Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity

Benthic primary producers in marine ecosystems may significantly alter biogeochemical cycling and microbial processes in their surrounding environment. To examine these interactions, we studied dissolved organic matter release by dominant benthic taxa and subsequent microbial remineralization in the lagoonal reefs of Moorea, French Polynesia. Rates of photosynthesis, respiration, and dissolved organic carbon (DOC) release were assessed for several common benthic reef organisms from the backreef habitat. We assessed microbial community response to dissolved exudates of each benthic producer by measuring bacterioplankton growth, respiration, and DOC drawdown in two-day dark dilution culture incubations. Experiments were conducted for six benthic producers: three species of macroalgae (each representing a different algal phylum: Turbinaria ornata – Ochrophyta; Amansia rhodantha – Rhodophyta; Halimeda opuntia – Chlorophyta), a mixed assemblage of turf algae, a species of crustose coralline algae (Hydrolithon reinboldii) and a dominant hermatypic coral (Porites lobata). Our results show that all five types of algae, but not the coral, exuded significant amounts of labile DOC into their surrounding environment. In general, primary producers with the highest rates of photosynthesis released the most DOC and yielded the greatest bacterioplankton growth; turf algae produced nearly twice as much DOC per unit surface area than the other benthic producers (14.0±2.8 µmol h⁻¹ dm⁻²), stimulating rapid bacterioplankton growth (0.044±0.002 log10 cells h⁻¹) and concomitant oxygen drawdown (0.16±0.05 µmol L⁻¹ h⁻¹ dm⁻²). Our results demonstrate that benthic reef algae can release a significant fraction of their photosynthetically-fixed carbon as DOC, these release rates vary by species, and this DOC is available to and consumed by reef associated microbes. These data provide compelling evidence that benthic primary producers differentially influence reef microbial dynamics and biogeochemical parameters (i.e., DOC and oxygen availability, bacterial abundance and metabolism) in coral reef communities.     

Effects of desiccation and rewetting on the release and decomposition of dissolved organic carbon from benthic macroalgae

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Impact of intentionally injected carbon dioxide hydrate on deep-sea benthic foraminiferal survival

Sequestration of carbon dioxide (CO₂) in the ocean is being considered as a feasible mechanism to mitigate the alarming rate in its atmospheric rise. Little is known, however, about how the resulting hypercapnia and ocean acidification may affect marine fauna. In an effort to understand better the protistan reaction to such an environmental perturbation, the survivorship of benthic foraminifera, which is a prevalent group of protists, was studied in response to deep-sea CO₂ release. The survival response of calcareous, agglutinated, and thecate foraminifera was determined in two experiments at ∼3.1 and 3.3 km water depth in Monterey Bay (California, USA). Approximately 5 weeks after initial seafloor CO₂ release, in situ incubations of the live–dead indicator CellTracker Green were executed within seafloor-emplaced pushcores. Experimental treatments included direct exposure to CO₂ hydrate, two levels of lesser exposure adjacent to CO₂ hydrate, and controls, which were far removed from the CO₂ hydrate release. Results indicate that survivorship rates of agglutinated and thecate foraminifera were not significantly impacted by direct exposure but the survivorship of calcareous foraminifera was significantly lower in direct exposure treatments compared with controls. Observations suggest that, if large scale CO₂ sequestration is enacted on the deep-sea floor, survival of two major groups of this prevalent protistan taxon will likely not be severely impacted, while calcareous foraminifera will face considerable challenges to maintain their benthic populations in areas directly exposed to CO₂ hydrate.     

Effect of disinfection upon dissolved organic carbon (DOC) in wastewater: bacterial bioassays

Quantitative and qualitative changes in organic matter content of wastewater effluents attributable to chlorination and ozonation have been analysed using bioassays as well as organic carbon direct measures. Bioassays were carried out using the bacterial populations of wastewater and two Escherichia coli strains as test micro-organisms. Our results indicate that pure strains present some advantages over indigenous bacteria. Although wastewater bacterial populations are better adapted to growth in wastewater, E. coli strains are more sensitive to changes in dissolved organic carbon (DOC) content. Moreover, the use of pure cultures allows estimation of the portion of DOC which can be converted in cell biomass, the assimilable organic carbon (AOC). Finally, the results obtained using prototrophic and the auxotrophic strains of E. coli suggested that ozonation alters the amino acid composition of wastewater while chlorination does not change the quantity nor the quality of the DOC present in effluents.     

