Moisture enhances the positive effect of leaf‐cutting ant refuse dumps on soil biota activity

Soil biota activity in arid lands is often limited by the availability of water and organic matter. We experimentally explored whether small changes in soil moisture affect the activity of soil biota in external refuse dumps of the leaf‐cutting ant Acromyrmex lobicornis, one of the most important sources of organic matter in a semi‐arid land of north‐western Patagonia. We estimated CO₂ consumption in refuse dumps and in adjacent, non‐nest soil samples at two moisture levels, after 48 and 72 h. Soil biota activity, estimated by respiration rates, was up to 160 times greater in refuse dumps than in adjacent, non‐nest soils. Activity of soil biota in non‐nest soil did not change through time and was not affected by moisture. Conversely, soil biota increased their activity in refuse dump samples only at high moisture condition after 72 h. As the activity of microorganisms is key for soil nutrient generation and availability, refuse dumps may be considered as ‘islands of fertility’ for plants. This effect may be especially important after sporadic spring rainfalls, when the beneficial effect of refuse dumps on soil biota is enhanced. In addition, as refuse dumps generate several times more CO₂ than non‐nest soils, nest areas may be considered also as hot spots of CO₂ emissions. These results illustrate the potential importance of ant nests for nutrient cycling, maintenance of plant cover and carbon balance in arid ecosystems.     

Phyto-bioconversion of hard coal in the Cynodon dactylon/coal rhizosphere

Fundamental processes involved in the microbial degradation of coal and its derivatives have been well documented. A mutualistic interaction between plant roots and certain microorganisms to aid growth of plants such as Cynodon dactylon (Bermuda grass) on hard coal dumps has recently been suggested. In the present study coal bioconversion activity of nonmycorrhizal fungi was investigated in the C. dactylon/coal rhizosphere. Fungal growth on 2% Duff-agar, gutation formation on nitric acid treated coal and submerged culture activity in nitrogen-rich and -deficient broth formed part of the screening and selection of the fungi. The selected fungal isolates were confirmed to be found in pristine C. dactylon/coal rhizosphere. To simulate bioconversion, a fungal aliquot of this rhizosphere was used as inoculum for a Perfusate fixed bed bioreactor, packed with coal. The results demonstrate an enhanced coal bioconversion facilitated by low molecular weight organics and the bioconversion of coal may be initiated by an introduction of nitrogen moieties to the coal substrate. These findings suggest a phyto-bioconversion of hard coal involving plant and microbes occurring in the rhizosphere to promote the growth of C. dactylon. An understanding of this relationship can serve as a benchmark for coal dumps rehabilitation as well as for the industrial scale bioprocessing of hard coal.     

油页岩废渣场的生态恢复

油页岩开采带来一系列的生态与环境问题 ,但对油页岩废渣场进行生态恢复的历史还较短 ,也缺少系统专门的研究报道。国外对油页岩废渣的利用始于 2 0世纪 4 0年代 ,对废渣场生态恢复的研究始于 2 0世纪 6 0年代 ,均早于我国。由于废渣场的基质成分恶劣 ,缺乏一般的土壤结构 ,复垦难度大。一般有 3种常规的复垦方法 :不经处理直接栽种植物 ;常规的物理或化学处理后栽种植物 ;表土覆盖后再进行植被恢复。前 2种方法均难产生显著效果 ,第 3种见效较快 ,但工作量大。近年来 ,一些新技术 ,如生物降解、生物富集和生物强化技术等被发明并用来恢复油页岩废弃地 ,取得了较好的生态恢复与修复效果。我国从 1985年开始 ,在广东茂名进行油页岩废渣场的生态恢复工作 ,先后对面积达 1.4 km2 和 6 .7km2 的 2个大型废渣场 (南排土场和北排土场 )进行了治理 ,主要是采用生物修复技术中的植物修复来进行试验。南排土场经过 19a的复垦演替成了郁郁葱葱的森林 ;北排经过 5 a的实践也取得了很好的恢复效果 ,一些幼林初步形成。然而 ,当前北排土场恢复实践中出现了一些很值得关注的现象 ,如乔木树种矮化、分枝增多等 ,但这些问题还有待进一步研究解决。此外 ,还探讨了油页岩废渣场开展生态恢复的步骤与原则     

