Isozyme variation and species relationships in the genus Lolium L. (ryegrasses,Graminaceae)

Thirty-two natural populations belonging to the eight species of the genus Lolium (ryegrass) or to Festuca pratensis (meadow fescue) were recorded for allelic frequencies at 13 isozyme loci. Cultivated ryegrass (L. perenne and L. multiflorum), meadow fescue, and the annual L. rigidum, are true outbreeders. The other species are true inbreeders, except for L. canariense, which shows a moderate level of cross fertilisation (20%). Hierarchical clustering from Nei's unbiased distance leads to four groups. The three self-pollinating, weed species, L. temulentum, L. remotum and L. persicum, belong to the first cluster, which is the most differentiated one. The second cluster comprises L. multiflorum, L. subulatum and most populations of L. rigidum. All L. perenne populations belong to the third cluster, as do two of L. rigidum. The average genetic distance within the L. perenne group is very low. Surprisingly, the fourth cluster groups together L. canariense and Festuca pratensis. The data suggest that L. rigidum is the species with the greatest diversity, and could be a common ancestor of the genus. Knowledge of historical processes of domestication could help to calibrate the molecular clock.     

Allozyme variation within and between populations inLolium (Poaceae)

Isozyme analysis was used to determine genetic variation within and between populations of sevenLolium species. All populations from the inbreeding species (L. temulentum, L. remotum, L. loliaceum, andL. persicum) were completely fixed for all enzymes scored. They also contained, for four of the five enzyme systems studied, exactly the same allelic variant. The three cross-breeding species showed large within-population variation and much less between-population variation. The great similarity of the allozymic variants found in all species, made the division of the genusLolium into species on basis of allozymic data difficult. It was not possible to separate the different inbreeding species from each other. Within the cross-breeding groupL. multiflorum andL. rigidum could be distinguished fromL. perenne. L. multiflorum, andL. rigidum could, with more difficulty, also be separated from each other. Allelic variation could have more relation with the provenance of the populations than with taxonomic classification.Genetic variation inLolium spp. II. For first part see Pl. Syst. Evol. 188: 87–99.     

Morphological variation inLolium (Poaceae) as a measure of species relationships

Analysis of morphological and phenological data for determining the genetic variation within sevenLolium species led to the recognition of two groups within this genus. One group, containing the two inbreeding speciesL. temulentum andL. persicum, was clearly distinct from all other species. Strong morphological and phenological intergradation was found between both species. The cross-breeding species,L. perenne, L. rigidum, andL. multiflorum, formed another group. Little differentiation was found between these species, though they were distinct. Two inbreeding species,L. loliaceum andL. remotum, were clearly distinct from each other and the two groups.L. loliaceum had an isolated position and was most related toL. rigidum. L. remotum had an intermediate position between the cross-breeding and inbreeding species, and was almost equally distant from all three cross-breeding species.Genetic variation inLolium spp. I.     

New chloroplast microsatellite markers suitable for assessing genetic diversity of Lolium perenne and other related grass species

Background and Aims

Lolium perenne (perennial ryegrass) is the most important forage grass species of temperate regions. We have previously released the chloroplast genome sequence of L. perenne ‘Cashel’. Here nine chloroplast microsatellite markers are published, which were designed based on knowledge about genetically variable regions within the L. perenne chloroplast genome. These markers were successfully used for characterizing the genetic diversity in Lolium and different grass species.

Methods

Chloroplast genomes of 14 Poaceae taxa were screened for mononucleotide microsatellite repeat regions and primers designed for their amplification from nine loci. The potential of these markers to assess genetic diversity was evaluated on a set of 16 Irish and 15 European L. perenne ecotypes, nine L. perenne cultivars, other Lolium taxa and other grass species.