Effect of salinity and plant species on CO2 flux and leaching of dissolved organic carbon during decomposition of plant residue

Mitigation of increased concentrations of CO₂ in the atmosphere by plants may be more efficient in saline systems with soils lower in organic matter than in other freshwater systems. In saline systems, decomposition rates may be lower and potential soil carbon storage higher than in fresh water systems. The effects of salinity, plant species and time on CO₂ surface flux and dissolved organic carbon (DOC) leached during irrigation were determined in the laboratory in microcosms containing sand amended with residues of two halophytes, Atriplex nummularia and Salicornia bigelovii, and one glycophyte, Triticum aestivum. Surface flux of CO₂ and DOC leached during decomposition were monitored for 133 days at 24 °C in microcosms containing different plant residue (5% w/w). Microcosms were irrigated every 14 days with distilled water or seawater adjusted to 10, 20, or 40 g L^-1 salts. CO₂ flux and DOC leached were significantly higher from microcosms amended with A. nummularia residue compared to S. bigelovii or T. aestivum at all salinities and decreased significantly over time for all plant species. Irrigating with water of high salinity, 40 g L^-1, compared to distilled water resulted in a decrease in CO₂ surface flux and DOC in leachate, but differences were not significant at all sampling dates. Results indicate that plant residue composition, as well as increased salinity, affect CO₂ surface flux and DOC in leachate during plant residue decomposition and may be an important consideration for C storage in saline systems.     

Stoichiometric analysis of dissolved organic carbon flux into storage and growth in aerobic granules culture

This study attempted to address a fundamental question of whether metabolic behaviors of aerobic granules are different from their counterparts, such as activated sludge and biofilms. A series of respirometric experiments were carried out using mature aerobic granules with mean sizes of 0.75–3.4 mm. Results suggested that metabolism of aerobic granules comprised three consecutive phases: (i) conversion of external dissolved organic carbon to a poly-β-hydroxybutyrate-like substance; (ii) growth of aerobic granules on the stored poly-β-hydroxybutyrate-like substance derived from phase I, and (iii) subsequent endogenous metabolism of aerobic granules. The stoichiometric analysis revealed that the conversion yields of external dissolved organic carbon to the poly-β-hydroxybutyrate-like substance, the growth yields of biomass on storage, and the overall growth yields of biomass on external dissolved organic carbon were not significantly correlated to the sizes of aerobic granules, i.e., the metabolism of aerobic granules would be size independent. The conversion coefficients and growth rates of aerobic granules were found to be comparable with those reported in the activated sludge and biofilms cultures, indicating that there would not be significant difference in the metabolisms of aerobic granules over activated sludge and biofilms. This information will be useful for modeling and designing aerobic granular sludge processes.     

Effect of dissolved carbon dioxide on oxygen consumption in the Pacific white shrimp,Litopenaeus vannamei (Boone 1931)

A failure in the aeration system of Litopenaeus vannamei rearing with biofloc technology can decrease the oxygen concentrations rapidly and also increase the carbon dioxide (CO₂) concentrations at the same rate. We report here an evaluation of the effect of CO₂ on the oxygen consumption of L. vannamei. We used a continuous-flow respirometer with water recirculation equipped with a digital fiber-optic oximeter. Eight juveniles of L. vannamei (12.1 ± 1. 4 g) were used in each treatment with one per respiratory chamber (0.6 L). The shrimp were exposed to six concentrations of CO₂ (5, 30, 60, 95, 150, and 300 mgCO₂/L) with an acute exposure time of six hours. Upon treatment with 5–30 mgCO₂/L, we observed a consumption of oxygen of 0.233 ± 0.129 and 0.33 ± 0.072 mgO₂/g/h, respectively. Upon treatment with 60 mgCO₂/L, an increase was observed in the oxygen consumption (0.521 ± 0.098 mgO₂/g/h). Upon treatment with 95, 150, and 300 mgCO₂/L however, the shrimp decreased their oxygen consumption and lost their equilibrium. The CO₂ should therefore be maintained at a maximum of 5 mgCO₂/L during shrimp rearing.     

