APPLICABILITY OF ITS DATA IN ROCCELLACEAE (ARTHONIALES,EUASCOMYCETES) PHYLOGENY

Abstract: The ability of the internal transcribed spacers (ITS regions) of ribosomal DNA to resolve phylogenetic relationships within the euascomycetous order Arthoniales, focusing on the family Roccellaceae was investigated. The effect of alignment on phylogenetic hypotheses was evaluated. A data matrix from the ITS regions was constructed from 33 specimens representing 14 genera, including the outgroup Arthothelium spectabile. Six different alignments were analysed cladistically using parsimony jackknifing. Most groups in the six trees were congruent and well supported under the different alignment settings. In a conservative analysis, where only unambiguously alignable regions were included, the resolution was low. These results indicate that the ITS regions contain phylogenetic structure, and all information, including the variable regions, should be utilised. A data matrix from the SSU rDNA sequences was constructed for the same taxa. The SSU rDNA tree was less resolved than the ITS trees. There were only minor conflicts between the two sources of data and an incongruence test confirmed that the ITS and SSU rDNA data matrices were not significantly incongruent. The six differently aligned data matrices generated from the ITS regions were each combined with the SSU rDNA data. Simultaneous analysis of the combined data sets is the best approach as it uses all available evidence. As with the ITS trees, most groups in the combined trees were congruent and well supported. The SSU rDNA provided resolution within one clade, otherwise the ITS sequences provided most of the signal in the combined analysis, both at the basal nodes and at the tips of the tree. Molecular data clearly indicates that the fruticose/crustose habits have evolved multiple times even in comparatively small groups as in the family Roccellaceae and that the characters such as fruticose-crustose may be overemphasized in morphological analyses.     

Distribution of acetylenic thiophenes in the pectidinae

The distribution and quantitative significance of biosynthetically related di- and ter-thiophenes from 27 species representing seven genera of the Pectidinae (Heliantheae) was investigated by reverse-phase HPLC. Adenophyllum, Chrysactinia and Nicolletia, three previously unstudied genera, were found to contain thiophenes for the first time. Four derivatives, 5-(4-hydroxy-1-butenyl)-2,2′-bithiophene (1), 5-(4-acetoxy-1-butenyl)-2,2′-bithiophene (2), 5-(3-buten-1-ynyl)-2,2′-bithiophene (3) and 2,2′:5′,2″-terthiophene (4) were common constituents in most species of Adenophyllum, Chrysactinia, Dyssodia, Hymenatherum, Nicolletia and Porophyllum. One additional compound, 5-methyl-2,2′:5′,2″-terthiophene (5), was also present in extracts of Adenophyllum, Dyssodia and Hymenatherum, but was not detected in any other genus. Acetylenic thiophenes were not found in any of the 18 species of Pectis examined.     

Chemical constituents from Panzeria alaschanica Kupr. (Labiatae)

In this paper, twenty-two compounds including twenty-one flavonoids (1–21) and one alkaloid (22) were isolated from Panzeria alaschanica, in which seventeen flavonoids (1–2, 5–11, 13–20) were isolated from P. alaschanica and four flavonoid p-coumaroylglucosides (15–18) from the genus Panzeria for the first time. The occurrence of flavonoid p-coumaroylglucosides and alkaloids might be employed as the common characteristic constituents of the genera Panzeria, Leonurus, Lagochilus, Lagopsis and Marrubium.     

New reports on flavonoids,benzoic- and chlorogenic acids as rare features in the Psychotria alliance (Rubiaceae)

Five flavonoid glycosides, three chlorogenic and one benzoic acid were isolated from leaves of seven species belonging to the genera Notopleura, Palicourea and Psychotria. In most species, common flavonol glycosides based upon quercetin and kaempferol were recorded, which corresponds well to literature data on other species of the Psychotria alliance. From Notopleura polyphlebia, however, the new dihydroflavonol glycoside (2R,3R)-7,4′-O-dimethyl-aromadendrin 5-O-β-d-apiofuranosyl-(1→6)-β-d-glucopyranoside (1) was isolated, which is remarkable in terms of both the structure of the aglycone as well as the rarity of apiose as sugar moiety. In addition to flavonoids, benzoic and chlorogenic acids are a common and frequently neglected feature in the alliance, but all appear to be of limited chemosystematic significance when compared to tryptamine-iridoid alkaloids prominently known from this group.     

Temporal pollen pattern in temperate trees: expedience or fate?

