Genetic analyses of putative two-element systems regulating somatic mutability in Mutator-induced aleurone mutants of maize

The Mutator transposable element system (Mu) of maize has been responsible for the induction of numerous mutable aleurone mutants of maize. Unlike similar mutants induced by other transposable element systems, the mutability of Mu-induced mutants did not seem initially to be regulated by an independent autonomous or regulator element. However, in a continuing study of two Mu-induced a1 mutable mutants (a1-Mum2) and a1-Mum3, lines have been obtained that give evidence of an independently segregating regulator of somatic mutability. Data from several generations of crossing are presented indicating that intense somatic mutability in many of these stocks is under the control of an independent regulator. However, testing of other lines, which initially gave evidence of the presence of an independent regulator, were negative. Some of these latter lines could be expected to have Mutator elements that were modified (methylated) at sites recognized by certain restriction endonucleases. Modification of Mu elements, which is known to affect the expression of somatic mutability, might, at times, be responsible for producing conditions that mimic the segregation of an independent regulator. Lines with stable derivatives of the a1-Mum2 and a1-Mum3 can recover intense somatic mutability by crossing with germinally active Mutator stocks. Thus, active Mutator lines contain regulator elements and evidence is presented suggesting that such lines have multiple copies of these elements. Most a1- Mum2 and a1-Mum3 stocks segregating for a regulator do not have germinal Mutator activity. Thus the presence of one or a few putative regulator elements does not necessarily account for the high level of germinal activity in most Mutator stocks.     

Location dependent,intragenic recombination in maize

With the use of chromosome interchanges, the waxy (wx) locus on chromosome 9 has been relocated to various positions in the maize genome. Four wx alleles, wx ^C, wx ^B, wx ⁹⁰, and wx ^H21, were crossed to six chromosome translocation stocks (four with break points proximal to wx and, two distal to wx). Of the 26 possible homozygous translocation heteroallelic combinations, the results of eight are available in this report. In most instances, the frequencies of wx intragenic recombination of the rearranged chromosomes were lower than that of the control. A significant difference in degree of reduction in recombination values is found for different heteroallelic combinations at the same location and in one instance for the same heteroallelic combination at a different chromosome position. The linear order of the 4 wx mutants within the wx cistron is wx ^C-wx ^H21-wx ⁹⁰ (wx ^B). Additional effects from both genetic background and seasonal factors of the different plantings also are observed.Journal Paper No. J-6906 of the Iowa Agriculture and Home Economics Experiment Station, Ames, Iowa. Project No. 1335.     

Linkages among zein genes determined by isoelectric focusing

Summary Genetic control of the major zein polypeptides in maize (Zea mays L.) was studied by isoelectric focusing (IEF) in agarose. Linkage relationships were determined by making a number of crosses, then determining the expression of zein polypeptides in backcross seeds. Chromosome linkages were determined by using the markers sugary-1 (for chromosome 4), yellow-8, and a waxy 7–9 translocation (for chromosome 7). Nine zeins were in one linkage group on chromosome 4, six in another linkage group on chromosome 4, and four zeins were in one linkage group on chromosome 7. Some IEF single bands consisted of at least two polypeptides, which were detected by subsequent sodium dodecyl sulfate polyacrylamide gel electrophoresis, by aberrant ratios in backcrosses, or by differing recombination percentages. One zein occurred only in homozygous sugary-1 seeds. Three sets of closely-linked zeins were noted that occurred together almost exclusively in certain inbreds.Cooperative investigations of the U.S. Department of Agriculture, Agricultural Research Service, and the Illinois Agricultural Experiment Station, Department of Agronomy, University of Illinois, Urbana, USAMention of firm names or trade products does not imply that they are endorsed or recommended by the U.S. Department of Agriculture over other firms or similar products not mentioned     

The effect of Ac dosage on the production of multiple forms of Wx protein by the wxm-9 controlling element mutation in maize

Summary The wx ^m-9 autonomous controlling element mutation produces either a single or doublet type protein in 20 day endosperm, depending on the dosage of Ac. The single protein observed in one dose Ac endosperm is the product of wx ^m-9 to Wx revertants. The doublet observed in two and three dose Ac endosperm is the product of the Ac-containing, partially suppressed wx ^m-9 gene. Mutual exclusion of the activities of the wx ^m-9 gene and its included Ac element is postulated. A competition model is presented to account for the unexpected Ac dosage effect.     