Key Results

All analysed Poaceae chloroplast genomes contained more than 200 mononucleotide repeats (chloroplast simple sequence repeats, cpSSRs) of at least 7 bp in length, concentrated mainly in the large single copy region of the genome. Nucleotide composition varied considerably among subfamilies (with Pooideae biased towards poly A repeats). The nine new markers distinguish L. perenne from all non-Lolium taxa. TeaCpSSR28 was able to distinguish between all Lolium species and Lolium multiflorum due to an elongation of an A₈ mononucleotide repeat in L. multiflorum. TeaCpSSR31 detected a considerable degree of microsatellite length variation and single nucleotide polymorphism. TeaCpSSR27 revealed variation within some L. perenne accessions due to a 44-bp indel and was hence readily detected by simple agarose gel electrophoresis. Smaller insertion/deletion events or single nucleotide polymorphisms detected by these new markers could be visualized by polyacrylamide gel electrophoresis or DNA sequencing, respectively.

Conclusions

The new markers are a valuable tool for plant breeding companies, seed testing agencies and the wider scientific community due to their ability to monitor genetic diversity within breeding pools, to trace maternal inheritance and to distinguish closely related species.     

B-CHROMOSOMES,THEIR ORIGIN AND RELATION TO MEIOSIS IN INTERSPECIFIC LOLIUM HYBRIDS

The following Lolium species were shown to have 14 chromosomes: L. canariensis Steud. (= L. gracile Parl.), L. loliaceum (Bory and Chaub.) Hand.-Mazz., L. multiflorum Lam., L. perenne L., and L. temulentum L. B-chromosomes in addition to the normal complement were observed during metaphase I and anaphase I for L. persicum Boiss. and Hohen., L. remotum Schrank, L. rigidum Gaud., L. strictum Presl. (= L. rigidum?), and for several synthesized interspecific hybrids. General absence of B-chromosomes in diakinesis suggested that they originated by misdivision of A-chromosomes during prometaphase I. The B-chromosomes reached a maximum of eight but the number varied for microsporocytes of the same plant. B-chromosomes appeared spontaneously in progenies from sibbing of hybrid plants without supernumeraries but were also eliminated in the F₂ from other sibbings. Degree of chromosome pairing during meiosis was unrelated to the subsequent presence of B-chromosomes. Normal pairing of seven bivalents was typical for L. perenne × L. multiflorum, L. perenne × L. rigidum, L. multiflorum × L. loliaceum, and L. rigidum × L. loliaceum. Between five and seven bivalents were recorded for L. multiflorum × L. persicum, L. multflorum × L. remotum, L. multiflorum × L. strictum, L. rigidum × L. persicum, L. rigidum × L. remotum, L. rigidum × L. strictum, and L. rigidum × L. temulentum. The results indicated that these Lolium species have a common and generally undifferentiated genome suggesting relatively recent speciation.     

Photosynthesis and Photorespiration in Lolium multiflorum and Lolium perenne

The response of net photosynthesis to changing light-flux densityby leaves of Lolium multiflorum (S. 22) and L. perenne (S. 321)is more adequately described by current models when a term allowingfor photorespiration is included. The magnitude of this termwas determined from the changes in the slope of the light-responsecurves for net photosynthesis. A pseudo first-order rate-constantfor photorespiration, and a pseudo second-order rate-constantfor photosynthesis calculated by this technique for L. multiflorumwere found to be similar to corresponding parameters calculatedfrom light-compensation-point measurements using a simple modeldescribed by Brown (1969). The relative magnitudes of respirationand photosynthesis at light saturation for both Lolium specieswere similar to reported values for other temperate species(Lake, 1967). Two selection lines of L. perenne (S. 321) with contrastingdry-matter yields were found to have the same parameters forrespiration and photosynthesis.     