European forests are populated with a variety of wind‐pollinated tree species. Their pollen productivity and spatio‐temporal pattern are largely unknown. Long‐term data (17 years) collected at 22 sites across Austria were presented and the pollen production of 12 tree genera was analysed. We ranked the tree genera according to their pollen productivity taking actual tree abundances of the Austrian Forestry Inventory into account. The productivity varied strongly among tree genera with a maximum for Betula. Pollen production in Larix, Abies and Picea amounted to approximately 1/20, while in increasing order Salix, Quercus, Alnus, Populus and Fraxinus produced approximately 1/3 to 1/4 of the respective Betula estimate. In general, pollen quantity in broadleaves was higher than in conifers. We analysed the temporal pollen production pattern by means of hierarchical cluster analysis and identified three major groups: [(Fagus, Larix, Picea, Abies), (Alnus, Betula, Fraxinus)], [Carpinus],[Populus, Salix, Pinus, Quercus]. Distance matrices based on life‐history traits as well as molecular phylogeny were also constructed; they correlated significantly with each other by means of Mantel‐tests. However, there was no significant relationship between the distances on temporal pollen production with the other matrices. Intermittent or idiosyncratic pollen production was studied by means of deviation from expected means, skewness and spindle diagrams. We proposed that Fagus, Carpinus, Larix, Picea and Abies belong to ‘masting pollen producers’, while the remaining genera idiosyncratically produced pollen over the monitored period. Moreover we correlated the distance matrix of pollen production for each tree genus at each sampling site with respective ‘ecological distance matrices’ based on aerial and altitudinal distance among sites. Significant correlations were detected for tree genera (Fagus, Larix, Picea) which were also prone to pollen masting, thus indicating a Moran effect.     

A STUDY ON THE GENETIC VARIABILITY OF BIATORA HELVOLAUSING RAPD MARKERS

Abstract:Biatora helvola is a corticolous crustose lichen occurring in boreal and montane spruce and spruce-fir-beech forests. After the last glaciation, spruce reinvaded Europe from three refugia situated in the Carpathians, southeastern parts of the Alps and the Ural Mts., resulting in a slightly disjunct distribution. Our aim was to find out whether the glacial fragmentation of the distributional area of spruce is reflected by genetic differences in a typical spruce-forest lichen. Collections of Biatora helvola from Scandinavia and various parts of Central Europe were investigated using RAPD analysis. Algal free periclinal sections of the apothecia were obtained using a freezing microtome and transferred directly into PCR tubes. Six different RAPD primers were used. The data were analysed using PAUP*. It was shown that genetic differences between samples of B. helvola reflect the glacial disjunction of spruce in Europe.     

A preliminary phylogenetic analysis of the New World Helopini (Coleoptera,Tenebrionidae, Tenebrioninae) indicates the need for profound rearrangements of the classification

Helopini is a diverse tribe in the subfamily Tenebrioninae with a worldwide distribution. The New World helopine species have not been reviewed recently and several doubts emerge regarding their generic assignment as well as the naturalness of the tribe and subordinate taxa. To assess these questions, a preliminary cladistic analysis was conducted with emphasis on sampling the genera distributed in the New World, but including representatives from other regions. The parsimony analysis includes 30 ingroup species from America, Europe and Asia of the subtribes Helopina and Cylindrinotina, plus three outgroups, and 67 morphological characters. Construction of the matrix resulted in the discovery of morphological character states not previously reported for the tribe, particularly from the genitalia of New World species. A consensus of the 12 most parsimonious trees supports the monophyly of the tribe based on a unique combination of characters, including one synapomorphy. None of the subtribes or the genera of the New World represented by more than one species (Helops Fabricius, Nautes Pascoe and Tarpela Bates) were recovered as monophyletic. Helopina was recovered as paraphyletic in relation to Cylindrinotina. One Nearctic species of Helops and one Palearctic species of Tarpela (subtribe Helopina) were more closely related to species of Cylindrinotina. A relatively derived clade, mainly composed by Neotropical species, was found; it includes seven species of Tarpela, seven species of Nautes, and three species of Helops, two Nearctic and one Neotropical. Our results reveal the need to deeply re-evaluate the current classification of the tribe and subordinated taxa, but a broader taxon sampling and further character exploration is needed in order to fully recognize monophyletic groups at different taxonomic levels (from subtribes to genera).     

