Simultaneous Growth on Citrate Reduces the Effects of Iron Limitation during Toluene Degradation in Pseudomonas

Rhizoremediation has been suggested as an attractive bioremediation strategy for the effective breakdown of pollutants in soil. The presence of plant root exudates such as organic acids, sugars, and amino acids that may serve as carbon sources or biosynthetic building blocks and the limited bioavailability of iron may influence the degradation of pollutants in the rhizosphere. To test the effect of such compounds on hydrocarbon degradation, trace concentrations of yeast extract or mixtures of organic acids and amino acids were added to continuous cultures of Pseudomonas putida mt2 and P. putida WCS358 (TOL) growing on toluene. By addition of these compounds increased growth yields and higher specific growth rates on toluene were obtained. The effects of iron limitation on the substrate utilization pattern of both strains were tested by growing the strains on a mixture of toluene and the readily degradable carbon source citrate while the iron concentration was varied. Simultaneous use of both substrates under carbon-limited as well as iron-limited conditions was observed. Growth yields were less reduced and iron requirement was lower during iron-limited growth in the toluene + citrate grown cultures compared to cultures in which toluene was used as the sole carbon source. The kinetic properties of the cells for toluene degradation were less hampered by the lack of iron when citrate was used as an additional carbon source. The results indicate that the availability of low concentrations of natural organic compounds, such as produced in the rhizosphere, may positively influence the degradative performance of hydrocarbon-degrading bacteria.     

不同品种小麦与蚕豆间作对蚕豆枯萎病的防治及其机理

通过田间小区试验和水培试验,研究了3个品种小麦（云麦42、云麦47和绵阳29）与蚕豆间作对蚕豆地上部生物量、枯萎病发生、根际微生物代谢功能多样性和枯萎病病原菌尖孢镰刀菌数量的影响,分析了3个不同小麦品种低分子量根系分泌物组分（糖、氨基酸和有机酸）的差异.结果表明： 云麦42与蚕豆间作（YM42/B）和云麦47与蚕豆间作（YM47/B）使蚕豆地上部生物量分别增加16.6%和13.4%,使蚕豆枯萎病病情指数分别降低47.6%和23.3%,绵阳29与蚕豆间作（MY29/B）对蚕豆地上部生物量和枯萎病病情指数均无显著影响.与单作蚕豆相比,YM42/B和YM47/B处理均显著提高了蚕豆根际微生物的平均颜色变化率（AWCD)及对碳源的总利用强度和Biolog ECO板中各种碳源的利用,明显改变了蚕豆根际微生物群落结构,并显著降低了蚕豆根际的尖孢镰刀菌数量;MY29/B处理对AWCD值、碳源总利用强度和Biolog ECO板中各种碳源的利用及蚕豆根际尖孢镰刀菌数量均无显著影响,也未明显改变蚕豆根际的微生物群落结构.3个小麦品种根系分泌物中可溶性糖、游离氨基酸总量和有机酸总量均表现为MY29＞YM47＞YM42.MY29根系分泌物中丝氨酸、谷氨酸、甘氨酸、缬氨酸、蛋氨酸、苯丙氨酸、赖氨酸的含量均显著高于YM42和YM47;精氨酸为YM42、YM47所特有,而亮氨酸为MY29所特有.MY29和YM47根系分泌物中检出酒石酸、苹果酸、柠檬酸、琥珀酸、延胡索酸和顺乌头酸6种有机酸,而YM42根系分泌物中检出洒石酸、苹果酸、柠檬酸和延胡索酸4种有机酸,且MY29和YM47根系分泌物中苹果酸含量显著高于YM42.小麦与蚕豆间作提高了蚕豆根际微生物的活性和碳源利用强度,改变了根际微生物的群落结构,降低了蚕豆根际尖孢镰刀菌的数量,促进了蚕豆生长,抑制了蚕豆枯萎病的发生,但小麦与蚕豆间作控病效果受小麦品种的影响,表明间作系统中非寄主作物根系分泌物的差异是影响间作对土传病害控制的重要因素.     

Root exudates of plants

Summary The composition of the root exudates of barley and wheat in the initial growth phases was investigated; amino acids, organic acids, sugars and certain aromatic compounds could be identified. A knowledge of the composition of root exudates is important from the standpoint of the interaction between the plants and the micro-organisms in the rhizosphere. Some aspects of the rhizosphere effect connected with the present work are discussed.     

