云南古茶园栽培大叶茶和大理茶群体的叶绿体RPL32-TRNL核苷酸变异和遗传分化

对云南地区栽培的大叶茶（Camellia sinensis var. assamica）9个居群和大理茶（C.taliensis）3个居群的遗传多样性和居群遗传结构进行了比较研究。通过对94条叶绿体DNA RPL32-TRNL序列的核苷酸序列变异进行分析,共发现了7个单倍型。研究结果表明,大叶茶（h=0.728,π=0.00469）比大理茶（h=0.610,π=0.00225）拥有更为丰富的遗传变异,但其居群遗传分化水平（Gst=0.580,FST=0.612）却低于大理茶（Gst=0.696,FST=0.773）。AMOVA分析进一步证实了它们的遗传变异主要存在于居群间,且大叶茶（61.21%）低于大理茶（77.34%）。相对于大理茶,遗传多样性水平在本研究所取的大叶茶居群间存在着较大的差异,单倍型多态性水平变化范围为0~0.809,核苷酸多态性水平变化范围为0~0.00487。最后,讨论并提出了科学有效地保护我国古茶园茶种资源的建议和对策。     

云南南部野生大叶千斤拔资源遗传多样性的ISSR分析

应用ISSR分子标记技术,对云南南部7个地区的野生大叶千斤拔( Flemingia macrophylla)居群进行了遗传多样性分析。结果表明：云南野生大叶千斤拔具有较高的遗传多样性。在物种水平上,平均每个位点的多态位点百分率(PPL)为94.85％,有效等位基因数(Ne)为1.4627,Nei’s基因多样性指数(He)为0.2815, Shannon’s多样性信息指数(Ho)为0.4337;在居群水平上,PPL ＝43.44％,Ne ＝1.2981,He ＝0.1704,Ho ＝0.2499。基于Nei’ s遗传多样性分析可得出,居群间的遗传分化系数( Gst)为0.3975,表明居群内的遗传变异为60.25％,居群间的遗传变异为39.75％,这说明居群间的遗传分化要低于居群内的遗传分化。根据遗传多样性分析和聚类结果,应在大叶千金拔遗传多样性较高的勐腊易武( MY)、丘北( QB)和宁洱( NE)地区,设立保护点对其进行就地保护。     

栌菊木的等位酶分析及其在生物地理和保护生物学上的意义

对我国西南特有的菊科单种属植物栌菊木10个居群、149个个体、11个酶系统及16个酶位点的水平淀粉凝胶电泳分析表明,栌菊木的遗传多样性水平在特有种中较高,在居群水平上,平均每个位点的等位基因数A=1．1—1．4,多态位点百分数P=6．3％—43．8％,实际杂合度Ho=0．063～0．250,期望杂合度He=0．043～0．194;物种水平上A=1．6,P=37．5％,Ho=0．143,He=0．141。居群间遗传一致度I=0．902—1．000,杂合性基因多样度比率FST为0．2395。栌菊木居群间分化程度较大,云南南盘江流域碧云寺居群遗传多样性较低,明显低于金沙江流域的居群。栌菊木可能是来自冈瓦纳古陆祖先的后裔,可能是古地中海退却以后在金沙江干热河谷分化出来的特有属,并且可能由于湿度等生态因子的限制,其分布区未能进一步扩大,仅在南盘江流域形成零散分布。等位酶分析结果还表明栌菊木遗传多样性总体水平较高,建议对遗传多样性较高的金沙江流域的居群加以保护。     