Chromosome labeling with transposable elements in maize

Transposable elements randomly insert into a targeted locus at a frequency of 10^-6 to 10^-5. The En element has been shown in previous studies to transpose more frequently into closely linked sites. Thus, it is appropriate to place an En element onto each of the 20 chromosome arms in maize to maximize tagging efficiency. This is called chromosome labeling for tagging purposes with transposons. After a chromosome arm has been labeled with a transposon, genes residing in that arm will have a greater chance to be tagged by the transposon. To date, all of the maize chromosome arms have been labeled with at least one of five Encontaining alleles. The elements were linked to the arms using reciprocal translocations. The usage of these arm-labeled lines is discussed in the context of gene tagging.Journal Paper No. 15224 of the Iowa Agriculture and Home Economics Experiment Station, Ames, Iowa; Project No. 3176     

Genetic sexing of Anopheles stephensi with the larval morphological mutant Bl

The development of two genetic sexing systems for Anopheles stephensi based on the visible mutant black larvae (Bl) are reported. Two Y-linked translocations, T(Y-3)20 and T(Y-3)24, induced by 5 Krads X-ray irradiation were found to have breakpoints almost completely linked to Bl, showing recombination frequencies of less than 0.05% and 0.9% respectively. These strains can be maintained as stable inbreeding populations in which males are easily selected at the late 3rd or 4th larval instar by their half-black appearance, which is distinct from the full black phenotype of the females.A third Y-linked translocation, T(Y-3)9, in which the breakpoint showed only 0.7% recombination with an adult morphological mutant, short palpi (sp) was also isolated. Linkage between the breakpoint of 5 Y-linked translocations and the DDT resistance gene locus (DDT) was established providing incentive for further studies. Only two translocations showing poor linkage between the breakpoint and the dieldrin resistance gene locus (Dl) were identified. Linkage data and cytology indicated that each of the Y-chromosone 3 translocations studied involved the 3R arm, and not 3L where Dl is located.     

Translocations used to generate chromosome segment duplications in <Emphasis Type="Italic">Neurospora</Emphasis> can disrupt genes and create novel open reading frames

In Neurospora crassa, crosses between normal sequence strains and strains bearing some translocations can yield progeny bearing a duplication (Dp) of the translocated chromosome segment. Here, 30 breakpoint junction sequences of 12 Dp-generating translocations were determined. The breakpoints disrupted 13 genes (including predicted genes), and created 10 novel open reading frames. Insertion of sequences from LG III into LG I as translocation T(UK8-18) disrupts the eat-3 gene, which is the ortholog of the Podospora anserine gene ami1. Since ami1-homozygous Podospora crosses were reported to increase the frequency of repeat-induced point mutation (RIP), we performed crosses homozygous for a deficiency in eat-3 to test for a corresponding increase in RIP frequency. However, our results suggested that, unlike in Podospora, the eat-3 gene might be essential for ascus development in Neurospora. Duplication-heterozygous crosses are generally barren in Neurospora; however, by using molecular probes developed in this study, we could identify Dp segregants from two different translocation-heterozygous crosses, and using these we found that the barren phenotype of at least some duplication-heterozygous crosses was incompletely penetrant.     

The Spm (En) transposable element controls the excision of a 2-kb DNA insert at the wx allele of Zea mays

The waxy (Wx) locus of Zea mays was cloned from strains carrying the wild-type and wx^m-8 mutant alleles. The receptor component of the Suppressor-Mutator (Spm) controlling element system in the wx^m-8 allele was shown to be a 2 kb long insertion within the transcribed region of the Wx gene. The insertion, termed Spm-I8, is excised during somatic reversion events induced by the autonomous controlling element Enhancer (En), which is an equivalent to Spm. Integration of Spm-I8 into the Wx gene generates a 3-bp target site duplication. Spm-I8 has a 13 bp long inverted repeat at its termini. The ends of the element can be further folded to build a large double-stranded structure consisting of five perfectly matching double-stranded regions of 9–13 bp in length, interrupted by single-stranded loops. A comparison of the wild-type and wx^m-8 alleles revealed two additional insertions 6 (insert-1) and 0.25 (insert-2) kb in length. No En-induced excision of insert-1 and insert-2 could be detected so far. There is remarkable structure and sequence homology between Spm-I8 and the transposable elements Tam1 and Tam2 of Antirrhinum majus at their termini, reflecting a possible evolutionary and/or functional relationship between transposons in different plant species.     