Development of novel microsatellite markers for the grassland species Lolium multiflorum,Lolium perenne and Festuca pratensis

Twelve microsatellite markers were isolated from Lolium multiflorum. Allelic variability and cross‐species amplification were assessed on 16 individuals of each of the three grassland species L. multiflorum, Lolium perenne and Festuca pratensis. Cross‐species amplification success was 100% for L. perenne and 83% for F. pratensis. The number of alleles detected ranged from one to 14 with an average of 3.4. While three microsatellite loci were polymorphic in all three species, one marker produced species‐specific alleles in all three species. These microsatellite markers provide a valuable tool for population genetic studies within and among species of the Festuca–Lolium complex.     

Incidence ofFusaria and occurrence of selected Fusarium mycotoxins on Lolium spp. in Germany

Test plantings with varieties ofLolium multiflorum andL perenne were harvested 4 to 7 times a year in 1991 and 1992. Samples were checked for the presence ofFusaria, the mycotoxins zearalenone, T-2 toxin, and diacetoxyscirpenol (DAS). Spectrum of species and the incidence ofFusaria and fusariotoxins are discussed in relation to the influencing factors site, variety ofLolium, harvesting time and year. Depending on these factors, 41 % to 100 % of the samples wereFusarium positive. Differences in infestation with Fusarium among varieties ofLolium perenne were dependent on location and did not correlate with yield. The six species ofFusarium pathogenic toLolium spp. (F. graminearum, F. culmorum, F. avenaceum, F. oxysporum, F. solani, and F. acuminatum) totaled 35.7 % of all the isolated strains. 14 species could be isolated fromLolium samples (descending frequency):F. culmorum, F. sambucinum, F. equiseti, F. acuminatum, F. semitectum, F. oxysporum, F. subglutinans, F. avenaceum, F. sporotrichioides, F. proliferatum, F. tricinctum, F. anthophilum, F. dimerum and F. graminearum. For the detection ofFusaria a promising new immunological method is presented. It is based on the genus specific production of exopolysaccharides byFusarium species. Mycotoxin contents in grass ranged from 0.01 to 4.75 ppm for zearalenone with 67 % positive samples and 0.3 % samples above 1 ppm, 0.04 to 2.78 ppm for T-2 toxin with 25 % positive samples and 2.8 % samples above 1 ppm, and 0.003 to 0.06 for DAS with 21.6 % positive samples. In silages, no T-2 toxin was detectable. IsolatedFusarium strains were checked for the ability to produce the mycotoxins zearalenone, T-2 toxin and DAS in culture. Most of the strains were positive for at least one of the toxins.     

Anchored simple-sequence repeats as primers to generate species-specific DNA markers in Lolium and Festuca grasses

Simple-sequence repeats (SSRs) comprising three tetranucleotide repeat sequences with two-base ’anchors’, namely 5′-(AGAC)₄GC, 5′-AC(GACA)₄ and 5′-(GACA)₄GT, were used in PCR reactions as primers to develop inter-SSR DNA fingerprints of the outbreeding grass species Lolium multiflorum, L. perenne, Festuca pratensis and F. arundinacea. Each species was represented by DNA samples from 3 to 6 varieties. In all four species distinctive species-specific DNA profiles were produced that were common across a number of varieties despite their diverse origin. While the fingerprints of the two ryegrasses, L. multiflorum and L. perenne, were the most similar, a number of inter-SSR DNA markers were generated that enabled them to be distinguished from each other. Some slight variations were found between varieties, which provided putative variety-specific markers for cultivar identification. In addition, variations in the DNA profiles of the genotypes of L. multiflorum and F. pratensis were examined, and the results showed that variety-specific fingerprints are integrated patterns made up from the profiles of individual genotypes. Amongst the primers used, AC(GACA)₄ generated the best distinction between Lolium and Festuca individuals and provides an effective new tool for genome identification. A number of species-discriminating sequences, ranging in size between 550 bp and 1,600 bp, were cloned: three clones for F. pratensis, one clone for L. multiflorum and one clone for F. arundinacea. A F. pratensis fragment pFp 78H582 was sequenced. Southern hybridization confirmed the presence of this fragment in F. arundinacea (which contains one genome of F. pratensis), but no homology was found with L. multiflorum. However, a F. arundinacea clone amplified with (GACA)₄GT, pFa 104H1350, was found to be unique to the F. arundinacea genome. Received: 23 June 1999 / Accepted: 27 August 1999     

