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1.
Fine mapping of the Co-4 locus of common bean reveals a resistance gene candidate, COK-4, that encodes for a protein kinase 总被引:1,自引:0,他引:1
M. Melotto J. D. Kelly 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2001,103(4):508-517
The SAS13 SCAR marker, tightly linked with the Co-4
2
gene segregating in a population of 1018 F2 individual plants, was used as a starting point for cloning gene sequences associated with the Co-4 locus that conditions resistance to anthracnose caused by the fungal pathogen Colletotrichum lindemuthianum in common bean (Phaseolus vulgaris). A contig developed from genomic clones flanking the marker region revealed a 1110-bp open reading frame, named COK-4. The predicted COK-4 protein contains a serine-threonine kinase domain highly similar to the protein encoded by the Pto gene in tomato, but with a highly hydrophobic membrane-spanning region. COK-4 homologs were cloned and sequenced from different bean cultivars. Single nucleotide polymorphisms were found between the
homologous sequences and were confirmed with three restriction enzymes. Restriction patterns among three bean cultivars known
to possess different alleles at the Co-4 locus, SEL 1308 (Co-4
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), TO (Co-4) and Black Magic (co-4), were polymorphic. Absolute co-segregation between COK-4 restriction patterns and the disease phenotype was observed in 96 F3 families. More than one copy of the COK-4 gene homolog exists in the bean genome as demonstrated by Southern analysis. These results suggest that COK-4 is part of the Co-4 locus conditioning resistance to C. lindemuthianum in bean.
Received: 22 June 2000 / Accepted: 20 November 2000 相似文献
2.
Maeli Melotto Claudia B Monteiro-Vitorello Adriano G Bruschi Luis E A Camargo 《Génome》2005,48(3):562-570
To rapidly and cost-effectively generate gene expression data, we developed an annotated unigene database of common bean (Phaseolus vulgaris L.). In this study, 3 cDNA libraries were constructed from the bean breeding line SEL1308, 1 from young leaf and 2 from seedlings inoculated or not inoculated with the fungal pathogen Colletotrichum lindemuthianum (Sacc. & Magnus) Briosi & Cavara, which causes anthracnose in common bean. To this date, 5255 single-pass sequences have been included in the database after selection based on sequence quality. These ESTs were trimmed and clustered using the computer programs Phred and CAP3 to form a unigene collection of 3126 unique sequences. Within clusters, 318 single nucleotide polymorphisms (SNPs) and 68 insertions-deletions (indels) were found, indicating the presence of paralogous gene families in our database. Each unigene sequence was analyzed for possible function using their similarity to known genes represented in the GenBank database and classified into 14 categories. Only 314 unigenes showed significant similarities to Phaseolus genomic sequences and P. vulgaris ESTs, which indicates that 90% (2818 unigenes) of our database represent newly discovered common bean genes. In addition, 12% (387 unigenes) were shown to be specific to common bean. This study represents a first step towards the discovery of novel genes in beans and a valuable source of molecular markers for expressed gene tagging and mapping. 相似文献
3.
普通菜豆抗炭疽病基因鉴定与分子标记 总被引:3,自引:1,他引:2
菜豆炭疽病是世界菜豆生产中的主要病害之一,使幕豆产量和品质受到严重影响,对抗炭疽病基因的研究可以为培育抗炭疽病品种奠定基础。幕豆炭疽病病菌生理分化比较复杂,由于菜豆品种的抗病性和地域不同,菜豆炭疽菌的致病性分化不同。10个已知抗炭疽病基因中,9个基因(Co-1、Co-2、Co-3/Co-9、Co-4^2、Co-5、Co-6、Co-7、Co-10)已被确认为独立显性基因,其中Co-3/Co-9是等位基因;Co-1、Co-4和Co-9存在等位基因,co-8为隐性基因。除Co-5、Co-7和co-8三个基因还没有被定位外,其他基因被定位在不同的连锁群上。 相似文献
4.
5.