Effects of selected root exudate components on soil bacterial communities

Low-molecular-weight organic compounds in root exudates play a key role in plant-microorganism interactions by influencing the structure and function of soil microbial communities. Model exudate solutions, based on organic acids (OAs) (quinic, lactic, maleic acids) and sugars (glucose, sucrose, fructose), previously identified in the rhizosphere of Pinus radiata, were applied to soil microcosms. Root exudate compound solutions stimulated soil dehydrogenase activity and the addition of OAs increased soil pH. The structure of active bacterial communities, based on reverse-transcribed 16S rRNA gene PCR, was assessed by denaturing gradient gel electrophoresis and PhyloChip microarrays. Bacterial taxon richness was greater in all treatments than that in control soil, with a wide range of taxa (88-1043) responding positively to exudate solutions and fewer (<24) responding negatively. OAs caused significantly greater increases than sugars in the detectable richness of the soil bacterial community and larger shifts of dominant taxa. The greater response of bacteria to OAs may be due to the higher amounts of added carbon, solubilization of soil organic matter or shifts in soil pH. Our results indicate that OAs play a significant role in shaping soil bacterial communities and this may therefore have a significant impact on plant growth.     

根分泌作用与植物对金属毒害的抗性

在金属污染进入体内之前将其有效性和毒性降低是植物的主要抗金属机制之一,根系是金属等土壤污染物进入植物的门户,它能分泌有机酸、氨基酸,糖、生长物质等根分泌物与根际环境,根分泌物在植物吸收金属的过程中影响很大,它们可以通过改变根球环境的ＰＨ、Ｅｈ等物理、化学性质而影响根系对金属的吸收;通过螯合、络合,沉淀等作用将金属污染物滞留于根外;通过改变根际微生的组织,活性和分泌作用而改变根际环境中金属的数量和活     

Studies on the rhizosphere mycoflora of broad bean and cotton

Summary Seed and root exudates from three varieties of both broad bean and cotton grown aseptically were analyzed for amino acids and sugars. Broad bean varieties were found to excrete considerable amounts of amino compounds with 15 different amino acids, while cotton varieties excreted less consisting of 12 amino acids. Five sugars were identified in the seed and root exudates from broad bean varieties, while three were present in the seed and root exudates from cotton varieties. Seed and root exudates stimulated spore germination and growth of fungi isolated from the rhizosphere.     

Effects of a vesicular-arbuscular mycorrhizal fungus and other soil microorganisms on growth,mineral nutrient acquisition and root exudation of soil-grown maize plants

Maize (Zea mays L. cv. Alize) plants were grown in a calcareous soil in pots divided by 30-m nylon nets into three compartments, the central one for root growth and the outer ones for hyphal growth. Sterle soil was inoculated with either (1) rhizosphere microorganisms other than vesicular-arbuscular mycorrhizal (VAM) fungi, (2) rhizosphere microorganisms together with a VAM fungus [Glomus mosseae (Nicol. and Gerd.) Gerdemann and Trappel], or (3) with a gamma-irradiated inoculum as control. Plants were grown under controlled-climate conditions and harvested after 3 or 6 weeks. VAM plants had higher shootroot ratios than non-VAM plants. After 6 weeks, the concentrations of P, Zn and Cu in roots and shoots had significantly increased with VAM colonization, whereas Mn concentrations had significantly decreased. Root exudates were collected on agar sheets placed on the interface between root and hyphal compartments. Six-week-old VAM and non-VAM plants had similar root exudate compositions of 72–73% reducing sugars, 17–18% phenolics, 7% organic acids and 3% amino acids. In another experiment in which root exudates were collected on agar sheets with or without antibiotics, the amounts of amino acids and carbohydrates recovered were similar in VAM and non-VAM plants. However, threeto sixfold higher amounts of carbohydrates, amino acids and phenolics were recovered when antibiotics were added to the agar sheets. Thus, the high microbial activity in the rhizosphere and on the rhizoplane limits the exudates recovered from roots.     