The use of genetic probes to detect microorganisms in biomining operations

Summary Microorganisms are currently used for the recovery of copper from mining dumps of low-grade ore. One of the most important microorganisms involved in copper-solubilization isThiobacillus ferrooxidans, although many other microbial genera are also thought to be implicated. A mining dump poses some special problems for the industrial microbiologist because it represents a non-sterile and heterogeneous substrate. Consequently, to enhance our knowledge of the role of microorganisms in metal recovery we must identify the indigenous microorganisms and understand their respective contributions to the process. In addition, when a superior strain of microorganism is developed in the laboratory, by genetic engineering or by other means, we must have a method to evaluate the maintenance of such a strain in the mining dump. In this paper, we describe DNA homology studies, using dot blot and Southern blot analysis of hybridizations of both whole genomic DNA and cloned DNA sequences, to identify and enumerate several bioleaching microorganisms. We demonstrate that it is possible to identify different species of microorganisms and, in one case, to discriminate between different strains of a single species. It is also possible to identify and quantitate certain species in a mixed culture. DNA hybridization analysis has several advantages over the more conventional bacteriological methods of identification, especially in a complex bioleaching situation.     

Effects of reclamation measures on plant colonization on lignite waste in the eastern Pyrenees,Spain

Abstract. This paper deals with vegetation establishment on waste dumps in the montane and submontane belts of the eastern Pyrenees, where submediterranean Quercus humilis forests, Pinus sylvestris forests and mesoxerophilous pastures make up most of the landscape; these are considered as target communities for reclamation. The waste consists of marl and lime regolith, very poor in nutrients and structure (Poch et al. 1989). The dumps were terraced in 1985–1986; some were left for spontaneous re‐colonization and others were reclaimed in various ways. In 1992 we took 36 vegetation samples on the dumps, based on the point quadrat procedure, to evaluate the colonization status and the differences between reclamation techniques. The samples were analysed on the basis of their species composition (ecological groups and multivariate analysis) and structural aspects (coverage, diversity, etc.). Reclamation treatment results varied widely, most of the dumps showing a low degree of naturalness. Colonizing vegetation ranged from a mixture of opportunist and stress‐resistant taxa, forming poorly covered surfaces on the dumps where colonization has been poor, to dense grasslands dominated by one (or a few) introduced competitive grass species, where reclamation procedures had been intensive. Sowing treatments, where pasture species were sown onto dumps, produced intermediate results, as resulting vegetation cover was similar to control plots and naturalness was low, but in a few cases they yielded more interesting swards, fairly dense and diverse, and including high numbers of spontaneous species. Choice of sown species and proximity to undisturbed vegetation accelerate succession.     

Species composition and ecologo-phytocenotic spectra of vascular plants, mosses, and lichens on gold-mining sites in the taiga zone of the lower Amur River basin, the Russian Far East

Two-hundred-three species of vascular plants, 50 species of bryophyte and 41 species of lichens have been found on dredging and hydraulic gold-mining sites in the taiga zone of the lower Amur River basin. The main features of the anthropogenic relief and vegetation have been described. Dredging and hydraulic dumps are supposed to have the biggest similarity in the species composition and set of ecologo-phytocenotic elements, while the biggest difference is observed between dredging and hydraulic dumps on the one hand and pockets and settling pits, on the other. According to the data obtained in different regions, the species diversity of vascular plants growing on dredging and hydraulic gold-mining sites is quite rich.     

White Storks, <Emphasis Type="Italic">Ciconia ciconia</Emphasis>, forage on rubbish dumps in Poland—a novel behaviour in population

Information on the foraging of White Storks on rubbish dumps, a novel behaviour in Central European populations, is presented. Observations were first made in 1999 and to date; they have been recorded on sixteen locations in Poland. From one to 348 White Storks (median = 2, N = 116) were observed on rubbish dumps, and most of the records (86%) were of 1–3 birds. Birds foraging on rubbish dumps were recorded from late March to early September, but the highest numbers were seen during the summer months. Most of the birds (77%, N = 171) were recorded foraging directly on an area where rubbish had been thrown, while a minor fraction (16%) was seen on neighbouring recultivated grassy areas. Dumps were used as an additional food source probably in areas where natural foraging grounds are limited. The increased frequency of observations during the summer months probably resulted from the greater nutritional needs of large nestlings which force the adults to find alternative food sources or foraging habitat shift by non-breeding birds.     