CYTOGENETIC STUDIES IN CLARKIA,SECTION PRIMIGENIA. II. A CYTOLOGICAL SURVEY OF CLARKIA ARCUATA AND CLARKIA LASSENENSIS

Clarkia arcuata and C. lassenensis are the 2 members of the subsection Flexicaules. Although closely related morphologically, they show very different patterns of chromosomal variability in nature. About 25% of the plants grown from wild seed of C. arcuata, a predominantly cross-pollinating species, were heterozygous for 1 or 2 translocations; such heterozygotes were found in 5 of the 9 populations sampled. An analysis of the chromosome pairing in intraspecific crosses indicated that at least 5 different translocations giving a ring of 4 with the “standard” strain, 2 giving a ring of 6, and 2 giving a ring of 8 are present in nature. No arrangement was found with widespread distribution, and it is impossible to say at present what might be the primitive arrangement of this species. One population was found to contain an inversion, a rearrangement which is very rare in Clarkia at the intraspecific level. In C. lassenensis, a predominantly self-pollinating species, only 6% (3 plants) of a sample of 53 were translocation heterozygotes, and these heterozygotes were found in only 2 of 13 populations. Intraspecific crosses indicated that one chromosome arrangement, the “standard,” was present throughout the species range.     

A Drosophila model of improving the fitness of translocations for genetic control

Summary Translocations with euchromatic breakpoints were generated in lethal-free autosomes of Drosophila melanogaster. Pairs of initially homozygous-lethal translocations, matched for one breakpoint, were allowed to recombine for ten generations. At the end of the experiment, 10/47=21% of crosses (representing 8/26=31% of the intial translocations) had at least one line with at least one homokaryotypic third-instar larva, detected among a small sample of salivary gland preparations from each cross. Among these ten crosses, chromosome extractions were performed; 5/10 of the crosses (probably representing 4/8 of the translocations) had at least one chromosome set with relative viability greater than 15%–25%. To a first (and conservative) approximation, 5/47=11% of crosses showed improvement of viability of 1 of the translocations in the cross during the controlled recombination regime; overall, 4 of the 26 translocations (15%) showed improvement of viability. Partly because of the conservative criterion of viability used, this figure is less than the 20% of translocations that theoretically should be improvable. Pseudohomokaryotypes (pairs of translocations with both breakpoints nearly matching) did not behave as very fit homokaryotypes. However, some of them generated viable hyperploid assortment products that might be of practical interest to mask deleterious effects at breakpoints of translocations. The improvement of fitness of at least a proportion of low fitness translocation stocks by the use of a controlled recombination procedure should be feasible for many pest species.     

Two distinct <Emphasis Type="Italic">waxy</Emphasis> alleles impact the granule-bound starch synthase in sorghum

The granule-bound starch synthase (GBSS) is the enzyme responsible for amylose synthesis in starch granules. Loss of GBSS activity results in starch granules containing mostly amylopectin and little or no amylose, a phenotype described as waxy. Previously, two phenotypic classes of waxy alleles were identified in sorghum (Sorghum bicolor L. Moench) characterized by the absence (waxy ^a ; wx ^a ) or presence (waxy ^b ; wx ^b ) of the GBSS protein in the endosperm. To characterize these alleles, we examined endosperm architecture using scanning electron microscopy (SEM), assayed GBSS enzymatic activities, and identified DNA lesions associated with the mutations in the GBSS (Sb10g002140) gene. wx ^a , the allele present in B Tx630 and R Tx2907, contained a large insertion in the third exon, which was consistent with the absence of the GBSS protein previously observed. wx ^b , the allele present in B 9307 and B TxARG1, contained a missense mutation that resulted in conversion of glutamine 268 to histidine in a conserved domain in starch synthases. In wx ^b , GBSS activity was less than 25% that of the non-waxy line B Wheatland, and GBSS activity was not detected in wx ^a . SEM showed that endosperm architecture was very similar in both wx ^a and wx ^b alleles, but altered in comparison to non-waxy lines R Tx430 and B Wheatland. Both alleles may have a range of potential applications in grain sorghum because of low amylose content in their starch and the presence or absence of the GBSS protein. PCR based markers were developed for both the wx ^a and the wx ^b alleles to aid in molecular breeding of low amylose sorghum.     