Evaluation of a novel tool for sampling root exudates from soil-grown plants compared to conventional techniques

The release of low molecular weight (LMW) organic compounds (e.g. organic acids, amino acids, sugars, etc.) by living plant roots significantly contributes to the development of chemical, physical as well as microbial rhizosphere gradients. Suitable and accurate sampling procedures are crucial for enhancing our understanding of the dynamics of related rhizosphere processes. Here we compare common sampling techniques with a novel tool for root exudate collection that allows non-destructive and repetitive sampling from soil-grown roots. Root exudates from Zea mays L. were collected using the following techniques: (i) hydroponic growth and sampling, (ii) soil growth and hydroponic sampling and (iii) rhizoboxes fitted with a novel in situ root exudate collecting tool. Furthermore, rhizosphere soil solution for the analysis of exudates and microbial metabolites was sampled using micro-suction cups (iv). The effect of different sampling solutions (deionised water and 0.5 mM CaCl₂) on organic acid and amino acid exudation patterns was also investigated. The novel exudate collecting tool was successfully tested for root exudate sampling. Results showed that particularly amino acid exudation rates were significantly affected by growth conditions and sampling procedures, while organic acid exudation patterns varied less across the different sampling setups. Despite qualitative and quantitative differences, exudation rates were in the same order of magnitude across the different sampling procedures. Soil solution concentrations obtained from micro-suction-cup sampling at defined distance to the root surface showed no distinct gradient, highlighting the importance of soil microorganisms in regulating the soil solution concentration of LMW C compounds either via microbial degradation or the release of microbial metabolites. The exudate collector offers new opportunities to assess root exudation rates and composition from soil-grown plants and thus enhances our knowledge of fundamental rhizosphere processes.     

Role of proteinaceous amino acids released in root exudates in nutrient acquisition from the rhizosphere

The role of proteinaceous amino acids in rhizosphere nutrient mobilization was assessed both experimentally and theoretically. The degree of adsorption onto the soil's solid phase was dependent on both the amino acid species and on soil properties. On addition of amino acids to both soil and freshly precipitated Fe(OH)₃, no detectable mobilization of nutrients (K, Na, Ca, Mg, Cu, Mn, Zn, Fe, S, P, Si and Al) was observed, indicating a very low complexation ability of the acidic, neutral and basic amino acids. This was supported by results from a solution equilibria computer model which also predicted low levels of amino acid complexation with solutes present in the soil solution. On comparison with the Fe(OH)₃ and equilibria data obtained for the organic acid, citrate, it was concluded that amino acids released into the rhizosphere have a limited role in the direct acquisition of nutrients by plants. The effectiveness of root exudates such as amino acids, phytosiderophores and organic acids in nutrient mobilization from the rhizosphere is discussed with reference to rhizosphere diffusion distances, microbial degradation, rate of complexation and the root's capacity to recapture exudate-metal complexes from the soil.     

Chemotaxis of deleterious rhizobacteria to velvetleaf (Abutilon theophrasti Medik.) seeds and seedlings

Abstract Intact seeds and seed and seedling root exudates of velvetleaf ( Abutilon theophrasti Medik.) were used as chemoattractants in experiments to determine the relative importance of chemotaxis in spermosphere and rhizosphere colonization by selected rhizobacteria. Results for soft-agar, capillary tube and soil chemotaxis assays indicated that selected deleterious rhizobacteria were specifically attracted to seed and seedling root exudates. Several amino acids and sugars detected in exudates were chemoattractants for these rhizobacteria. Using soil-chemotaxis assemblies, migration of rhizobacterial isolates through 2-cm distances of soil toward velvetleaf seeds or exudates was detected within 24 h. Isolates were not detected at the same site in soils without seeds or exudates until 72 h after inoculation. These results suggest that attraction of delecterious rhizobacteria toward seeds and seedling roots mediated by exudates (chemotaxis) might be the first step in establishment and subsequent colonization of biological control bacteria on weed seeds and seedling roots in soil.     

Mobilization of cadmium and other metals from two soils by root exudates of Zea mays L., Nicotiana tabacum L. and Nicotiana rustica L.