硬核资源遗传多样性的AFLP分析（英文）

为了解云南省硬核[Scleropyrum wallichianum (Wight et Arn.) Arn.]的遗传多样性,采用AFLP标记分析了7个居群84份种质材料的遗传变异。结果表明,从64对引物组合中挑选出多态性较好的引物8对,共扩增出1 728条带,其中多态性条带1 388条,多态性百分率为80.14%。硬核在物种水平的多样性指数分别为Na=1.416, Ne=1.179, H=0.137, I=0.225,在居群水平上分别为H=0.111,I=0.175;在遗传相似性系数为0.52时,这些种质材料可分为3组,其中易武居群具有丰富的遗传变异,大部分的遗传变异存在于居群内,而在0.05置信区间内居群间遗传变异仅为11.5%;居群间的遗传距离和地理距离无显著相关性(r=0.0323, P=0.5820)。因此,硬核资源可采用就地和迁地保护策略,以增加其遗传多样性。     

黑龙江省野生秋子梨群体遗传结构的荧光AFLP分析

以来自黑龙江省海林市、东宁县和孙吴县3个居群的90个野生秋子梨株系为试材,利用荧光AFLP标记技术对野生秋子梨群体遗传多样性及遗传结构进行了分析,旨在为野生秋子梨种质资源的保护和利用提供科学依据。结果表明:野生秋子梨3个居群种群水平多态性位点百分比(P)为82.95%,Nei’s基因多样度(H)为0.1467,Shannon信息指数(I)为0.2397,野生秋子梨遗传多样性水平较低;3个居群的多态性位点百分比、基因多样度及Shannon信息指数比较,东宁居群>海林居群>孙吴居群,居群水平上东宁居群的遗传多样性较丰富;基因分化系数(GST=0.1008)显示,野生秋子梨的遗传变异主要发生在居群内;野生秋子梨居群间存在较大的基因流动(Nm=4.4603),说明3个野生秋子梨居群间存在着较频繁的基因交流;UPGMA聚类分析结果表明,3个居群是相对独立的孟德尔群体,且海林居群和东宁居群的遗传关系较近。3个居群中东宁居群遗传多样性最丰富,是进行原生境保护优先考虑的居群。     

核基因组微卫星标记揭示大理茶参与了普洱茶的驯化过程

利用11个核基因组微卫星标记对普洱茶3个居群、大理茶3个居群及过渡型大理茶2个居群共104株古茶树进行了遗传学分析。研究表明,普洱茶、大理茶和过渡型大理茶居群的遗传多样性相对较低,平均等位基因(Na)为4.852,平均香农多样性指数(I)为1.17,平均期望杂合度(He)和观测杂合度(Ho)分别为0.59和0.52,其中大理茶的遗传多样性水平低于普洱茶和过渡型大理茶。AMOVA分析表明,普洱茶和大理茶之间遗传分化显著(FST=0.305),遗传变异主要在居群内(分别为93.51%和89.41%),而居群间的遗传变异较低(分别为6.49%和10.59%)。主成分分析和STRUCTURE聚类分析均支持大理茶和普洱茶为不同的组,过渡型大理茶主要由大理茶驯化而来,并在栽培过程中与大理茶产生了遗传分化。在混栽的大理茶和普洱茶居群间存在由大理茶向普洱茶的明显基因渐渗,证实了大理茶参与了普洱茶的驯化过程。最后,讨论并提出了对大理茶和普洱茶古茶树资源保护的相关建议。     

基于16S rDNA测序对茶园土壤细菌群落多样性的研究

土壤细菌群落组成和多样性,对茶园土壤生态系统健康和肥力可持续性具有的重要理论意义。利用Illumina高通量测序技术测定分析16S rDNA,研究云南景迈山、布朗山和南糯山的现代茶园、古茶园(林)和森林土壤的细菌群落结构与多样性。结果表明:古茶园土壤细菌的丰度和多样性高于现代茶园及森林;研究土壤样本细菌共分属47个菌门、89个目,其中变形菌门、酸杆菌门、放线菌门、厚壁菌门与拟杆菌门是优势类群,它们在森林、现代茶园和古茶园土壤中的相对丰度累计分别达91.86%、82.48%和77.08%;伯克霍尔德氏菌目、根瘤菌目是优势菌群,其平均丰度分别达13.91%和8.17%,黄单胞菌目、红螺菌目、芽孢杆菌目、放线菌目和拟杆菌目等12个目的丰度较高,达2%以上;PCA分析表明:森林、现代茶园和古茶园土壤的细菌群落结构差异明显,除景迈山外,主要优势细菌丰度依次为:古茶园现代茶园森林,古茶园土壤细菌多样性有增强趋势。     