Molecular analysis of species of Tulipa L. from Iran based on ISSR markers

Molecular characterization of Tulipa L. species can elucidate the relationships among the species and provide more information about the taxonomy of this valuable genus. In this study, the genetic relationship among 39 Tulipa accessions from Khorassan and Yazd Provinces, located in east and northeast Iran, were analyzed using inter-simple sequence repeat (ISSR) primers. Ten selected ISSR primers from 20 screened primers generated a total of 97 polymorphic DNA bands. Unweighted pair-group method of cluster analysis based on Dice similarity values separated the accessions into nine groups. Seven species were recognized within these groups, and T.?micheliana Hoog was the most frequently encountered species. The subgroups formed within both T.?micheliana and T.?lehmanniana Merckl. revealed a low level of diversity within these species. T.?biebersteiniana Schultes & Schultes fil. and T.?biflora Pallas accessions made a separate clusters. The grouping of accessions was generally consistent with principal coordinate analysis (PCA) and clearly showed the position of species in the subgenera and sections of Tulipa. These results clearly showed the usefulness of DNA fingerprinting for identification of Tulipa accessions, and it is imperative to collect and characterize more genetic variability from the other distribution areas of this genus.     

Reproductive biology and genetic population structure of two alien Lolium species inhabiting the sandy coasts of Japan

Understanding the characteristics of alien species is a prerequisite for any biological study or anti-invasion management strategy. Lolium rigidum (Poaceae) is an alien species that has become naturalized on the sandy coasts of Japan; however, it exhibits extensive morphological variation, leading to speculation that several taxa of Lolium have become naturalized. Here, we compared the morphology, reproductive biology and genetic structure of this Lolium species by growing individuals from different locations in the same environment to clarify whether the observed morphological variation is genetically based or is caused by intraspecific variation as a result of environmental differences. Principle component analyses of 11 morphological traits separated the study species into two types. Bagging experiments showed that one type exhibited an outcrossing life history, whereas the other type selfed exclusively. Nuclear DNA microsatellite analyses supported this distinction between these morphological types, with no intermediate individuals being found. The outcrossing type exhibited high genetic diversity, whereas the selfing type exhibited almost no polymorphism, reflecting the differences in their breeding systems. Moreover, both types differed from the economically important outcrossing species Lolium multiflorum and Lolium perenne. These two types of Lolium are expected to have different introduction histories and invasive potential on the coasts of Japan. In conclusion, it is important to distinguish between these types through additional biological studies to design effective control measures.     

Selection for Nitrogen Responses in Lolium

Lolium populations from a diallel cross were tested for heritabilityof response to nitrogen in sand culture, in pots of soil andfinally in the field. Heritability of response was found insand culture for several growth parameters including leaf areaand shoot dry weight. Response in pots of soil varied significantlybetween populations, but in a small experiment heritabilitywas not shown to be significant. Selection of individual genotypes within the diallel populationswas then carried out simultaneously for nitrate uptake fromsolutions and for growth in pots. The selected plants were finallytested for nitrogen response in simulated swards in the field.L. perenne plants did not differ after selection for high orlow uptake, but L. multiflorum and interspecific hybrids producedlines which showed significant differences in nitrogen response. A second cycle of selection confirmed the lack of variationin the L. perenne lines chosen, and revealed a complex situationin L. multiflorum whereby the effects of selection were apparentlyreversed. In the L. perenne x L. multiflorum hybrid lines, however,the large differences between high and low response selectionswere maintained. High response plants had broad pale leaveswhile low response plants had rather narrow dark leaves.     