Soluble root exudates were collected from three plants (Nicotiana tabacum L., Nicotiana rustica L. and Zea mays L.), grown under axenic and hydroponic conditions, in order to study their metal-solubilizing ability for Cd and other cations (Cu, Fe, Mn, Ni, Zn). Nicotiana spp. and Zea mays L. root exudates differed markedly in C/N ratio, sugars vs. amino acids ratio and organic acids content. Metals from two soils were extracted with either root exudate solutions, containing equal amounts of organic carbon, or distilled water as control. In the presence or absence of root exudates, the solubility of Fe and Mn was much higher than of the four other metals tested. Root exudates increased the solubilities of Mn and Cu, whereas those of Ni and Zn were not affected. Root exudates of Nicotiana spp. enhanced the solubility of Cd. The extent of Cd extraction by root exudates (N. tabacum L. N. rustica L. Zea mays L.) was similar to the order of Cd bioavailability to these three plants when grown on soil. An increase in Cd solubility in the rhizosphere of apical root zones due to root exudates is likely to be an important cause of the relatively high Cd accumulation in Nicotiana spp.     

Root exudate components change litter decomposition in a simulated rhizosphere depending on temperature

The release of root exudates into the rhizosphere is known to enhance soil biological activity and alter microbial community structure. To assess whether root exudates also stimulated litter decomposition, in a rhizosphere model system we continuously injected solutions of glucose, malate or glutamate through porous Rhizon^® soil solution samplers into the soil at rhizosphere concentrations. The effect of these substances on the decomposition of ¹⁴C-labelled Lolium perenne shoot residues present in the soil was evaluated by monitoring ¹⁴CO₂ evolution at either 15°C or 25°C. The incorporation of the ¹⁴C into the microbial biomass and appearance in the dissolved organic matter (DOM) pool was estimated after 32 d incubation. The presence of malate and glutamate increased the mineralization of L. perenne residues by approximately 20% relative to the soil without their addition at 15°C, however, no significant effects on residue decomposition were observed at 25°C. The incorporation of the ¹⁴C-label into the microbial biomass and DOM pool was not affected by the addition of either glucose, malate or glutamate. Although nearly the same amount of L. perenne residues were mineralized at either temperature after 32 d, less ¹⁴C was recovered in the microbial biomass and DOM pools at 25°C compared to 15°C. Alongside other results, this suggests that the rate of microbial turnover is greater at 25°C compared to 15°C. We conclude that the addition of labile root exudate components to the rhizosphere induced a small but significant increase on litter decomposition but that the magnitude of this effect was regulated by temperature.     

苯并[α]芘对不同修复潜力羊茅属植物的根系分泌物中几种低分子量有机物的影响

根系分泌物是植物与土壤间进行物质交换和信息传递的重要载体, 是植物响应外界胁迫的重要途径, 也是构成根际微生态特征的关键因素。根系分泌物与有机污染物的植物修复密切相关, 研究胁迫条件下不同修复潜力植物间根系分泌物的释放特征有助于揭示植物修复的内在机制。该文借助根际袋土培试验研究了苯并[α]芘(BaP)胁迫下5种羊茅属(Festuca)植物根系不同生长期(30-70天)几种低分子量有机物的分泌特征。结果表明: 1) BaP浓度在10.25-161.74 mg·kg^-1范围内时, 待试植物能有效地促进土壤中BaP的去除, 其修复潜力依次为苇状羊茅(F. arundinacea) > 草原羊茅(F. chelungkiangnica) ≥ 毛稃羊茅(F. rubra subsp. arctica) ≥ 贫芒羊茅(F. sinomutica) > 细芒羊茅(F. stapfii)。2) BaP胁迫增强了植物根系对可溶性糖的分泌: 随着胁迫强度的增大、胁迫期的延长, 其分泌量变化呈“先升后降”趋势。3) BaP胁迫促进了植物根系低分子量有机酸的释放, 植物的修复潜力越大, 有机酸高峰值出现时的胁迫浓度越高; 组成成分较稳定, 草酸、乙酸、乳酸和苹果酸为主要组分(>97.34%), 在修复潜力较强植物的根系分泌物中检测出微量的反丁烯二酸。4) BaP胁迫对氨基酸种类影响不大, 但对分泌量影响较大。其中, 苏氨酸、丝氨酸、甘氨酸、丙氨酸的分泌量随BaP胁迫强度的增强而剧增; 脯氨酸、羟脯氨酸和天冬氨酸近乎以加和效应甚至协同效应的形式参与植物对BaP胁迫的应激反应: 参与应激组分的分泌量随胁迫强度的增强而剧增, 植物的修复潜力越强, 参与的组分越多。可见BaP胁迫下, 5种羊茅属植物根系分泌物中几种低分子量有机物的释放特征与植物自身的修复潜力有关: 修复潜力越强, 释放量越多且成分也越复杂, 并呈现出较强的环境适应性及生理可塑性。     

Root exudate cocktails: the link between plant diversity and soil microorganisms?