Pliocene Ilyocyprididae (Ostracoda) from the Ebro Basin (N. Spain)

A revision of the Pliocene representatives of the Ilyocyprididae genera Ilyocypris Brady and Norman, 1889, and Qinghaicypris Huang, 1979, obtained from lacustrine sediments of the Villarroya section (La Rioja, N. Spain) is presented in this work. Based on carapace morphology and morphometrics, the occurrence in Europe of the genus Qinghaicypris is discussed. This genus is represented in this material by a new species, Qinghaicypris riojensis nov. sp., which is described herein. The occurrence of Ilyocypris and Qinghaicypris within the lacustrine series of Villarroya is analysed in relation to the hydrological evolution of the water bodies, which were very likely climatically driven. Palaeoecological as well as palaeobiogeographical interest of those genera is pointed out in the context of the aquatorium that spread over big areas of Europe during the Pliocene.     

Chemical constituents from the roots and rhizomes of Silene tatarinowii Regel

Chemical investigation of the root and rhizome of Silene tatarinowii Regel led to the isolation of nine ecdysteroids (1–9) and one sterol (10). All the compounds were determined on the basis of MS and NMR and by comparison with those in the literature. All these compounds were isolated from S. tatarinowii for the first time. Furthermore, compounds 7–10 were isolated from Silene genus for the first time, of which compounds 7 and 8 were isolated from Caryophyllaceae family members for the first time. This is the first study to report the chemical constituents of S. tatarinowii and the chemotaxonomic relationships between Silene and other genera of Caryophyllaceae.     

Genome-enabled methods for predicting litter size in pigs: a comparison

Predictive ability of models for litter size in swine on the basis of different sources of genetic information was investigated. Data represented average litter size on 2598, 1604 and 1897 60K genotyped sows from two purebred and one crossbred line, respectively. The average correlation (r) between observed and predicted phenotypes in a 10-fold cross-validation was used to assess predictive ability. Models were: pedigree-based mixed-effects model (PED), Bayesian ridge regression (BRR), Bayesian LASSO (BL), genomic BLUP (GBLUP), reproducing kernel Hilbert spaces regression (RKHS), Bayesian regularized neural networks (BRNN) and radial basis function neural networks (RBFNN). BRR and BL used the marker matrix or its principal component scores matrix (UD) as covariates; RKHS employed a Gaussian kernel with additive codes for markers whereas neural networks employed the additive genomic relationship matrix (G) or UD as inputs. The non-parametric models (RKHS, BRNN, RNFNN) gave similar predictions to the parametric counterparts (average r ranged from 0.15 to 0.23); most of the genome-based models outperformed PED (r = 0.16). Predictive abilities of linear models and RKHS were similar over lines, but BRNN varied markedly, giving the best prediction (r = 0.31) when G was used in crossbreds, but the worst (r = 0.02) when the G matrix was used in one of the purebred lines. The r values for RBFNN ranged from 0.16 to 0.23. Predictive ability was better in crossbreds (0.26) than in purebreds (0.15 to 0.22). This may be related to family structure in the purebred lines.     

Mutual Exclusion between Fungal Species of the Fusarium Head Blight Complex in a Wheat Spike

Fusarium head blight (FHB) is one of the most damaging diseases of wheat. FHB is caused by a species complex that includes two genera of Ascomycetes: Microdochium and Fusarium. Fusarium graminearum, Fusarium culmorum, Fusarium poae, and Microdochium nivale are among the most common FHB species in Europe and were chosen for these experiments. Field studies and surveys show that two or more species often coexist within the same field or grain sample. In this study, we investigated the competitiveness of isolates of different species against isolates of F. graminearum at the scale of a single spike. By performing point inoculations of a single floret, we ensured that each species was able to establish independent infections and competed for spike colonization only. The fungal colonization was assessed in each spike by quantitative PCR. After establishing that the spike colonization was mainly downwards, we compared the relative colonization of each species in coinoculations. Classical analysis of variance suggested a competitive interaction but remained partly inconclusive because of a large between-spike variance. Further data exploration revealed a clear exclusion of one of the competing species and the complete absence of coexistence at the spike level.     

Revision of Disepalum (Annonaceae)

The relationship between the Asian generaDisepalum Hook. f. andEnicosanthellum Ban (Annonaceae) is examined in a revisionary study. Despite the disparate perianth morphologies of the two genera, other characters support inclusion of all species in a single genus with nine species. The monocarp stalks in all species are found to be derived from the receptacle rather than the ovary, and are thus not homologous with those found in most other Annonanceae genera. Cladistic analysis indicates that the species on the mainland of Asia and of montane habitats are more primitive than the species of the lowlands and of Sumatra and Borneo. Two new combinations,Disepalum petelotii andD. plagioneurum, are necessary as a result of merging the two genera, and one species,D. aciculare, is described as new.     