Revalidation and redescription of Potamon elbursi Pretzmann, 1976 (Brachyura, Potamidae) from Iran, based on morphology and genetics

In the current study, we redescribe and revalidate a freshwater crab species of the genus Potamon Savigny, 1816, from northern Iran. Potamon elbursi Pretzmann, 1962, differs from the species it has been synonymised with, Potamon persicum Pretzmann, 1962, mainly by the shape of the first gonopods in males. Consistent and marked genetic divergence was also recognised in the mitochondrial 16S rRNA and cytochrome oxidase subunit I genes. This study elevates P. elbursi to species rank and therefore increases the number of valid species of the genus Potamon to a total of twenty-two.     

Transgenic ryegrasses (Lolium spp.) with down-regulation of main pollen allergens

Ryegrass pollen (Lolium species) is a widespread source of air-borne allergens and is a major cause of hayfever and seasonal allergic asthma, which affect approximately 25% of the population in cool temperate climates. The main allergens of ryegrass pollen are the proteins Lol p 1 and Lol p 2. These proteins belong to two major classes of grass pollen allergens to which over 90% of pollen-allergic patients are sensitive. The functional role in planta of these pollen allergen proteins remains largely unknown. Here we describe the generation and analysis of transgenic plants with reduced levels of the main ryegrass pollen allergens, Lol p 1 and Lol p 2 in the most important worldwide cultivated ryegrass species, L. perenne and L. multiflorum. These transgenic plants will allow the study of the functional role in planta of these pollen proteins and the determination of potential for development of hypo-allergenic ryegrass cultivars.     

Taxonomic revision and phytogeographic studies in Euphorbia (Euphorbiaceae) in the Khorassan provinces of Iran

This study is focused on the genus Euphorbia L. in a part of northeast Iran, viz. the three Khorassan provinces. Since there are many taxa of Euphorbia in Iran which are used in different industries and have significant effects on human and non‐human life it is important to revise their taxonomy. With about 90 species, following Turkey with 91 species, Iran is the second richest country for Euphorbia in Asia. Of these, 30 species are distributed in the Khorassan provinces. This is the first comprehensive work on the genus in this region. According to ‘Flora Iranica’, there are 17 species of Euphorbia in northeast Iran, while according to our results, there are 30 species of Euphorbia in the Khorassan provinces alone. In addition to various new taxonomic and biogeographic results, a new species, viz. E. chamanbidensis, is described. Euphorbia chamanbidensis is closely related to E. aucheri, but seed micro‐morphological characters differentiate them. Two identification keys to the Euphorbia species of the studied area are provided, one based on macro‐morphological characters and another based on seed micro‐morphological characters. Phytogeographic analysis and distribution maps for all species are also presented.     

The use of a triploid hybrid for introgression in Lolium species

Summary Triploid hybrids of Lolium multiflorum (4x) x L. perenne (2x) behaved cytologically as autotriploids but the segregation of isozyme variants did not always agree with the expected trisomic ratios. The overall effect of these deviations from expectation was a greater proportion than expected of diploid progeny from the cross L. multiflorum (2x) x triploid hybrid which did not include any of the L. perenne alleles at the three marker isozyme loci. The possible mechanisms for these aberrant segregation ratios are discussed together with the advantages of the crossing scheme to accelerate the recovery of the genotype of the recurrent parent in a backcrossing programme to transfer characters from one species to another.     

Simulated nitrogen deposition enhances the performance of an exotic grass relative to native serpentine grassland competitors