武陵山区蛇足石杉遗传多样性的AFLP分析

采用AFLP分子标记对武陵山区蛇足石杉(Huperzia serrata)4个居群进行遗传多样性的研究,结果表明:(1)7对引物组合共扩增出条带615条,其中549条为多态性条带;在物种水平上,多态性条带百分率PPB=89.27%,有效等位基因数Ne=1.257,Nei’s基因多样度指数H=0.178,Shannon多样性信息指数Isp=0.298;在居群水平上,PPB=71.42%,Ne=1.235,H=0.154,Shannon多样性信息指数Ipop=0.251;遗传多样性在居群间有明显的差别,其中坪坝营(PBY)居群最高(PPB=81.95%),而铁峰山(TFS)居群最低(PPB=64.55%)。(2)居群间的遗传分化较低,基于Nei’s基因多样性分析结果显示,居群间遗传分化系数GST=0.159;Shannon’s居群分化系数[(Isp-Ipop)/Isp]为0.16;WINAMOVA分析显示,武陵山区蛇足石杉的遗传变异主要存在于居群内,居群内的遗传变异分量为65.057,占总变异的75.77%,而居群间的遗传变异分量为20.804,占总变异的24.23%;居群内存在极显著的遗传分化(ΦST=0.242,P0.001)。(3)由遗传分化系数(GST)估计,武陵山区蛇足石杉居群间的基因流Nm=2.647,表明蛇足石杉属于异交种。(4)两两居群间的Nei’s遗传一致度(IN)范围为0.031 0~0.969 4;Mantel检测结果显示,居群间的遗传距离与地理距离之间不存在显著的正相关关系(r=0.269,P=0.887)。研究认为,遗传多样性与遗传结构主要决定于居群历史,较少干扰而稳定的居群偏向克隆生殖,遗传多样性较低,而新建居群的遗传多样性则较高;克隆生长、生态位选择、异交,以及有效的孢子风媒传播等可能是其维持较高遗传多样性水平的因素,而过度采挖等人类活动和生境片断化是导致蛇足石杉濒危的主要因素。     

具混合繁殖策略的草本植物异果舞花姜的居群遗传结构

 居群遗传结构的形成受到各种因素的影响。其中, 繁殖方式可能对居群内遗传变异有极其重要的意义, 而距离隔离也是居群间变异产 生的主要原因之一。异果舞花姜(Globba racemosa)具有混合繁殖策略(以种子进行有性繁殖和以珠芽进行无性克隆繁殖)。调查分布于云南的7 个异果舞花姜居群间有性与无性克隆繁殖的差异。采用ISSR标记研究各个居群的遗传多样性与克隆多样性, 探讨繁殖方式和距离隔离对居群遗 传结构的影响。调查结果表明, 异果舞花姜各个居群存在一定的繁殖差异。ISSR结果显示, 该种在种水平上呈现较高水平的遗传变异 (PPB=71.19%), 大部分的变异来自于居群间(G_ST = 0.590 7)。同时, 异果舞花姜具有较高水平克隆多样性(G/N = 0.88)。遗传多样性和克隆多 样性与繁殖水平的变异间相关性不明显, 说明繁殖方式不是居群遗传结构形成的必要和决定性的因素。居群间的地理距离与遗传距离显著相关 (r = 0.68, p < 0.05), 表明距离隔离是居群间遗传变异形成的重要原因。其它因素(如少量新有性个体的补充、细胞突变、奠基效应等)也对 异果舞花姜居群遗传结构的形成和维持起到了重要作用。     

核基因组微卫星标记揭示大理茶参与了普洱茶的驯化过程?