Phytochemical constituents from Neolamarckia cadamba (Roxb.) Bosser

Phytochemical study on Neolamarckia cadamba (Roxb.) Bosser has yielded ten indole alkaloids, neolarmarckine A-E (1–5), cadamine (6), 3β-isodihydrocadambine (7), angustine (8) and naulafine (9) and harmane (10). The structural elucidation of all the compounds were conducted based on the thorough analysis of spectroscopic data and comparison with reported data. The chemotaxonomic significance of all these compounds were summarized. Among all the indole alkaloids, compound 3–5 were new compounds and isolated from Neolamarckia cadamba (Roxb.) Bosser for the first time. Compounds 1 and 2 were only found in Neolamarckia species while compounds 6 and 7 were only isolated from the family of Rubiaceace. Besides, compound 8 has been found in six genera of Rubiaceae and two genera of Apocynaceae while compound 9 was isolated from Neolamarkia species for the first time. Compound 10 can be found in many genera of Rubiaceae and also more than ten families such as Zygophyllaceae, Cyperaceae, Passifloraceae, Bignoniaceae, Sapotaceae, Elaeagnaceae, Leguminosae, Loganiaceae, Apocynaceae, Combretaceae, Chenopodiaceae, Commelinaceae and Polygalaceae.     

Chemical constituents from the leaves and branches of Annona coriacea Mart. (Annonaceae)

The phytochemical investigation of the leaves and branches of Annona coriacea Mart. (Annonaceae) led to the isolation and characterization of eight compounds: five isoquinoline-derived alkaloids, including pukateine (1), liriodenine (4), anonaine (5), obovanine (6), and norisocorydine (7); one terpene lactone known as loliolide (3); one benzoic acid derivative, 2-methoxybenzoic acid (2), and 3,4,5-trimethoxyphenol (8). All compounds, except liriodenine, are being described for the first time in the species A. coriacea, and their chemophenetics relationships were discussed. The structures were elucidated by extensive analyses of 1D and 2D NMR (COSY, HSQC, and HMBC) spectroscopy in combination with MS, and the data were compared with literature values. The NMR dataset of pukateine and obovanine was reviewed. Our results showed that A. coriacea is a typical species of the Annonaceae family and an important source of aporphine alkaloids with chemophenetic relationships with Xylopia, Duguetia, Guatteria, Artabotrys, and Goniothalamus genera.     

Dihydroxylation of dehydroepiandrosterone in positions 7α and 15α by mycelial fungi

The ability of 485 fungal strains is studied for catalysis of the process of 7α, 15α-dihydroxylation of dehydroepiandrosterone (DHEA, 3β-hydroxy-5-androstene-17-one), a key intermediate of the synthesis of physiologically active compounds. The ability for the formation of 3β, 7α, 15α-trihydroxy-5-androstene-17-one (7α, 15α-diOH-DHEA) was found for the first time for representatives of 12 genera, eight families, and six orders of ascomycetes, eight genera, four families, and one order of zygomycetes, one genus, one family, and one order of basidiomycetes, and four genera of mitosporic fungi. The most active strains are found among genera Acremonium, Gibberella, Fusarium, and Nigrospora. In the process of transformation of DHEA (2 g/l) by strains of Fusarium oxysporum VKM F-1600 and Gibberella zeae BKM F-2600, the molar yield was 63 and 68%, respectively. Application of the revealed active strains of microorganisms opens prospects for the efficient production of key intermediates of synthesis of modern medical preparations.     

Evidence for several genomes in Helianthus

Forty taxa belonging to 36 species and four unclassified accessions of Helianthus were studied using RAPD technology. Single ten-mer primers were screened for those amplifying fragments common to several species. We found that when several species shared a common fragment, they belong to the same section of the genus. Moreover, we also found that some fragments are common to all species of the Helianthus. Most of the fragments were found to be of the same size in these species and to share the homology indicated by molecular hybridization. Out of 118 retained fragments, 33 were common to all Helianthus species, 56 were unique to perennial species of sects. Atrorubentes and Ciliares, 24 were unique to sect. Atrorubentes, 29 were unique to sect. Helianthus, whereas 0 were unique to sect. Ciliares. Each set of common or specific fragments was assumed to belong to a genome: (1)?the C genome carrying the fragments common to all species of the three sections, (2)?the H genome unique to sect. Helianthus, (3)?the P genome common to perennial species (sects. Atrorubentes and Ciliares), and (4)?the A genome unique to sect. Atrorubentes. The genomic structure was therefore HC for sect. Helianthus, CPA for sect. Atrorubentes, and CP? for sect. Ciliares. Molecular hybridizations with amplification products revealed homologies between Helianthus genomes and several other genera in the Helianthinae sub-tribe. The simple method used to characterize these fragments led to powerful tools for recognizing genomes which reconcile the section organization of the genus and the degree of difficulty in crossing perennial and annual forms.     