Adsorption and bioadsorption of granular activated carbon (GAC) for dissolved organic carbon (DOC) removal in wastewater

In this study, the performances of GAC adsorption and GAC bioadsorption in terms of dissolved organic carbon (DOC) removal were investigated with synthetic biologically treated sewage effluent (BTSE), synthetic primary treated sewage effluent (PTSE), real BTSE and real PTSE. The main aims of this study are to verify and compare the efficiency of DOC removal by GAC (adsorption) and acclimatized GAC (bioadsorption). The results indicated that the performance of bioadsorption was significantly better than that of adsorption in all cases, showing the practical use of biological granular activated carbon (BGAC) in filtration process. The most significance was observed at a real PTSE with a GAC dose of 5g/L, having 54% and 96% of DOC removal by adsorption and bioadsorption, respectively. In addition, it was found that GAC adsorption equilibrium was successfully predicted by a hybrid Langmuir-Freundlich model whilst integrated linear driving force approximation (LDFA)+hybrid isotherm model could describe well the adsorption kinetics. Both adsorption isotherm and kinetic coefficients determined by these models will be useful to model the adsorption/bioadsorption process in DOC removal of BGAC filtration system.     

The effect of bioturbation by polychaetes (Opheliidae) on benthic foraminiferal assemblages and test preservation

Biological activity such as burrowing can alter benthic foraminiferal shell preservation and may also modify benthic foraminiferal assemblages by vertical mixing, inducing sediment homogenization. Here, we analyse benthic foraminiferal assemblages and taphonomy of upper Miocene marine deposits from Conil de la Frontera (Cádiz, south‐western Spain). The deposits consist of marls displaying a pervasive alternation of intensively bioturbated beds dominated by Macaronichnus segregatis traces (ichnofabric index 4–5) and non‐bioturbated beds. Benthic foraminiferal assemblages are dominated by Cibicidoides mundulus and Cibicides refulgens, indicating that the marls were deposited on an oligotrophic, well‐oxygenated upper slope. The impact of burrowing on the preservation of benthic foraminiferal tests was tested using Q‐mode cluster analysis, which found two well‐differentiated groups of samples, one including the non‐bioturbated beds and the other encompassing the bioturbated ones. Fragmentation and recrystallization account for the differentiation of these groups, both being higher in the bioturbated sediments. Aggressive chemical digestion by the Macaronichnus trace‐makers, assumed to be a polychaete worm of the family Opheliidae, etched the microfossil shells, making them more vulnerable to fragmentation. Intense bioturbation favoured the circulation of pore fluids, encouraging recrystallization. Pervasive burrowing resulted in significant vertical reworking of microfossils. As a consequence, benthic foraminiferal assemblages in the bioturbated beds were homogenized in the mixed layer; that is, the uppermost layer of the substrate totally burrowed. The alternation of bioturbated and non‐bioturbated beds reflects episodic transfer of food particles down slope from shallower parts of the shelf as well as from the continent due to storms under otherwise homogeneous oligotrophic marine conditions.     

Intracellular flux analysis applied to the effect of dissolved oxygen on hybridomas

Quantitative estimates of intracellular fluxes and measurements of intracellular concentrations were used to evaluate the effect of dissolved oxygen (DO) concentration on CRL 1606 hybridoma cells in batch culture. The estimates of intracellular fluxes were generated by combining material balances with measurements of extracellular metabolite rates of change. Experiments were performed at DO levels of 60% and 1% air saturation, as well as under oxygen-limited conditions. Cell extracts were analyzed to evaluate the effect of DO on the intracellular concentrations of the glutamate dehydrogenase reactants, as well as the redox state of the pyridine nucleotides in the cytosol and mitochondria. The relationship between cell density and pyridine nucleotide redox state was also investigated. Dissolved oxygen concentration had a significant effect on nitrogen metabolism and the flux through glutamate dehydrogenase was found to reverse at low DO, favoring glutamate formation. The NAD in the cytosol and mitochondria was more reduced under low DO conditions while the cytosolic NAD was more oxidized at low DO. Cytosolic NAD was reduced at higher cell densities while the redox states of cytosolic NADP and mitochondrial NAD did not exhibit significant variation with cell density. These results point to the fundamental role of the intracellular oxidation/reduction state in cell physiology and the possibility of controlling physiological processes through modulation of the dissolved oxygen level or the oxidation/reduction potential of the culture.     