利用11个核基因组微卫星标记对普洱茶3个居群、大理茶3个居群及过渡型大理茶2个居群共104株古茶树进行了遗传学分析。研究表明,普洱茶、大理茶和过渡型大理茶居群的遗传多样性相对较低,平均等位基因(Na)为4?852,平均香农多样性指数(I)为1?17,平均期望杂合度(He)和观测杂合度( Ho)分别为0?59和0?52,其中大理茶的遗传多样性水平低于普洱茶和过渡型大理茶。 AMOVA分析表明,普洱茶和大理茶之间遗传分化显著( FST＝0?305),遗传变异主要在居群内(分别为93?51％和89?41％),而居群间的遗传变异较低(分别为6?49％和10?59％)。主成分分析和STRUCTURE聚类分析均支持大理茶和普洱茶为不同的组,过渡型大理茶主要由大理茶驯化而来,并在栽培过程中与大理茶产生了遗传分化。在混栽的大理茶和普洱茶居群间存在由大理茶向普洱茶的明显基因渐渗,证实了大理茶参与了普洱茶的驯化过程。最后,讨论并提出了对大理茶和普洱茶古茶树资源保护的相关建议。     

不同生境条件与管理方式对茶园蜘蛛群落结构及多样性的影响

蜘蛛在茶园的生态控制和生物防治中起到重要的作用,为了解不同生境条件和管理方式的茶园蜘蛛群落结构差异和多样性变化,于2011年3月份—2011年10月份,运用振落承接和过筛法对3种不同类型茶园的蜘蛛群落组成与多样性进行了调查。结果表明:(1)3种类型茶园蜘蛛群落组成:3种类型茶园蜘蛛群落在科、属、种的组成及个体数量上,均表现为有机茶园高,无公害茶园次之,普通茶园低,且在物种数和个体数存在显著差异。管巢蛛科和狼蛛科是3种类型茶园的优势类群,球蛛科、跳蛛科、狼蛛科、皿蛛科的物种优势度大于10%。(2)蜘蛛群落物种多样性的多重分析结果表明,有机茶园蜘蛛群落的个体数、物种数、物种多样性指数、物种丰富度指数和均匀度指数均高于无公害茶园和普通茶园,普通茶园最低,且达到显著水平(P0.05)。(3)多元数据分析结果表明,有机茶园蜘蛛群落组成与普通茶园差异较大,无公害茶园与普通茶园蜘蛛群落组成差异较小;3种类型茶园的茶丛蜘蛛群落个体数、物种数及物种多样性指数、丰富度指数和均匀度指数均高于地表,且表现为机茶园多,无公害茶园次之,普通茶园最少。蜘蛛的功能群采集发现,在3种茶园中结网蜘蛛少,而主要是游猎蜘蛛。(4)不使用化学农药的茶园,因其周边生境结构复杂(竹林、小灌木及杂草),植被丰富,形成植被缓冲带,改善了茶园小气候环境,增加了茶园土表覆盖度,可明显提高茶丛和地表游猎蜘蛛的物种数和个体数量。综合研究结果表明,在生态条件好、干扰少的有机茶园中的蜘蛛物种数量、群落多样性明显高于受损生态系统和人为干扰强的普通茶园。     

Assessment of genetic diversity of Korean native pig (Sus scrofa) using AFLP markers