Distinct post-transcriptional modifications result into seven alternative transcripts of the CC–NBS–LRR gene JA1tr of Phaseolus vulgaris 总被引:1,自引:0,他引:1
Ferrier-Cana E Macadré C Sévignac M David P Langin T Geffroy V 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2005,110(5):895-905
6.
菜豆多聚泛肽基因在重金属胁迫下的表达 总被引:1,自引:0,他引:1
差别筛选HgCl2胁迫的菜豆(PhaseolusvulgarisL.)幼苗叶片cDNA库,分离出两个重金属胁迫相应基因PvSR5和PvSR51(Phaseolusvulgarisstress_relatedgene)片段。cDNA和氨基酸序列分析表明PvSR5和PvSR51分别编码一种多聚泛肽。Northernblot分析表明多聚泛肽是组成性表达蛋白,主要在根中表达,叶片和茎中表达较少;Hg、Cd、Cu和Zn等重金属、高温和水杨酸能强烈地刺激其在叶片中的表达,而受伤几乎没有影响。推测多聚泛肽在抵抗重金属胁迫和提高植物的抗逆性方面有重要作用。 相似文献
7.
Elena Pérez-Vega Noemí Trabanco Ana Campa Juan José Ferreira 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2013,126(6):1503-1512
Powdery mildew (PM) is a serious disease in many legume species, including the common bean (Phaseolus vulgaris L.). This study investigated the genetic control behind resistance reaction to PM in the bean genotype, Cornell 49242. The results revealed evidence supporting a qualitative mode of inheritance for resistance and the involvement of two independent genes in the resistance reaction. The location of these resistance genes was investigated in a linkage genetic map developed for the XC RIL population. Contingency tests revealed significant associations for 28 loci out of a total of 329 mapped loci. Fifteen were isolated or formed groups with less than two loci. The thirteen remaining loci were located at three regions in linkage groups Pv04, Pv09, and Pv11. The involvement of Pv09 was discarded due to the observed segregation in the subpopulation obtained from the Xana genotype for the loci located in this region. In contrast, the two subpopulations obtained from the Xana genotype for the BM161 locus, linked to the Co-3/9 anthracnose resistance gene (Pv04), and from the Xana genotype for the SCAReoli locus, linked to the Co-2 anthracnose resistance gene (Pv11), exhibited monogenic segregations, suggesting that both regions were involved in the genetic control of resistance. A genetic dissection was carried out to verify the involvement of both regions in the reaction to PM. Two resistant recombinant lines were selected, according to their genotypes, for the block of loci included in the Co-2 and Co-3/9 regions, and they were crossed with the susceptible parent, Xana. Linkage analysis in the respective F2 populations supported the hypothesis that a dominant gene (Pm1) was located in the linkage group Pv11 and another gene (Pm2) was located in the linkage group Pv04. This is the first report showing the localization of resistance genes against powdery mildew in Phaseolus vulgaris and the results offer the opportunity to increase the efficiency of breeding programs by means of marker-assisted selection. 相似文献
8.
F Creusot C Macadré E Ferrier Cana C Riou V Geffroy M Sévignac M Dron T Langin 《Génome》1999,42(2):254-264
Co-2 is one of the R-genes against anthracnose identified in common bean. A RAPD marker, cloned as PvH20, was previously shown to contain 6 imperfect leucine-rich-repeats and to reveal a family of related sequences in the vicinity of the Co-2 locus. Using PvH20 as probe, a genomic clone and 2 partial cDNAs were isolated. DNA sequencing revealed that the 6.1 kb genomic fragment contains sequences encoding both NBS-LRR (ORF1) and kinase-like (ORF2) products. The 2 partial cDNAs (cD7 and cD8) belong to the NBS-LRR subfamily as do most of the resistance genes cloned to date. The LRR domain of ORF1 is interrupted by 2 stop codons suggesting that it corresponds to a non-functional member of the multigene family and ORF2 appears to be a kinase pseudogene. The 3 NBS-LRR polypeptides share a high level of amino acid identity and represent different members of a related family. By genetic mapping ORF1, cD7, and cD8 were found to span a genetic distance of 3 cM: cD8 maps at 2 cM from Co-2 and 3 cM from ORF1, cD7 maps at 1 cM from ORF1 and co-segregates with Co-2, thus cD7 might be a putative candidate for the Co-2 R-gene. 相似文献
9.