Molecular methods for environmental monitoring and containment of genetically engineered microorganisms

Plans to introduce genetically engineered microorganisms into the environment has led to concerns over safety and has raised questions about how to detect and to contain such microorganisms. Specific gene sequences, such as lacZ, have been inserted into genetically engineered microorganisms to permit their phenotypic detection. Molecular methods have been developed based upon recovery of DNA from environmental samples and gene probe hybridization to specific diagnostic gene sequences for the specific detection of genetically engineered microorganisms. DNA amplification using the polymerase chain reaction has been applied to enhance detection sensitivity so that single gene targets can be detected. Detection of messenger RNA has permitted the monitoring of gene expression in the environment. The use of reporter genes, such as the lux gene for bioluminescence, likewise has permitted the observation of gene expression. Conditional lethal constructs have been developed as models for containment of genetically engineered microorganisms. Suicide vectors, based upon the hok gene have been developed as model containment systems.     

Leaching of copper ore of the Udokanskoe deposit at low temperatures by an association of acidophilic chemolithotrophic microorganisms

Pure cultures of indigenous microorganisms Acidithiobacillus ferrooxidans strain TFUd, Leptospirillum ferrooxidans strain LUd, and Sulfobacillus thermotolerans strain SUd have been isolated from the oxidation zone of sulfide copper ore of the Udokanskoe deposit. Regimes of bacterial-chemical leaching of ore have been studied over a temperature range from −10 to +20°C. Effects of pH, temperature, and the presence of microorganisms on the extraction of copper have been shown. Bacterial leaching has been detected only at positive values of temperature, and has been much more active at +20 than at +4°C. The process of leaching was more active when the ore contained more hydrophilic and oxidized minerals. The possibility of copper ore leaching of the Udokanskoe deposit using sulfuric acid with pH 0.4 at negative values of temperature and applying acidophilic chemolithotrophic microorganisms at positive values of temperature and low pH values was shown.     

Diversity of native and alien plant species on rubbish dumps: effects of dump age, environmental factors and toxicity

Abstract. The flora of 96 rubbish dumps consisting of organic, inorganic and industrial wastes was studied in the Czech Republic. Some dumps contained toxic substances (heavy metals, chlorethylenes, phenols, polychlorinated biphenyls, oil hydrocarbons and biogas). Statistically significant factors explaining the number and proportional representation of native plant species, archaeophytes (introduced before 1500) and neophytes (introduced later) were determined. In total, 588 species of vascular plants were recorded, with archaeophytes (133 species) over‐represented and native species (322 species) and neophytes (133 species) under‐represented compared to their proportions in the national flora. Minimum adequate models were used to determine the effects of several factors on species numbers and proportions, independent of other factors. Dump area, human density in the region and altitude (non‐significant only in archaeophytes) were correlated positively with species numbers. Dump age, expressed as time since dump establishment, interacted with the dump toxicity; species numbers increased with dump age on non‐toxic dumps, whereas on toxic dumps no increase in numbers was noted. For neophytes, dump toxicity also interacted with human density; the increase in numbers of neophytes with human density is more pronounced on toxic than on non‐toxic dumps. The variables measured failed to explain observed differences in proportional representation of native species, archaeophytes and neophytes. This suggests that the occurrence of species growing in such extreme habitats is driven overwhelmingly by factors such as anthropogenic disturbance. A possible explanation for the positive effect of altitude on species numbers on dumps is that the effect of heating of the deposited substrate by microbiological processes, documented by previous studies, overrides the effect of altitude which was shown repeatedly to have a negative effect on species richness. Neophyte distribution is driven by an interplay of factors distinct from those influencing the distribution of native species, namely toxicity and human density (the latter we interpret as a surrogate for propagule pressure). Their distribution on studied dumps is more restricted than that of native taxa and archaeophytes, and they are more limited by toxic substrata; more intensive propagule pressure is required for their establishment at dumps with higher toxicity levels.     