In order to assess the genetic diversity and genetic relationships among the six commercial pig breeds including the Korean native pig, we performed an amplified fragment length polymorphism (AFLP) analysis. Applying the three EcoRI/TagI primer combinations to 54 individual pig samples out of six breeds, a total of 186 AFLP bands were generated, 67 (36%) of which were identified as polymorphic bands. From these polymorphic bands, the three estimates (percentage of polymorphic loci, Neis heterozygosity and Shannon index) of genetic diversity, G(ST) estimates, Neis unbiased genetic distance and two indices of genetic similarity were calculated. From all the calculations of genetic diversity, the lowest genetic diversity was exhibited in the Korean native pig, and the highest in the Chinese Yanbian pig. Given the mean G(ST) value (G(ST) = 0.390) across all pigs examined, levels of apparent breed subdivision were considerable. A UPGMA tree of individuals based on Jaccards similarity index showed that the Korean native pig formed a distinct cluster from the other five pigs. In addition, the tree displayed that all the individuals except for six individuals were grouped into their breeds. Principal component analysis based on the binary data matrix of either presence or absence confirmed the distinctness of the Korean native pig from the other pigs. Our results indicate that the Korean native pig has a low level of genetic diversity and is distinct from the five pig breeds, confirming the results from previous microsatellite data. The findings also suggest that AFLP analysis may be a valuable tool for revealing genetic relationships and genetic diversity among different pig breeds.     

Amplified fragment length polymorphism (AFLP) in soybean: species diversity, inheritance, and near-isogenic line analysis

Amplified fragment length polymorphism (AFLP) analysis is a PCR-based technique capable of detecting more than 50 independent loci in a single PCR reaction. The objectives of the present study were to: (1) assess the extent of AFLP variation in cultivated (Gycine max L. Merr.) and wild soybean (G. soja Siebold & Zucc.), (2) determine genetic relationships among soybean accessions using AFLP data, and (3) evaluate the usefulness of AFLPs as genetic markers. Fifteen AFLP primer pairs detected a total of 759 AFLP fragments in a sample of 23 accessions of wild and cultivated soybean, with an average of 51 fragments produced per primer pair per accession. Two-hundred and seventy four fragments (36% of the total observed) were polymorphic, among which 127 (17%) were polymorphic in G. max and 237 (31%) were polymorphic in G. soja. F₂ segregation analysis of six AFLP fragments indicated that they segregate as stable Mendelian loci. The number of polymorphic loci detected per AFLP primer pair in a sample of 23 accessions ranged from 9 to 27. The AFLP phenotypic diversity values were greater in wild than in cultivated soybean. Cluster and principal component analyses using AFLP data clearly separated G. max and G. soja accessions. Within the G. max group, adapted soybean cultivars were tightly clustered, illustrating the relatively low genetic diversity present in cultivated soybean. AFLP analysis of four soybean near-isogenic lines (NILs) identified three AFLP markers putatively linked to a virus resistance gene from two sources. The capacity of AFLP analysis to detect thousands of independent genetic loci with minimal cost and time requirements makes them an ideal marker for a wide array of genetic investigations.     

西双版纳不同林茶复合生态系统碳储量

为了探明上层遮荫树种对茶园碳储量的影响,根据所建立的茶园上层树种及茶树的生物量模型估算了不同林茶复合生态系统的生物量,结合植物、土壤样品碳含量的实测值,对西双版纳州勐海县4种茶园组合模式及纯茶园的碳储量进行了分析。结果表明:樟树+茶、樟-杉+茶2种组合模式的碳储量分别比纯茶园碳储量(223.442t·hm-2)高22.701、3.871t·hm-2,而4种遮荫树种+茶、6种遮荫树种+茶2种组合模式的碳储量则分别比纯茶园低10.828、5.717t·hm-2。各茶园总碳储量以土壤的碳储量所占比例最大,达91.8%～96.0%,随上层树种数量的增加而降低,并在4种遮荫树种+茶组合模式达到最低;而植物体的碳储量仅占总碳储量的4.0%～8.2%,呈现随上层树种数量增加而先增加后降低的趋势。表明西双版纳的人工茶园复合态系统具有很强的碳储存能力。     

广东甘蔗品种遗传多样性的AFLP分析

采用15对多态性较好的AFLP引物对广东育成的41个甘蔗品种的遗传多样性进行分析.结果表明:每对引物的多态性位点平均为61.5,多态性位点百分率为77.40%.41个甘蔗品种间的遗传相似系数为0.5210～0.9211,平均为0.6842,遗传多样性属中等水平.聚类分析把41个品种分为2大类,在系谱中亲缘关系密切的大多数品种,如粤农81-762与粤农85-1285和粤农86-295,粤糖57-423与粤糖85-5和粤糖85-177等都能分别聚在一起.但也有例外,如粤糖83-251和粤糖83-271,都是CP72-1210×华南56-12组合的后代,但没有归为同一类.遗传多样性指数分析显示,不同年代的品种多样性指数差异明显,最高是80年代,为0.3072,最低是60年代,为0.1162;不同单位选育的品种遗传多样性指数变化不大,为0.2756～0.3061.加强新种质利用是有效提高甘蔗品种遗传多样性的重要措施.     