Previous research suggests that atmospheric nitrogen (N) deposition may facilitate the invasion and persistence of exotic plant species in serpentine grasslands, but the relative impact of increased N availability on native and exotic competitive dynamics has yet to be clearly elucidated. In this study, we evaluated how increased N deposition affects plant performance and competitive dynamics of five native grasses and forbs (Plantago erecta, Layia gaillardioides, Lasthenia californica, Vulpia microstachys, and Cryptantha flaccida) and the most common invasive grass in Bay Area serpentine grasslands, Lolium multiflorum. Using a growth chamber system, we exposed Lolium in monoculture, and native species grown both in monoculture and in competition with the exotic Lolium, to all four possible combinations of gaseous nitrogen dioxide (NO₂; a dominant atmospheric N pollutant) and soil ammonium nitrate (NH₄NO₃). In monocultures, gaseous NO₂ and soil N addition each increased shoot biomass in Lolium and the natives Layia and Cryptantha. Lolium competitive ability (mean relative yield potential??RYP) increased in response to NO₂ addition plus soil N addition against all native competitors. Lolium and most native species did not show differences in photosynthetic rate and stomatal conductance in response to N addition. Our findings indicate that increasing N deposition and subsequent N accumulation in the soil may confer a competitive advantage to the exotic Lolium over native species by stimulating greater biomass accumulation and N allocation to photosynthetic tissue in the invader.     

Floral morphology and systematics of the genus Thottea Rottb. (Aristolochiaceae) from the Western Ghats, India

The medicinal genus Thottea (Aristolochiaceae) is represented in the Western Ghats, India, by eight species, seven of which are endemic to this region. In the present study, diversity in floral structure and organization of these eight species was analyzed from a systematic perspective. Floral morphology was thoroughly studied and discussed with emphasis on 16 qualitative and 11 quantitative characters. Statistical tools such as UPGMA cluster analysis, PCoA, PCA, and one-way ANOVA were used for elucidating species boundaries and inter-relationships. Significance of the selected qualitative and quantitative characters for species level systematics was revealed by the PCA and one-way ANOVA. Based on the nature of sepals (free/fused), two species groups were identified (first group with T. duchartrei and T. idukkiana, and the second group with the remaining six species). By considering the number and arrangement of stamens, yet another species grouping was proposed (one with T. abrahamii and T. dinghoui, and the other with the remaining six species). The UPGMA phenogram and the PCoA scatter plot clearly pointed out the existence of two species groups: the first group with T. abrahamii, T. barberi, T. dinghoui, T. ponmudiana, T. siliquosa, and T. sivarajanii, and the second one with T. duchartrei and T. idukkiana. With regard to the morphometric tools and the taxonomic key, it does not seem possible to distinguish T. abrahamii from T. dinghoui, and T. idukkiana from T. duchartrei.     

Development of intron-flanking EST markers for the Lolium/Festuca complex using rice genomic information

DNA markers able to distinguish species or genera with high specificity are valuable in the identification of introgressed regions in interspecific or intergeneric hybrids. Intergeneric hybridization between the genera of Lolium and Festuca, leading to the reciprocal introgression of chromosomal segments, can produce novel forage grasses with unique combinations of characteristics. To characterize Lolium/Festuca introgressions, novel PCR-based expression sequence tag (EST) markers were developed. These markers were designed around intronic regions which show higher polymorphism than exonic regions. Intronic regions of the grass genes were predicted from the sequenced rice genome. Two hundred and nine primer sets were designed from Lolium/Festuca ESTs that showed high similarity to unique rice genes dispersed uniformly throughout the rice genome. We selected 61 of these primer sets as insertion-deletion (indel)-type markers and 82 primer sets as cleaved amplified polymorphic sequence (CAPS) markers to distinguish between Lolium perenne and Festuca pratensis. Specificity of these markers to each species was evaluated by the genotyping of four cultivars and accessions (32 individuals) of L. perenne and F. pratensis, respectively. Evaluation using specificity indices proposed in this study suggested that many indel-type markers had high species specificity to L. perenne and F. pratensis, including 15 markers completely specific to both species. Forty-nine of the CAPS markers completely distinguish between the two species at bulk level. Chromosome mapping of these markers using a Lolium/Festuca substitution line revealed syntenic relationships between Lolium/Festuca and rice largely consistent with previous reports. This intron-based marker system that shows a high level of polymorphisms between species in combination with high species specificity will consequently be a valuable tool in Festulolium breeding. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.