Cellulose-Enriched Microbial Communities from Leaf-Cutter Ant (Atta colombica) Refuse Dumps Vary in Taxonomic Composition and Degradation Ability

Deconstruction of the cellulose in plant cell walls is critical for carbon flow through ecosystems and for the production of sustainable cellulosic biofuels. Our understanding of cellulose deconstruction is largely limited to the study of microbes in isolation, but in nature, this process is driven by microbes within complex communities. In Neotropical forests, microbes in leaf-cutter ant refuse dumps are important for carbon turnover. These dumps consist of decaying plant material and a diverse bacterial community, as shown here by electron microscopy. To study the portion of the community capable of cellulose degradation, we performed enrichments on cellulose using material from five Atta colombica refuse dumps. The ability of enriched communities to degrade cellulose varied significantly across refuse dumps. 16S rRNA gene amplicon sequencing of enriched samples identified that the community structure correlated with refuse dump and with degradation ability. Overall, samples were dominated by Bacteroidetes, Gammaproteobacteria, and Betaproteobacteria. Half of abundant operational taxonomic units (OTUs) across samples were classified within genera containing known cellulose degraders, including Acidovorax, the most abundant OTU detected across samples, which was positively correlated with cellulolytic ability. A representative Acidovorax strain was isolated, but did not grow on cellulose alone. Phenotypic and compositional analyses of enrichment cultures, such as those presented here, help link community composition with cellulolytic ability and provide insight into the complexity of community-based cellulose degradation.     

Seedling recruitment in a semi‐arid Patagonian steppe: Facilitative effects of refuse dumps of leaf‐cutting ants

Question: What is the influence of refuse dumps of leaf‐cutting ants on seedling recruitment under contrasting moisture conditions in a semi‐arid steppe? Location: Northwestern Patagonia, Argentina. Methods: In a greenhouse experiment, we monitored seedling recruitment in soil samples from refuse dumps of nests of the leaf‐cutting ant Acromyrmex lobicornis and non‐nest sites, under contrasting moisture conditions simulating wet and dry growing seasons. Results: The mean number of seedling species and individuals were higher in wet than in dry plots, and higher in refuse dump plots than in non‐nest soil plots. The positive effect of refuse dumps on seedling recruitment was greater under low moisture conditions. Both the accumulation of discarded seeds by leaf‐cutting ants and the passive trapping of blowing‐seeds seems not explain the increased number of seeds in refuse dumps. Conversely, refuse dumps have higher water retention capacity and nutrient content than adjacent non‐nest soils, allowing the recruitment of a greater number of species and individual seedlings. Conclusions: Nests of A. lobicornis may play an important role in plant recruitment in the study area, allowing a greater number of seedlings and species to be present, hence resulting in a more diverse community. Moreover, leaf‐cutting ant nests may function as nurse elements, generating safe sites that enhance the performance of neighbouring seedlings mainly during the driest, stressful periods.     

Rapid assay for detection of microorganisms producing DNA-damaging metabolites

Microorganisms producing DNA-damaging metabolites (i.e., fungi and streptomycetes) were detected by the Bacillus subtilis rec assay with agar plugs from plates on which the microorganisms had been grown. This assay allowed rapid identification of aflatoxinogenic fungi and streptomycetes producing strong DNA-damaging metabolites. For screening programs, several media have to be used to grow the microorganisms to be tested.     

Rapid assay for detection of microorganisms producing DNA-damaging metabolites.

Microorganisms producing DNA-damaging metabolites (i.e., fungi and streptomycetes) were detected by the Bacillus subtilis rec assay with agar plugs from plates on which the microorganisms had been grown. This assay allowed rapid identification of aflatoxinogenic fungi and streptomycetes producing strong DNA-damaging metabolites. For screening programs, several media have to be used to grow the microorganisms to be tested.     

First record of bacteriomorphic organisms in platanoid infructescences from the Campanian Kundur locality,Amur region

Bacteriomorphic organisms found in fruits of capitate infructescences in Kunduricarpus Kodrul, N. Maslova, Tekleva et Golovneva, Platanaceae, are described. Three types of carpel damage have been detected: (1) evidence of penetration of microorganisms in the walls of the carpel, (2) three-dimensional structures (isolated and in chains) rounded in section, which fill the inner space of the carpel, and (3) imprints of these structures on the inner surface of the carpel wall cuticle. The possible nature of the microorganisms is discussed.     