Disease-resistance related sequences in common bean. 总被引:11,自引:0,他引:11
Primers based on a conserved nucleotide binding site (NBS) found in several cloned plant disease resistance genes were used to amplify DNA fragments from the genome of common bean (Phaseolus vulgaris). Cloning and sequence analysis of these fragments uncovered eight unique classes of disease-resistance related sequences. All eight classes contained the conserved kinase 2 motif, and five classes contained the kinase 3a motif. Gene expression was noted for five of the eight classes of sequences. A clone from the SB3 class mapped 17.8 cM from the Ur-6 gene that confers resistance to several races of the bean rust pathogen Uromyces appendiculatus. Linkage mapping identified microclusters of disease-resistance related sequence in common bean, and sequences mapped to four linkage groups in one population. Comparison with similar sequences from soybean (Glycine max) revealed that any one class of common bean disease-resistance related sequences was more identical to a soybean NBS-containing sequence than to the sequence of another common bean class. 相似文献
10.
The gene encoding a key enzyme in anthocyanin biosynthesis, phenylalanine ammonia-lyase (PAL), was cloned from soybean (Glycine max). The purpose was to obtain a molecular probe to study the organization of this gene family in soybean and to examine novel regulatory mechanisms present in the anthocyanin biosynthetic pathway of this system. A soybean genomic library was constructed in the bacteriophage vector lambda Charon 35. A PAL cDNA clone from Phaseolus vulgaris was used in screening the library, and two PAL genes were isolated. One gene was sequenced entirely and analyzed by sequence homology to the PAL2 gene of Phaseolus vulgaris. Genomic analysis indicates that PAL sequences of Glycine max exist as a small gene family consisting of only two to three members. The representative PAL gene sequenced (PAL1) has a coding region of 2142 basepairs divided among two exons. The single intron is 1519 basepairs and splits the 131st codon. 相似文献
11.
Phaseolin is the major seed storage protein of common bean (Phaseolus vulgaris L.). It is encoded by a small multigene family of 6-9 genes that are clustered in a single complex locus (Phs). We have constructed a long-range restriction map of the phaseolin genomic region, including the Phs locus and two flanking marker loci, D1861 and Bng060. Using a combination of high molecular weight DNA isolation, one- and two-dimensional pulsed-field gel electrophoresis of single and double restriction digests followed by Southern hybridization, and PCR analysis of individual fragments, we found that: (i) the maximum size of the Phs locus is 190 kb, (ii) the Phs locus may have increased in size during the evolution of P. vulgaris, (iii) the genomic region marked by D1861-Phs-Bng060 spans 5 cM, which corresponds to a maximum of 1.9 Mb, and (iv) the Phs locus could be oriented with respect to the two adjacent markers. Further progress in determining the gene arrangement in the Phs locus will require cloning and analysis of large DNA fragments containing phaseolin genes via BAC libraries. Key words : multigene family, physical distance, genome mapping, seed protein. 相似文献
12.