Higher plant diversity is often associated with higher soil microbial biomass and diversity, which is assumed to be partly due to elevated root exudate diversity. However, there is little experimental evidence that diversity of root exudates shapes soil microbial communities. We tested whether higher root exudate diversity enhances soil microbial biomass and diversity in a plant diversity gradient, thereby negating significant plant diversity effects on soil microbial properties. We set up plant monocultures and two‐ and three‐species mixtures in microcosms using functionally dissimilar plants and soil of a grassland biodiversity experiment in Germany. Artificial exudate cocktails were added by combining the most common sugars, organic acids, and amino acids found in root exudates. We applied four different exudate cocktails: two exudate diversity levels (low‐ and high‐diversity) and two nutrient‐enriched levels (carbon‐ and nitrogen‐enriched), and a control with water only. Soil microorganisms were more carbon‐ than nitrogen‐limited. Cultivation‐independent fingerprinting analysis revealed significantly different soil microbial communities among exudate diversity treatments. Most notably and according to our hypothesis, adding diverse exudate cocktails negated the significant plant diversity effect on soil microbial properties. Our findings provide the first experimental evidence that root exudate diversity is a crucial link between plant diversity and soil microorganisms.     

Decomposition of glucose continuously added to soil

The continuous flow method was used to study the decomposition of uniformly tagged glucose in soil with different inorganic nitrogen and phosphorus levels. It was found that the amount of glucose carbon mineralized to carbon dioxide was higher if nitrogen and phosphorus were added together with the glucose. Some of the labelled carbon escaped from the soil and the amount of leached-out carbon was in inverse proportion to the amount of nitrogen and phosphorus in the soil. The level of mineral nutrient elements stimulated the rate of glucose mineralization in the initial phase of the continuous process. The rate of glucose mineralization in the steady state was stimulated in soil continuously enriched with glucose together with nitrogen and phosphorus. The quantitative relationship between the assimilation and oxidation of glucose carbon depended on the nitrogen and phosphorus concentration and was in inverse proportion to the mineral element level. The continuous addition of glucose stimulated decomposition of the native soil organic matter. The resultant priming effect was balanced, however, by the retention of glucose carbon in the soil, with the result that the carbon balance remained positive. The rate of glucose oxidation, the amount of carbon retained in the soil and the priming effect of glucose were strongly influenced by the flow rate.     

Organic acids, sugars, and L-tryptophane in exudates of vegetables growing on stonewool and their effects on activities of rhizosphere bacteria

The influence of stonewool substrate on the exudation of the major soluble carbon nutrients and of the auxin precursor tryptophane for Pseudomonas biocontrol agents was studied. To this end, the composition of the organic acids and sugars, as well that of tryptophane, of axenically collected exudates of seed, seedlings, and roots of tomato, cucumber, and sweet pepper was determined. The major results were as follows. i) The total amount of organic acid is much higher than that of total sugar. ii) Exudation of both organic acids and sugars increases during plant growth. iii) Citric, succinic, and malic acids represent the major organic acids, whereas fructose and glucose are the major sugars. iv) Compared with glass beads as a neutral substrate, stonewool substantially stimulates exudation of organic acids and sugars. v) It appeared that enhanced root-tip-colonizing bacteria isolated previously from the rhizosphere of tomato and cucumber grow much better in minimal medium with citrate as the sole carbon source than other, randomly selected rhizobacteria do. This indicates that the procedure which selects for excellent root-tip colonizers enriches for strains which utilize the major exudate carbon source citrate. vi) The content of L-tryptophane, the direct precursor of auxin, is approximately 60-fold higher in seedling exudates of tomato and sweet pepper than in cucumber seedling exudates, indicating a higher possibility of plant growth stimulation after inoculation with auxin-producing rhizobacteria for tomato and sweet pepper crops than for cucumber. However, the biocontrol strain Pseudomonas fluorescens WCS365, which is able to convert tryptophane into auxin, did not stimulate growth of these three crops. In contrast, this strain did stimulate growth of roots of radish, a plant which exudes nine times more tryptophane than tomato does.     