Upper boundary of the biosphere.

By using meterological rockets fitted with specially designed analyzers, samples for microbiological investigation have been taken. The analyzer design prevented extraneous microorganisms from penetrating into the analyzer. Before being used, the analyzers were sterilized with high gamma-ray doses. For the first time microorganisms have been detected in the mesosphere at an altitude of 48 to 77 km. The microorganisms are microscopic fungi having black conidia or spores (Circinella muscae, Aspergillus niger, Papulaspora anomala) and one species forming green conidia (Penicillium notatum). Colonies of Mycobacterium luteum and Micrococcus albus have also grown. Five of the six species have synthesized pigments. The presence of pigmented microbial forms leads us to believe that natural selection is occurring in the mesosphere because cells possessing chromogenous pigments (carotenoids, melanins) are more resistant to ultraviolet-ray action. A greater number of microorganisms have been registered in the mesosphere during dust storms than in the absence of strong winds.     

Changes inClostridium acetobutylicum during acetone-butanol fermentation detected by measurement of electrophoretic mobility

Summary Changes inClostridium acetobutylicum during acetone-butanol fermentation have been detected by measurement of electrophoretic mobility using a laser doppler particle electrophoresis instrument. These results are shown to correspond to the two stages of the fermentation and to agree with other observations of flocculation and changes in morphology of the microorganisms.     

Artificial boulderfield yields a surprise: The Smoky Mouse in Kosciuszko National Park,Australia

Spoil dumps in the subalpine and montane environments of Kosciuszko National Park in far south‐eastern Australia are modified landscapes which in the past were considered to have little faunal value. Recent finds (2010–2011) of the critically endangered Mountain Pygmy‐possum (Burramys parvus) have resulted in a reconsideration of the importance of such landscapes to fauna. Such re‐evaluation has been translated into on‐ground actions, including the construction of an artificial boulderfield on one spoil dump as habitat targeting Mountain Pygmy‐possum in rehabilitation works. Trapping 7 and 19–20 months, respectively, after these works has so far not recorded this Pygmy‐possum. However, it led to the discovery of another critically endangered species, the Smoky Mouse (Pseudomys fumeus). Two males (with three recaptures) and one female were captured in 250 trapnights in November 2015 and an additional male in 600 trapnights in December 2015. The capture of this enigmatic species is highly significant as it is the first live capture of the species in the park and it is only the second locality in which live captures have been made in New South Wales since 2001. The location of the Smoky Mouse in spoil dumps further emphasises how these areas provide existing and potential habitat for native fauna species.     

Geobotanical studies on zinc deposit areas of Zawar mines,Udaipur

This study reveals disjunct distribution patterns of certain plant species on zinc-rich soils in the Zawar mines region near Udaipur. Ten plant species have high constancy and fidelity values on zinc-rich soils in comparison to normal soil. The plant community composed of these species has been named Impatiens balsamina-Triumfetta pentandra association. As Impatients balsamina is the most characteristic species on metal dumps, it can be considered as a local indicator for the metal zinc.Acknowledgements: The authors are grateful to the University Grants Commission of India, New Delhi for substantial financial assistance.     

Detection of rat Pneumocystis carinii proteinases and elastase and antipneumocystis activity of proteinase inhibitors in vitro

Proteinases play an important role in survival of microorganisms and in pathogenicity of diseases. By using a modified SDS-gelatin-polyacrylamide gel system, proteinases of rat-P.carinii were detected as bands of proteolytic digestion after electrophoresis. P.carinii organisms obtained from dexamethasone immunosuppressed transtracheally infected rats were cultured in spinner flask suspension cultures to minimize host cell contamination. At pH 8.3, seven Pc-specific proteolytic bands were detected in three clusters of different molecular weights clearly different from host cell patterns. By using a range of pH, various preparations of organisms and both infected and uninfected culture media, proteolytic activities have been partially characterized. Elastase secretion has been assessed based on elastin digestion model. Proteinase inhibitors have been tested for their ability to inhibit P.carinii growth in HEL299 short-term monolayer cultures. Results indicate that proteolytic activities are involved in the proliferation of microorganisms since leupeptin exerted in vitro antipneumocystis activity while aprotinin enhanced P.carinii growth.