Scanning proton microprobe analysis of strontium in an arctic charr,Salvelinus alpinus,otolith: implications for the interpretation of anadromy

Synopsis Scanning proton microprobe imaging has been used to map the distribution of strontium (Sr) in an arctic charr, Salvelinus alpinus, otolith. X-ray maps show that Sr variation follows an oscillatory zoned pattern which correlates with optically resolved zones (annuli). The internal region of the otolith shows optical zonation but no significant Sr content. Comparison of the optical image with the Sr X-ray map provides evidence of when the fish entered a high Sr environment. This may be interpreted as when the fish migrated from fresh water to a marine environment; this particular fish first migrated to sea in its eighth year. Micro-PIXE point analysis was used to determine the abundance of Sr in annuli along a radius from the nucleus to an outer edge; Sr levels in the internal region were about 10 ppm and variation in the outer zoned region was between 62 and 175 ppm. Detection limits for Sr are in the 1–2 ppm range. Other trace elements, such as transition elements, were found to be present in some growth regions in the 1–20 ppm range. Proton beam analysis is a non-destructive analytical technique capable of preserving the spatial integrity of trace-element data in otoliths such that element distribution may be linked to the growth structure of the otolith.     

Chromosomal evolution in naked catfishes (Bagridae,Siluriformes): A comparative chromosome mapping study

We analyzed the distribution of repetitive DNA sequences on the chromosomes of nine species of the Bagridae from Thailand, i.e., Hemibagrus filamentus; H. nemurus; H. wyckii; H. wyckioides; Mystus atrifasciatus; M. multiradiatus; M. mysticetus; M. bocourti and Pseudomystus siamensis. Two classes of microsatellites and one transposable element (TE) were mapped by fluorescence in situ hybridization. The distribution of the repetitive sequences was comparatively analyzed in view to investigate their contribution in the chromosomal evolution of this fish group. In all species the microsatellites (CA)₁₅ and (GA)₁₅ are abundantly distributed in all chromosomes, usually in the telomeric regions. The retrotransposable element Rex 1 is widely distributed over the whole genome including heterochromatin and euchromatin, but with an unexpected accumulation in one chromosome pair in some species. In fact, some species–specific patterns could be observed considering both microsatellites and TE distribution. The results demonstrated that the compartmentalization of repeated elements is not simply restricted to heterochromatic regions, as it has been postulated in the first concepts of the genomic organization of repetitive elements in genomes. Moreover, the organization of these repeats seems to reflect their intense and specific evolutionary pathway, providing new insights about the chromosomal evolution in the Bagridae.     

闽南-台湾浅滩渔场二长棘鲷群体景观多样性

根据1998年7月到2000年6月闽南-台湾浅滩渔场开展二长棘鲷资源的专项调查资料,以各个渔区CPUE(Catch Per Unit Effort)及其到渔场重心距离为参数,构建基于渔场重心动能的景观要素,运用景观多样性,并结合因子分析,分析了二长棘鲷群体景观多样性的空间格局及其与海洋环境因子之间的关系,探究了种群空间分布格局与生态过程之间的相互作用关系,旨在揭示闽南-台湾浅滩渔场二长棘鲷的生态境况及空间变异特征,为从生态水平上合理综合利用二长棘鲷渔业资源提供新的依据。结果表明:(1)不同月份鱼群的分布特征差别明显,8月鱼群分布范围最广,11月鱼群分布最为均匀,2月和12月鱼群分布最集中,而9月鱼群占据渔场空间能力最强;(2)不同群体之间具有不同分布特征,生殖群体分布范围最小,且最集中,其占据渔场空间能力最弱,幼鱼群体分布范围小,且相对均匀,其占据渔场空间能力强,索饵群体分布范围最广,且较均匀,鱼群分散索饵,其占据渔场空间能力最强,而9—11月群体平均分布范围较广,且最均匀,其占据渔场空间能力较弱;(3)鱼群综合景观指数是具空间结构的CPUE指数,从生态水平上反映了鱼群CPUE,其排名依次为8月、6月、7月、9月、10月、11月、5月、1月、4月、3月、2月、12月;(4)多样性指数、均匀度指数和优势度指数指示的生态学意义分别为鱼群的分布范围、均匀程度和鱼群空间竞争能力,其中多样性指数和均匀度指数呈正相关;(5)水温是影响鱼群景观均匀度的主要因子,索饵是增加鱼群景观多样性和优势度的主要因子,而生殖因子则降低鱼群景观多样性和优势度,水温、索饵和生殖是二长棘鲷群体景观格局变化的主要驱动因素。     