Acidity controls on dissolved organic carbon mobility in organic soils

Dissolved organic carbon (DOC) concentrations in surface waters have increased across much of Europe and North America, with implications for the terrestrial carbon balance, aquatic ecosystem functioning, water treatment costs and human health. Over the past decade, many hypotheses have been put forward to explain this phenomenon, from changing climate and land management to eutrophication and acid deposition. Resolution of this debate has been hindered by a reliance on correlative analyses of time series data, and a lack of robust experimental testing of proposed mechanisms. In a 4 year, four‐site replicated field experiment involving both acidifying and deacidifying treatments, we tested the hypothesis that DOC leaching was previously suppressed by high levels of soil acidity in peat and organo‐mineral soils, and therefore that observed DOC increases a consequence of decreasing soil acidity. We observed a consistent, positive relationship between DOC and acidity change at all sites. Responses were described by similar hyperbolic relationships between standardized changes in DOC and hydrogen ion concentrations at all sites, suggesting potentially general applicability. These relationships explained a substantial proportion of observed changes in peak DOC concentrations in nearby monitoring streams, and application to a UK‐wide upland soil pH dataset suggests that recovery from acidification alone could have led to soil solution DOC increases in the range 46–126% by habitat type since 1978. Our findings raise the possibility that changing soil acidity may have wider impacts on ecosystem carbon balances. Decreasing sulphur deposition may be accelerating terrestrial carbon loss, and returning surface waters to a natural, high‐DOC condition.     

Potential capacity of coprecipitation of dissolved organic carbon (DOC) with iron(III) precipitates

Hypolimnetic anoxic water of Lake Onogawa was subjected to aeration experiments. When the samples were agitated by magnetic stirrers for 24 h, dissolved oxygen increased from 0 to more than 7.6 mg l⁻¹, dissolved iron decreased from 98% to about 5% of the initial total iron, and from 32% to 48% of the dissolved organic carbon (DOC) disappeared. On the other hand, when the anoxic waters were left unstirred, dissolved oxygen increased from 0 to 2.2 mg l⁻¹, dissolved iron decreased from 98% to 31%, and 20% of the DOC disappeared within 48 h. Further 24-h incubation had little effect on the DOC loss, although dissolved oxygen increased to 3.9 mg l⁻¹ and dissolved iron decreased to 5%. These rates of DOC disappearance are too large to be explained by bacterial decomposition. It is quite conceivable that a part of the DOC is coprecipitated with iron(III) precipitates. When Fe(II) in the anoxic hypolimnion is oxidized by autumnal water mixing, probably anoxic water is mixed with aerobic water. The anoxic water must receive oxygen from the aerobic water during this mixing and be simultaneously diluted with the aerobic water. Because the present experimental conditions, especially the stirred one, significantly differ from in situ conditions, the present results are thought to be a potential capacity of DOC coprecipitation.     

Biological availability and humic properties of dissolved organic carbon in Lake Balaton (Hungary)

The nursery role of the Mondego estuary for marine fish species was studied between June 2003 and May 2004. The spatial and temporal distribution and abundance patterns of 0-group Dicentrarchus labrax (Linnaeus, 1758), Platichthys flesus (Linnaeus, 1758) and Solea solea (Linnaeus, 1758) were analyzed based on monthly sampling surveys in five stations along the estuarine gradient. Fishing took place during the night at low water of spring tides, using a 2 m beam trawl. The spatial patterns of estuarine colonization were different according to species. D. labrax showed a wider distribution, but the main nursery ground was the same as for S. solea. Highest densities of S. solea juveniles were found in oligohaline areas, with muddy bottoms and high benthic invertebrates availability, while P. flesus occurred mainly in the sandy uppermost areas. D. labrax was found in both these areas. Fish abundance in the estuary mainly reflected seasonal changes.     