Wheat genome structure: translocations during the course of polyploidization

The genomic organization of Triticum timopheevii (2n=28, A^tA^tGG) was compared with hexaploid wheat T. aestivum (2n=42, AABBDD) by comparative mapping using microsatellites derived from bread wheat. Genetic maps for the two crosses T. timopheevii var. timopheevii × T. timopheevii var. typica and T. timopheevii K-38555×T. militinae were constructed. On the first population, 121 loci were mapped, and on the second population 103 loci. The transferability of the wheat markers to T. timopheevii was generally better for the A genome-specific markers (76–78% produced amplification products; 26 and 29% were polymorphic) than for B genome-specific markers (54% produced amplification products; 14 and 16% were polymorphic). Of the D genome-specific markers, one third produced amplification products in T. timopheevii, but only 5 and 2% were polymorphic in the corresponding mapping populations. The maps constructed confirmed the previously described translocation between chromosome arms 6A^tS and 1GS and revealed at least two yet unknown rearrangements on chromosomes 4A^t and 6A^t. The presence of other translocations and rearrangements between T. timopheevii and T. aestivum was demonstrated by a variety of markers mapping to nonhomoeologous positions.     

Meiotic confirmation of the identification of chromosomes 9 and 13 in T(9; 19)163H,T(5; 13)264 Ca,and T(1; 13)70H stocks in Mus musculus

Quinacrine fluorescent banding patterns of chromosomes 9 and 13 are very similar in mitotic preparations of Mus musculus. Meiotic studies were carried out in male and female mice heterozygous for two translocations involving these chromosomes to determine whether the translocations have a common chromosome. The results indicate that chromosome 9 is involved in the T163H translocation but not in either the T70H or T264Ca translocations. The T70H and T264Ca translocations, but not the T163H, have chromosome 13 in common. These results support the interpretations based on mitotic studies.     

Intraspecific karyotype divergence inTriticum araraticum (Poaceae)

Karyotypes of 185 accessions ofTriticum araraticum Jakubz. (2n = 28 = 4x = A^tA^tGG) from Iraq, Iran, Turkey, and Transcaucasia were analyzed using C-banding technique. All accessions showed a certain degree of C-banding polymorphism and further karyotypic diversity was generated by structural rearrangements, mainly translocations. Eighty-one accessions had the normal karyotype similar to that ofT. timopheevii (cultivation), i.e., they showed C-banding polymorphism but no chromosomal rearrangements based on the resolving power of the C-banding technique. One-hundred four accessions showed 34 karyotypic variants, 31 had reciprocal translocations with the breakpoints in the centromeric regions of chromosomes. Three showed reciprocal translocations with the breakpoints in intercalary regions of chromosomes. A paracentric inversion for 7A^t chromosome was observed in some accessions. The rearranged karyotypes differed from the normal by one translocation in 21 variants, by two in 9 variants, by three in 1 variant, and by four in 2 variants of karyotypes. Translocations occurred more frequenty in the chromosomes of G-genome than of A^t-genome. Individual chromosomes differed in the frequencies of their involvement in translocations. Each geographical region contained a unique spectrum of translocations. Karyotypic diversity was the highest in Iraq followed by Transcaucasia and Turkey. Iran showed little karyotypic variation. Based on karyotypic analysis, Iraq should be considered as a centre of origin and primary centre of diversity ofT. araraticum.     

Inheritance and chromosomal locations of male fertility restoring gene transferred from Aegilops umbellulata Zhuk. to Triticum aestivum L.