Neotropical Segregates from Sida L. (Malvaceae)

Three genera are segregated out ofSida as natural units,viz. Sidastrum E. G. Baker, enlarged from one species to seven,Krapovickasia nom. nov. including four species, andRhynchosida gen. nov. including two species, one described as new from Bolivia,R. kearneyi. Mericarp and calyx morphology are emphasized in delimiting these genera and in defining the residual genusSida, which now assumes a more natural character.     

Species Diversity and Distribution Patterns of the Ants of Amazonian Ecuador

Ants are among the most diverse, abundant and ecologically significant organisms on earth. Although their species richness appears to be greatest in the New World tropics, global patterns of ant diversity and distribution are not well understood. We comprehensively surveyed ant diversity in a lowland primary rainforest in Western Amazonia, Ecuador using canopy fogging, pitfall traps, baits, hand collecting, mini-Winkler devices and subterranean probes to sample ants. A total of 489 ant species comprising 64 genera in nine subfamilies were identified from samples collected in only 0.16 square kilometers. The most species-rich genera were Camponotus, Pheidole, Pseudomyrmex, Pachycondyla, Brachymyrmex, and Crematogaster. Camponotus and Pseudomyrmex were most diverse in the canopy, while Pheidole was most diverse on the ground. The three most abundant ground-dwelling ant genera were Pheidole, Solenopsis and Pyramica. Crematogaster carinata was the most abundant ant species in the canopy; Wasmannia auropunctata was most abundant on the ground, and the army ant Labidus coecus was the most abundant subterranean species. Ant species composition among strata was significantly different: 80% of species were found in only one stratum, 17% in two strata, and 3% in all three strata. Elevation and the number of logs and twigs available as nest sites were significant predictors of ground-dwelling ant species richness. Canopy species richness was not correlated with any ecological variable measured. Subterranean species richness was negatively correlated with depth in the soil. When ant species were categorized using a functional group matrix based on diet, nest-site preference and foraging ecology, the greatest diversity was found in Omnivorous Canopy Nesters. Our study indicates ant species richness is exceptionally high at Tiputini. We project 647–736 ant species in this global hotspot of biodiversity. Considering the relatively small area surveyed, this region of western Amazonia appears to support the most diverse ant fauna yet recorded.     

Statistical comparison of proximity matrices: applications in animal behaviour

Animal behaviour studies often require the diagnosis and statistical evaluation of patterns among individuals of a group. However, association values derived for all pairs of individuals are mathematically interrelated and, hence, difficult to evaluate. A general method of matrix comparison, called the Mantel test, is described which accounts for such interdependencies. In this test, two square difference matrices are compared to determine whether a statistical association exists between corresponding elements. For example, distances in one of the matrices might represent differences in songs for each pair of a group of birds, while distances in the other matrix could be the geographic distances between each of the same bird pairs; the test would assess whether or not birds close to one another have songs that are more similar than those pairs that are located further apart geographically. Distances in the matrices can be of a variety of sorts (depending on the application), including for instance geographic distances, morphological differences, or behavioural differences. The test has wide applicability in studies of animal behaviour, and we present three examples. First, dialects of splendid sunbirds (Nectarinia coccinigaster) were investigated to determine whether local or regional patterns of geographic variation in song were present, and whether birds with similar dialects were concentrated within the same habitat. Second, dominance hierarchies of white-throated sparrows (Zonotrichia albicollis) and dark-eyed juncos (Junco hyemalis oreganus) were analysed by constructing appropriate hypothesis matrices that were contrasted against a matrix summarizing behavioural interrelationships of flock members. In the third application, involving progressions of yellow baboons (Papio cynocephalus), an approach was developed to assess whether members of a given sex occur adjacent (or at least closer) to one another in progression order more often than expected by chance, and also whether individuals of a given sex tend to be found at or near the end of a progression more frequently than predicted. Other possible applications of the Mantel test are discussed, and a detailed computational example is included.