Rodríguez-Suárez C Ferreira JJ Campa A Pañeda A Giraldez R 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2008,116(6):807-814
Resistance to races 19, 31, 38, 65, 73, 102, and 449, of the pathogenic fungus Colletotrichum lindemuthianum (anthracnose) was evaluated in F3 families derived from the cross between the anthracnose differential bean cultivars Mexico 222 (resistant to races 19, 31,
and 38) and Widusa (resistant to races 38, 65, 73, 102, and 449). Molecular marker analyses were carried out in the corresponding
F2 individuals in order to identify the genes for anthracnose resistance present in these two differential cultivars. The results
of the combined segregation indicate that the resistance to anthracnose races 19, 31, and 38, present in Mexico 222, is conferred
by single dominant race-specific genes organized in a cluster located in B4 linkage group, corresponding to the previously
described Co-3/Co-9 locus. The resistance to anthracnose races 65, 73, 102, and 449, present in Widusa, is conferred by a dominant gene (or genes)
representing a different haplotype of the same Co-3/Co-9 cluster. A single dominant gene located in a position independent from cluster Co-3/Co-9 (probably at the Co-1 locus) confers specific resistance to race 38 in Widusa. Recombinants for closely linked resistance specificities belonging
to the Co-3/Co-9 cluster have been detected. The possibility of pyramiding race-specific resistance genes by means of intra-cluster recombination,
and its potential use in plant breeding, is indicated.
C. Rodríguez-Suárez and J.J. Ferreira equally share for authorship. 相似文献
13.
One restriction to the cultivation of common bean, Phaseolus vulgaris L., is its limited tolerance to low temperatures. In the present study, subtraction suppression hybridization was employed to enrich for stress responsive genes in both a chilling-susceptible common bean and a relatively more chilling-tolerant wild bean species, Phaseolus angustissimus. For each species, approximately 11 000 expressed sequence tags were generated. Comparative sequence analysis of the EST collection with the available annotated genome sequences of the model Fabaceae species Medicago truncatula and Glycine max identified protein homologues for approximately 65% and 80% of the Phaseolus sequences, respectively. This difference reflects the closer phylogenetic relationship between the genera Phaseolus and Glycine compared with Medicago. Annotation of the Phaseolus sequences was facilitated through this comparative analysis and indicated that several heat shock proteins, cytochrome P450s, and DNA binding factors were uniquely found among the sequences from the wild species P. angustissimus. The Phaseolus sequences have been made available on a GBrowse implementation using M. truncatula as the reference genome, providing rapid access to the sequence data and associated comparative genome data. 相似文献
14.
Development, characterization, and comparative analysis of polymorphism at common bean SSR loci isolated from genic and genomic sources. 总被引:4,自引:0,他引:4
Luiz Ricardo Hanai Tatiana de Campos Luis Eduardo Aranha Camargo Luciana Lasry Benchimol Anete Pereira de Souza Maeli Melotto Sérgio Augusto Moraes Carbonell Alisson Fernando Chioratto Luciano Consoli Eduardo Fernando Formighieri Marcos Vinícius Bohrer Monteiro Siqueira Siu Mui Tsai Maria Lucia Carneiro Vieira 《Génome》2007,50(3):266-277
Microsatellites or SSRs (single sequence repeats) have been used to construct and integrate genetic maps in crop species, including Phaseolus vulgaris. In the present study, 3 cDNA libraries generated by the Bean EST project (http://lgm.esalq.usp.br/BEST/), comprising a unigene collection of 3126 sequences and a genomic microsatellite-enriched library, were analyzed for the presence of SSRs. A total of 219 expressed sequence tags (ESTs) were found to carry 240 SSRs (named EST-SSR), whereas 714 genomic sequences contained 471 SSRs (named genomic-SSR). A subset of 80 SSRs, 40 EST-SSRs, and 40 genomic-SSRs were evaluated for molecular polymorphism in 23 genotypes of cultivated beans from the Mesoamerican and Andean genetic pools, including Brazilian cultivars and 2 related species. Of the common bean genotypes, 31 EST-SSR loci were polymorphic, yielding 2-12 alleles as compared with 26 polymorphic genomic-SSRs, accounting for 2-7 alleles. Cluster analysis from data using both genic and genomic-SSR revealed a clear separation between Andean and Mesoamerican beans. The usefulness of these loci for distinguishing bean genotypes and genetic mapping is discussed. 相似文献
15.