不同海拔茶园害虫、天敌种群及其群落结构差异

为了明确不同海拔茶园之间害虫、天敌种群及其群落结构的差异,为茶园害虫综合防治提供科学依据,采用平行跳跃抽样调查方法分别对海拔698.6m,270m和46m的高、中、低海拔茶园进行调查,并进行方差分析,进而用新复极差法进行多重比较,结果表明,以样方为单位3种海拔中差异极显著的害虫是假眼小绿叶蝉、柑桔粉虱、茶短须螨、茶黄蓟马、琥珀广翅蜡蝉和绿螽蟖;差异极显著的天敌是八点球腹蛛、锥腹肖蛸、日本球服蛛和茶色新圆蛛。数量居于3种海拔第一位的物种：高海拔茶园主要害虫为假眼小绿叶蝉、柑橘粉虱、茶短须螨和绿螽蟖,天敌为锥腹肖蛸蛛和八点球腹蛛;中海拔茶园害虫为茶黄蓟马和红蜡蚧,天敌为粽管巢蛛;低海拔茶园天敌为茶色新园蛛和日本球腹蛛。高海拔的主要害虫还有茶黄蓟马和琥珀广翅蜡蝉,主要天敌还有草间小黑蛛、茶色新圆蛛和日本球腹蛛;中海拔的主要害虫还有假眼小绿叶蝉和茶短须螨,主要天敌还有八点球腹蛛、草间小黑蛛、锥腹肖蛸、拟环纹狼蛛、三突花蟹蛛;低海拔的主要害虫有假眼小绿叶蝉、茶黄蓟马、柑桔粉虱和红蜡蚧,主要天敌还有八点球腹蛛、锥腹肖蛸、草间小黑蛛、粽管巢蛛和异色瓢虫。3种海拔茶园之间节肢动物群落多样性指数、个体数和均匀度差异均极显著,物种数差异不显著,3种海拔茶园之间植食性昆虫亚群落的多样性和物种数差异均不显著,个体数和均匀度差异均极显著。3种海拔茶园之间天敌亚群落的多样性指数、物种数和个体数差异均极显著。总群落多样性指数和群落相对稳定性值均是低海拔茶园最大。     

Conservation genetics of endangeredBrasenia schreberi based on RAPD and AFLP markers

Brasenia schreberi J.F. Gmelin is a declared endangered species found in the lakes and ponds of South Korea. For planning its conservation strategy, we examined the genetic diversity within and among six populations, using randomly amplified polymorphic DNA (RAPD) and amplified fragment length polymorphism (AFLP). Polymorphisms were more frequently detected per loci with AFLP (69.3%) than RAPD (36.8%). High genetic diversity was recognized within populations: polymorphic loci (PPL) values ranged from 36.3% in the CJM population to 74.5% in the GGT population, with a mean value of 47.8% based on AFLP markers. Great genetic differentiation (θ^B) was detected among the six populations (0.670 on RAPD and 0.196 on AFLP), and we calculated a low rate of gene flow (N_em), i.e., 0.116 on RAPD and 0.977 on AFLP. Furthermore, a Mantel test revealed that no correlation existed between genetic distances and geographical distances among the six local populations, based on RAPD or AFLP markers. These results are attributed to a number of factors, including an insufficient length of time for genetic diversity to be reduced following a natural decline in population size and isolation, adaptation of the genetic system to small population conditions, and a restricted gene flow rate. Based on both its genetic diversity and population structure, we suggest that a strategy for conserving and restoringB. schreberi must focus on maintaining historical processes, such as high levels of outbreeding, while monitoring increased gene flow among populations. This is because a reduction in genetic diversity as a result of genetic drift is undesirable.     