Environmental impacts on the benthic foraminiferal fauna in nearshore ecosystems

This review presents data on how natural and anthropogenic factors affect species composition, abundance, and test morphology of benthic foraminifera of the world oceans. Major emphasis is placed on high sensitivity of foraminifera to changes in the state of the environment, particularly in nearshore zones under anthropogenic impact. It is shown that benthic foraminifera can provide indicators of environmental conditions in marine ecosystems. The effects of mollusk and salmon aquaculture activities on the composition and distribution of foraminifera are considered. It is stressed that a distinction must be made between foraminiferal test morphology variations in response to natural and anthropogenic impacts.     

Recent benthic foraminiferal assemblages in deep high-energy environments from the Gulf of Cadiz (Spain)

The benthic environment in the Gulf of Cadiz, north-eastern Atlantic, is strongly affected by the Mediterranean outflow water undercurrent (MOW) which flows northwards along the western Iberian Margin at 500–1500 m water depth. Foraminiferal census counts of living and dead assemblages from 27 surface samples ranging from 103 to 1917 m water depth, and the examination of hard substrates reveal a close correlation of the fauna with the local hydrography and sediment facies. Four different faunal groups are separated by factor analysis of the living fauna. Assemblage 1 contains typical lower slope species and dominates samples from the lower MOW core layer and in the North Atlantic deep water below. Shelf edge foraminifera are common in assemblage 2a which shows the highest proportions in samples from 103 to 272 m. Assemblage 2b is dominated by upper slope species and suspension-feeders that are frequent in the upper MOW core layer and in distal settings between 396 and 901 m. Species from assemblage 3 prefer epibenthic habitats and are recorded with high proportions exclusively in the immediate flow paths of the upper MOW between 496 and 881 m. Colonisation structures and species composition of epibenthic assemblages from the proximal facies largely differ from those in distal settings. In general, epibenthic foraminifers only use elevated substrates under the influence of near-bottom flow. Under high current velocities, epibenthic foraminifers prefer large and heavy objects. They colonise high attachment levels where a maximum yield of advected food particles can be achieved. In distal settings at lower flow velocities, the elevation height does not exceed 20 mm above the surrounding sediment surface. This level is related to a hydrologic transition layer with high concentrations of suspended particles. The comparison of microhabitat preferences and faunal structure under high and low current velocities reveal that substrate stability may be a confining environmental variable for endobenthic and shallow epibenthic foraminifers. The observations also indicate that the preferential settling height of epibenthic foraminifera is related to the highest lateral flux rates of food particles within reach from the sea floor. A dynamic selection of elevated microhabitats is only used by 7.8% of all species recognised in the Gulf of Cadiz area.     

Effect of biomass adaptation to biodegradation of dissolved organic carbon in water

In the present study the time of adaptation of fixed biomass for biodegradation of natural organic matter was investigated. The experiments were done in columns that are usually used for rapid determination of biodegradable dissolved organic carbon (BDOC). The biomass was adapted to samples with different concentrations of organic substances before measurements by pumping water to be investigated through the columns for several days. The time of adaptation was dependent on the initial concentration of the organic matter in the water sample. The adaptation time increased from 6 to 24 h with increase of concentration of acetate solution from 2 to 10 mg/l, thus adaptation rate decreased simultaneously from 0.28 to 0.11 min⁻¹. In natural water samples with the initial concentration in the range from 4.61–10.82 mg/l of dissolved organic carbon (DOC) the maximal adaptation time was less than 24 h. During the adaptation period the increase in reproducibility and decrease in the standard deviation was observed. The study showed that adaptation of column to the different concentration of organic matter in water sample is necessary in order to decrease the bias in BDOC measurements when using columns tests.     