Restriction fragment length polymorphism (RFLP) markers were used to map male fertility restoring gene that was transferred from chromosome 6U of Aegilops umbellulata Zhuk. to wheat. Segments of chromosome 6U bearing the gene that restore fertility to T. timopheevi Zhuk. male sterile cytoplasm were identified in all four translocation lines by two probes, BCD21 and BCD342. Lines 040-5,061-1 and 061-4 are T6BL.6BS6U translocations, while line 2114 is a T6AL.6AS-6U translocation. Line 2114 has a much larger 6U chromosomal segment and lower frequency of transmission of male gametes with the alien segment than the other three lines. The restoring gene carried by the 6U segment in 2114 showed high expressivity and complete penetrance. This restoring gene is designated Rf6. A homoeologous chromosome recombination mechanism is discussed for the alien gene transfer.Paper No. 823 of the Cornell plant breeding series     

Duplicated chromosome segments in maize (Zea mays L.): further evidence from hexokinase isozymes

Summary The genetic control of hexokinase isozymes (ATP: d-hexose-6-phosphotransferase, E.C. 2.7.7.1, HEX) in maize (Zea mays L.) was studied by starch gel electrophoresis. Genetic analysis of a large number of inbred lines and crosses indicates that the major isozymes observed are encoded by two nuclear loci, designated Hex1 and Hex2. Five active allozymes and one null variant are associated with Hex1, while Hex2 has nine active alleles in addition to a null variant. Alleles at both loci govern the presence of single bands, with no intragenic or intergenic heteromers visible, suggesting that maize HEX's are active as monomers. Organelle preparations demonstrate that the products of both loci are cytosolic. All alleles, including the nulls, segregate normally in crosses. Vigorous and fertile plants were synthesized that were homozygous for null alleles at both loci, suggesting that other hexosephosphorylating enzymes exist in maize that are undetected with our assay conditions. Linkage analyses and crosses with B-A translocation stocks place Hex1 on the short arm of chromosome 3, 27 centimorgans from Pgd2 (phosphogluconate dehydrogenase) and Hex2 on the long arm of chromosome 6, approximately 45 centimorgans from Pgd1. It is suggested that the parallel linkages among these two pairs of duplicated genes reflects an evolutionary history involving chromosome segment duplication or polyploidy.Paper No. 10170 of the Journal Series of the North Carolina Agricultural Research Service, Raleigh, NC     

Regulatory potential of nonautonomous mariner elements and subfamily crosstalk

Two naturally occurring nonautonomous mariner elements were tested in vivo for their ability to down-regulate excision of a target element in the presence of functional mariner transposase. The tested elements were the peach element isolated from Drosophila mauritiana which encodes a transposase that differs from the autonomous element Mos1 in four amino acid replacements, and the DTBZ1 element isolated from D. teissieri which encodes a truncated protein consisting of the first 132 residues at the amino end of the normally 345-residue transposase. We provide evidence that the protein from the peach element does interact to down-regulate wildtype transposase, indicating that at least some nonautonomous elements in natural populations that retain their open reading frame may play a regulatory role. In contrast, our tests reveal at most a weak interaction between transposase from the autonomous Mos1 element and the truncated protein from DTBZ1 and none between Mos1 transposase and that from the distantly related mariner-like element Himar1 identified in the horn fly Haematobia irritans. Hence, the extent of regulatory crosstalk between mariner-like elements may be limited to closely related ones. The evolutionary implications of these results are discussed. This revised version was published online in July 2006 with corrections to the Cover Date.     

Variegation patterns caused by excision of the maize transposable element Dissociation (Ds) are autonomously regulated by allele-specific Activator (Ac) elements and are not due to trans-acting modifier genes

The Ac elements present in the unstable wxm7 and wx-m9 alleles of maize trigger different patterns of Ds excision in trans. To determine whether this differential regulation is a feature of the Ac alleles themselves or is mediated by genetically distinct factors, maize plants heterozygous for the wx-m7 and wx-m9 alleles were crossed to tester strains homozygous for Ds reporter alleles. Kernels showing the variegation pattern characteristic for the Ac elements carried in the wx-m7 and wx-m9 alleles were found to be present in the ratios expected from the genetic constitution of the strains. The aleurone variegation caused by excision of the Ds reporter element and the endosperm variegation caused by excision of Ac from the wx-m7 and wx-m9 alleles themselves segregated with the original wx-m alleles. In addition, stable Wx and wx derivatives of wx-m9 that have lost Ac no longer exert any trans effect on the wx-m7 allele (and vice versa). Therefore it is concluded that the observed variegation patterns are autonomously determined by specific trans effects of the particular Ac element.