温室CO2施肥对黄瓜幼苗根系生长及分泌物和伤流液组成的影响

为探讨温室蔬菜CO2施肥的根际效应,以黄瓜幼苗为试材,研究了CO2施肥(上午施肥/上、下午施肥;施肥浓度/对照浓度(950±50)/(350±50)μmol/molCO2)对根系生长及分泌物和伤流液组成的影响。结果表明,CO2施肥明显促进黄瓜幼苗根系发育,根系生物量显著增加;单株根系分泌物中氨基酸、糖、有机酸和酚酸总量增加,但单位鲜重根系分泌量却呈现增幅减少、无变化甚至降低趋势,说明单株分泌量增加主要由根系生长量的增加所引起。CO2施肥促进幼苗对养分的吸收,伤流液中矿质元素、ZT浓度增加,但GA、ABA和IAA浓度降低;与上午CO2施肥相比,上、下午均CO2施肥的效果更明显。CO2施肥促进了黄瓜幼苗根系发育及其代谢活性,为地上部的旺盛生长创造了条件。     

Rhizosphere microorganism effects on soluble amino acids,sugars and organic acids in the root zone ofAgropyron cristatum,A. smithii andBouteloua gracilis

Three axenic and rhizosphere microorganism-inoculated shortgrass steppe plant species were evaluated for possible differences in residual organic carbon and nitrogen present as sugars, organic acids and amino acids. IntroducedAgropyron cristatum was compared toA. smithii andBouteloua gracilis, which are dominant species in the native shortgrass steppe. These plants, grown for 90 days in root growth chambers, showed differences in residual organic carbon and nitrogen per gram of root, and rhizosphere microbe presence resulted in additional changes in these compounds. The root biomass ofB. gracilis was significantly increased with microbes present. TheAgropyron species had significantly lower amino acid levels with microbes present, while under the same conditions, theB. gracilis showed significant decreases in residual sugars. Based on the amino acids, sugars and organic acids, the C/N ratio of the sterileA. cristatum was higher than forB. gracilis. Rhizosphere microbe presence did not result in changes in these C/N ratios. These results suggest thatA. cristatum, with microbes present, will have lower levels of amino acids present, whileB. gracilis, with a lower C/N ratio, will have sugars used to a greater extent by the rhizosphere microbes. This resulted in the higher levels of residual soluble organic C and N in the rhizosphere ofB. gracilis, in comparison with the introducedA. cristatum. These differences may be critical in influencing the course of nutrient accumulation and plant competition in short-grass steppe communities, and in understanding basic aspects of plant-rhizosphere microorganism interactions.     

Quantitative and qualitative effects of phosphorus on extracts and exudates of sudangrass roots in relation to vesicular-arbuscular mycorrhiza formation

A comparison was made of water-soluble root exudates and extracts of Sorghum vulgare Pers. grown under two levels of P nutrition. An increase in P nutrition significantly decreased the concentration of carbohydrates, carboxylic acids, and amino acids in exudates, and decreased the concentration of carboxylic acids in extracts. Higher P did not affect the relative proportions of specific carboxylic acids and had little effect on proportions of specific amino acids in both extracts and exudates. Phosphorus amendment resulted in an increase in the relative proportion of arabinose and a decrease in the proportion of fructose in exudates, but did not have a large effect on the proportion of individual sugars in extracts. The proportions of specific carbohydrates, carboxylic acids, and amino acids varied between exudates and extracts. Therefore, the quantity and composition of root extracts may not be a reliable predictor of the availability of substrate for symbiotic vesicular-arbuscular mycorrhizal fungi. Comparisons of the rate of leakage of compounds from roots with the growth rate of vesicular-arbuscular mycorrhizal fungi suggest that the fungus must either be capable of using a variety of organic substrates for growth, or be capable of inducing a much higher rate of movement of specific organic compounds across root cell membranes than occurs through passive exudation as measured in this study.