Cloning and characterization of Tc1 family-derived PPTN related transposons from ridged-eye flounder (Pleuronichthys cornutus) and inshore hagfish (Eptatretus burgeri)

The Tc1 transposable element is the most widespread family among animal transposon and these elements consist of an inverted repeat (IR) sequence flanking a transposase gene that belongs to Class II type transposon, which is highly conserved in the genome of the nematode C. elegans. In order to characterize Tc1-like transposable elements from several fishes, PPTN (Tc1-like transposon was isolated from Pleuronectes platessa, marine flatfish species) IR primer-specific amplified elements were cloned from the genomic DNA of several fishes. Transposable elements were found in ridged-eye flounder (Pleuronichthys cornutus) and inshore hagfish (Eptatretus burgeri) and named as PCTN and EBTN, respectively. Amino acid sequence alignment and phylogenetic analysis confirmed that the PPTN-like transposons belonged to the Tc1 superfamily of transposons, but they comprised a unique clade of Tc1-like transposons. The IR-PCR analysis using MMTS-IR and PPTN-IR specific primers from Paralichthys olivaceus (Paralichthyidae), Paraplagusia japonica (Cynoglossidae), P. yokohamae (Pleuronectidae) and Pagurus cornutus (Pleuronectidae) (within the same order, Pleuronectiformes but different families) exhibited mutually exclusive distribution of Tc1 family-derived PPTN and MMTS-like transposons in these fish genomes. These results indicate that Tc1 family-derived PPTN and MMTS related Tc1-like transposable elements have uniquely evolved in piscine genome, and can be used as phylogenetic markers for the distribution of subfamilies of Tc1-like transposon and the involvement of horizontal and vertical transmission in the evolution of fish genome.     

A Fish Assemblage from the Middle Eocene from Libya (Dur At-Talah) and the Earliest Record of Modern African Fish Genera

In the early nineteen sixties, Arambourg and Magnier found some freshwater fish (i.e., Polypterus sp., Siluriformes indet. and Lates sp.) mixed with marine members in an Eocene vertebrate assemblage at Gebel Coquin, in the southern Libyan Desert. This locality, aged ca 37–39Ma and now known under the name of Dur At-Talah, has been recently excavated. A new fish assemblage, mostly composed of teeth, was collected by the Mission Paléontologique Franco-Libyenne. In this paper, we describe freshwater fish members including a dipnoan (Protopterus sp.), and several actinopterygians: bichir (Polypterus sp.), aba fish (Gymnarchus sp.), several catfishes (Chrysichthys sp. and a mochokid indet.), several characiforms (including the tiger fish Hydrocynus sp., and one or two alestin-like fish), and perciforms (including the snake-head fish Parachanna sp. and at least one cichlid). Together with the fossiliferous outcrops at Birket Qarun in Egypt, the Libyan site at Dur At-Talah reduces a 10-Ma chronological gap in the fossil record of African freshwater fish. Their fish assemblages overlap in their composition and thus constitute a rather homogenous, original and significant amount of new elements regarding the Paleogene African ichthyofauna. This supports the establishment of the modern African freshwater fish fauna during this time period because these sites mostly contain the earliest members known in modern genera.     

嘉陵江8种鱼类不同组织微量元素含量分析

测定了黄颡鱼（Pelteobagrus fulvidraco）、中华倒刺钯（Spinibarbus sinensis）、大鳍鲠（Mystus macropterus）、长吻鲍（Leiocassis longirostris）、大眼鳜（Siniperca kneri）、小口鲇（Silurus asotus）、岩原鲤（Procypris rabaudi）和圆口铜鱼（Coreius guichenoti）8种嘉陵江名贵鱼不同组织微量元素含量及肌肉和脑中Ca、P含量,结果表明,鱼脑中各类矿物质元素显著高于肌肉;肌肉5种微量元素总量由低到高依次为：圆口铜鱼、中华倒刺鳃、长吻鲍、大鳍鲮、黄颡鱼、大眼鳜、岩原鲤、小口鲇;而脑由低到高依次为：大眼鳜、岩原鲤、小口鲇、圆口铜鱼、大鳍鲢、中华倒刺鳃、长吻鲍、黄颡鱼。微量元素在各内脏器官的分布：铁和铜以肝（胰）脏最高,肾脏其次,胃肠最低;锰和锌的含量肾脏〉肝（胰）脏〉胃肠;镁的分布各种鱼差异较大。     

Visual observations of fish at the Whale Ridge (Atlantic Ocean) from the Sever-2 manned underwater vehicle

Research trawling surveys and visual observations aboard manned underwater vehicles carried out at Whale Ridge revealed 116 species of bottom, near-bottom, over-bottom, and over-bottom-pelagic fish of 46 families. The data on the distribution, number, and behavior, along with some data on biology of the mass fish species, are given in the present paper. The following species prevail by number and biomass: splendid alfonsino Beryx splendens; boarfish Pseudopentaceros richardsoni; redbait Emmelichthys nitidus; flintperch Hoplostethus atlanticus; Helicolenus mouchezi; and fish of families Gempylidae, Oreosomatidae, Macrouridae, Moridae, Alepocephalidae, etc. All these species are subject to fisheries but the boarfish and alfonsino are most commercially important.     