Rodríguez-Suárez C Méndez-Vigo B Pañeda A Ferreira JJ Giraldez R 《TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik》2007,114(4):713-722
A genetic map of common bean was constructed using 197 markers including 152 RAPDs, 32 RFLPs, 12 SCARs, and 1 morphological
marker. The map was established by using a F2 population of 85 individuals from the cross between a line derived from the Spanish landrace Andecha (Andean origin) and
the Mesoamerican genotype A252. The resulting map covers about 1,401.9 cM, with an average marker distance of 7.1 cM and includes
molecular markers linked to disease resistance genes for anthracnose, bean common mosaic virus, bean golden yellow mosaic
virus, common bacterial blight, and rust. Resistance to races 6, 31, 38, 39, 65, and 357 of the pathogenic fungus Colletotrichum lindemuthianum (anthracnose) was evaluated in F3 families derived from the corresponding F2 individuals. The intermediate resistance to race 65 proceeding from Andecha can be explained by a single dominant gene located
on linkage group B1, corresponding to the Co-1 gene. The recombination between the resistance specificities proceeding from A252 agrees with the assumption that total resistance
to races 6, 31, 38, 39, 65, and 357, is organized in two clusters. One cluster, located on B4 linkage group, includes individual
genes for specific resistance to races 6, 38, 39, and 357. The second cluster is located on linkage group B11 and includes
individual genes for specific resistance to races 6, 31, 38, 39, and 65. These two clusters correspond to genes Co-3/Co-9 and Co-2, respectively. It is concluded that most anthracnose resistance Co- genes, previously described as single major genes conferring resistance to several races, could be organized as clusters
of different genes conferring race-specific resistance.
C. Rodríguez-Suárez and B. Méndez-Vigo equally share for authorship. 相似文献
16.
Andrew J. Burt H. Manilal William Gregory Perry Raja Khanal K. Peter Pauls James D. Kelly Alireza Navabi 《PloS one》2015,10(10)
Anthracnose, caused by Colletotrichum lindemuthianum, is an important fungal disease of common bean (Phaseolus vulgaris). Alleles at the Co–4 locus confer resistance to a number of races of C. lindemuthianum. A population of 94 F4:5 recombinant inbred lines of a cross between resistant black bean genotype B09197 and susceptible navy bean cultivar Nautica was used to identify markers associated with resistance in bean chromosome 8 (Pv08) where Co–4 is localized. Three SCAR markers with known linkage to Co–4 and a panel of single nucleotide markers were used for genotyping. A refined physical region on Pv08 with significant association with anthracnose resistance identified by markers was used in BLAST searches with the genomic sequence of common bean accession G19833. Thirty two unique annotated candidate genes were identified that spanned a physical region of 936.46 kb. A majority of the annotated genes identified had functional similarity to leucine rich repeats/receptor like kinase domains. Three annotated genes had similarity to 1, 3-β-glucanase domains. There were sequence similarities between some of the annotated genes found in the study and the genes associated with phosphoinositide-specific phosphilipases C associated with Co-x and the COK–4 loci found in previous studies. It is possible that the Co–4 locus is structured as a group of genes with functional domains dominated by protein tyrosine kinase along with leucine rich repeats/nucleotide binding site, phosphilipases C as well as β-glucanases. 相似文献
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A set of 79 previously mapped bean (Phaseolus vulgaris) genomic (Bng) clones were partially sequenced. BLAST database searches detected homologies between 59 of these clones and genes from a variety of plants, especially Arabidopsis thaliana. Some matches in the database to the Bng clones included a putative P-glycoprotein-ABC transporter from Arabidopsis, an early nodulin-binding protein (ENBPI) from Medicago truncatula, a lon-protease protein from spinach, a branched-chain amino-acid aminotransferase from Arabidopsis, and a vacuolar sorting receptor (BP-80) from Pisum sativum. Additional matches were found for genes involved in isoprenoid biosynthesis, sulfur metabolism, proline biosynthesis, and floral development. Sequence tagged site (STSs) were produced for 16 of the clones, 2 of which contain simple sequence repeats (SSRs). Polymorphisms were detected for six of the STSs. 相似文献
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