall, our results indicate that food and foraging have likely played an integral role in the morphological diversification and coexistence of species in the family Parulidae.