Effect of dissolved organic carbon quality on microbial decomposition and nitrification rates in stream sediments

1. Microbial decomposition of dissolved organic carbon (DOC) contributes to overall stream metabolism and can influence many processes in the nitrogen cycle, including nitrification. Little is known, however, about the relative decomposition rates of different DOC sources and their subsequent effect on nitrification. 2. In this study, labile fraction and overall microbial decomposition of DOC were measured for leaf leachates from 18 temperate forest tree species. Between 61 and 82% (mean, 75%) of the DOC was metabolized in 24 days. Significant differences among leachates were found for labile fraction rates (P < 0.0001) but not for overall rates (P=0.088). 3. Nitrification rates in stream sediments were determined after addition of 10 mg C L^–1 of each leachate. Nitrification rates ranged from below detection to 0.49 μg N mL sediment^–1 day^–1 and were significantly correlated with two independent measures of leachate DOC quality, overall microbial decomposition rate (r=–0.594, P=0.0093) and specific ultraviolet absorbance (r=0.469, P=0.0497). Both correlations suggest that nitrification rates were lower in the presence of higher quality carbon. 4. Nitrification rates in sediments also were measured after additions of four leachates and glucose at three carbon concentrations (10, 30, and 50 mg C L^–1). For all carbon sources, nitrification rates decreased as carbon concentration increased. Glucose and white pine leachate most strongly depressed nitrification. Glucose likely increased the metabolism of heterotrophic bacteria, which then out‐competed nitrifying bacteria for NH₄⁺. White pine leachate probably increased heterotrophic metabolism and directly inhibited nitrification by allelopathy.     

Sediment oxygen demand and benthic foraminiferal faunas in the Arabian Gulf: A test of the method on a siliciclastic substrate

In this study, we investigated the relationship between environmental parameters (water and sediment) and benthic foraminiferal assemblages found in nearshore siliciclastic sediment in the Arabian Gulf. Nearshore marine water and sediment samples were collected from a beach on the Gulf of Bahrain located south of Al Khobar, Saudi Arabia. The water samples were analyzed for biochemical oxygen demand (BOD₅) and other chemical analyses. The sediment samples were tested for sediment oxygen demand (SOD) and heavy metal analysis. Results showed the BOD₅ levels were below the detection limit (<1 ppm), while the mean SOD value was 0.97 ± 0.08 g/m²·day. The water and sediments were unpolluted and free of eutrophic enrichment, while the sediment was anoxic. The two most common genera in the benthic foraminiferal assemblage, Ammonia and Elphidium, are typical of shallow water sandy substrates. This is the first reported comparison between SOD and benthic foraminiferal assemblages.     

海洋异养细菌利用溶解有机碳的定量评估

【目的】惰性溶解有机碳(refractory dissolved organic carbon,RDOC)是海洋总有机碳的主体组分,RDOC在深海中可保存数千年,构成了巨大的碳储库,在调节气候变化中有重要作用。但RDOC的定量评估尚未有统一的标准方法。通过测定环境中能被异养细菌利用的溶解有机碳(biodegradable DOC,BDOC)可以反过来评估RDOC的量。本文对BDOC测定中一些关键步骤进行验证,为制定海洋RDOC评估标准奠定基础。【方法】本文评估了3种过滤方式及5种滤膜对DOC测定的影响,并评估了瓶子效应和稀释效应对细菌生长和DOC利用的影响。【结果】研究发现,(1) GF/F滤膜、GF-75滤膜、聚四氟乙烯(PTFE)滤膜(孔径0.2μm)、聚碳酸酯(PC)滤膜(孔径0.2μm)和聚四氟乙烯材质针孔过滤器(HA)(孔径0.2μm) 5种滤膜不会引入DOC污染;抽滤过滤和重力过滤方式过滤效果稳定、无污染,而在线过滤效果不稳定,易污染;(2)不同大小培养体系(30–480 mL;表面积/体积比为:1.64–0.67 cm–1)之间的细菌生长速率和DOC利用量没有显著性差异;(3)培养体系稀释度越高,细菌生长速率越高,对数生长期细菌丰度及DOC利用量越低。【结论】综合考虑,建议BDOC和RDOC测定实验中采用抽滤过滤的方式及不进行稀释的培养体系;常用的滤膜和培养体积对BDOC评估无显著影响。结合研究结果,我们提出了评估海洋RDOC的方法。