Identification of candidate AFLP markers for shell color of the Pacific oyster (Crassostrea gigas) under artificial selection

The shell color of the Pacific oyster (Crassostrea gigas) is a desirable trait, but only a few genetic studies on shell color have been documented. Through successive selective breeding, four shell color variants of white (W), gold (G), black (B) and purple (P) C. gigas have been developed. The amplified fragment length polymorphism (AFLP) technique was used to scan the genomes of the four variants with different shell colors and one wild population (C) to identify candidate markers for shell polymorphism. Fifteen AFLP primer combinations were used, 1079 loci were scored as polymorphic loci, and the percentage of polymorphic bands was 95.5%. In the gold, white, black, purple and wild populations, the percentages of polymorphic loci were estimated to be 90.5% (G), 90.0% (W), 91.1% (B), 95.3% (P) and 93.2% (C); the expected heterozygosity values were 0.3115 (G), 0.3044 (W), 0.3102 (B), 0.3285 (P) and 0.3105 (C). The white shell variant was observed to have slightly lower genetic diversity than others, with a F_ST value of 0.1483. These results indicated that the four different shell color variants had high genetic diversity and that the genetic differentiation of populations mostly results from genetic diversity of individuals within populations. Furthermore, 11 outlier loci were considered candidate markers for shell color. This work provides new insights on relationships among color variants of C. gigas.     

中间球海胆、光棘球海胆及杂交F1代（中间球海胆♀×光棘球海胆♂）群体遗传多样性AFLP分析

应用AFLP技术对中间球海胆、光棘球海胆及杂交F1代（中间球海胆♀×光棘球海胆♂）群体的遗传多样性进行了分析。结果表明,4对引物共扩增得到272个位点,其中269个多态位点,总的多态位点比例为98.89%。3个群体的香农多样性指数分别为：0.2331±0.1273、0.2005±0.1385和0.2625±0.1067。群体内遗传相似度分别为：0.6876±0.0523、0.6501±0.0548和0.6552±0.0553。分子方差分析（AMOVA）结果表明,变异来源有25.39%来自群体间,有74.61%来自群体内,群体内的遗传多样性比较丰富。尽管杂交海胆在表型上可以明显分成两种类型,但是通过AFLP统计的遗传距离进行的个体聚类却随机聚在一起,不能分成两个群体。     

A preliminary study for identification of candidate AFLP markers under artificial selection for shell color in pearl oyster Pinctada fucata

Pearl oyster Pinctada fucata is widely cultured to produce seawater pearl in South China, and the quality of pearl is significantly affected by its shell color. Thus the Pearl Oyster Selective Breeding Program (POSBP) was carried out for the shell color and growth traits. The black (B), gold (G), red (R) and white (W) shell strains with fast growth trait were achieved after five successive generation selection. In this study, AFLP technique was used to scan genome of four strains with different shell colors to identify the candidate markers under artificial selection. Eight AFLP primer combinations were screened and yielded 688 loci, 676 (98.26%) of which were polymorphic. In black, gold, red and white strains, the percentage of polymorphic loci was 90.41%, 87.79%, 93.60% and 93.31%, respectively, Nei's gene diversity was 0.3225, 0.2829, 0.3221 and 0.3292, Shannon's information index was 0.4801, 0.4271, 0.4825 and 0.4923, and the value of F_ST was 0.1805. These results suggested that the four different shell color strains had high genetic diversity and great genetic differentiation among strains, which had been subjected to the continuous selective pressures during the artificial selective breeding. Furthermore, six outlier loci were considered as the candidate markers under artificial selection for shell color. This study provides a molecular evidence for the inheritance of shell color of P. fucata.