Characterization of a Tc1-like transposable element in zebrafish (Danio rerio)

We have characterized Tdr1, a family of Tc1-like transposable elements found in the genome of zebrafish (Danio rerio). The copy number and distribution of the sequence in the zebrafish genome have been determined, and by these criteria Tdr1 can be classified as a moderately repetitive, interspersed element. Examination of the sequences and structures of several copies of Tdr1 revealed that a particular deletion derivative, 1250 by long, of the transposon has been amplified to become the dominant form of Tdr1. The deletion in these elements encompasses sequences encoding the N-terminal portion of the putative Tdr1 transposase. Sequences corresponding to the deleted region were also detected, and thus allowed prediction of the nucleotide sequence of a hypothetical full-length element. Well conserved segments of Tc1-like transposons were found in the flanking regions of known fish genes, suggesting that these elements have a long evolutionary history in piscine genomes. Tdr1 elements have long, 208 by inverted repeats, with a short DNA motif repeated four times at the termini of the inverted repeats. Although different from that of the prototype C. elegans transposon Tc1, this inverted repeat structure is shared by transposable elements from salmonid fish species and two Drosophila species. We propose that these transposons form a subgroup within the Tc1-like family. Comparison of Tc1-like transposons supports the hypothesis that the transposase genes and their flanking sequences have been shaped by independent evolutionary constraints. Although Tc1-like sequences are present in the genomes of several strains of zebrafish and in salmonid fishes, these sequences are not conserved in the genus Danio, thus raising the possibility that these elements can be exploited for gene tagging and genome mapping.     

An evaluation of the use of branching fire-corals (Millepora spp.) as refuge by reef fish in the Abrolhos Bank, eastern Brazil

Branching scleractinians provide fish with critical refuge against predation. While in the Caribbean and Indo-Pacific regions they are conspicuous elements of the reef community, in the tropical Southwestern Atlantic (Brazil) branching corals are lacking and massive forms dominate. The only branching forms that occur in Brazil are stinging fire-corals of genus Millepora (Hydrozoa). Preliminary observations showed that several fish species seek refuge within fire-corals in Brazil, suggesting that they may replace the functional role played by scleractinians in other regions. Here, the association of fishes to individual fire-coral colonies (Millepora alcicornis and M. brasiliensis) and the relationship between fire-coral cover and fish abundance was studied in eastern Brazil. A total of 38 fish species from 18 families (37?% of the regional species pool) were recorded within fire-corals. Most records were of relatively small-bodied fishes and juveniles of large-bodied fishes. Comparative observations between day and night indicated that fire-corals are used as sleeping sites by a few species. Volume of colonies was positively correlated with fish abundance and species richness. Over a large spatial scale (tens of kilometers) fire-coral cover had a positive and significant influence on the abundance of three fish species only (Abudefduf saxatilis, Acanthurus coeruleus and Microspatodon chrysurus). Although physical attributes of colonies and fire-coral cover may help to account for some of the spatial variability in fish abundance, fire-corals may be considered as an alternative instead of a critical microhabitat for fish. The advantages and drawbacks of living in a branching and stinging environment are discussed.     

The fish zonation of the Itanhaém river basin in the Atlantic Forest of southeast Brazil

The distribution range of fishes along an upstream–downstream gradient within a river basin is determined by the ecological requirements of each fish species. This differential pattern of distribution may suggest the occurrence of fish zones, where different functional guilds would prevail. The earliest concept of fish zonation highlighted the preferential position of several species in European rivers. Nowadays, there is a consensus that for a broad application of this concept, it is necessary to consider the division in functional groups along the downstream profile as related to reproductive, feed and population dynamics traits. However, for a number of tropical systems, such information does not exist. In this case, it is possible to use the fish family as a surrogate metric, by assuming that it fully covers common aspects of morphology, feeding, and behavior. Using this surrogate metric, we analyzed the distribution range of fish species along an elevation gradient in a typical Atlantic Forest basin in southeast Brazil. Our objective was to delimit fish zones based on the representativeness of some dominant fish families. Between 2006 and 2008, we sampled 42 sites from the estuary to the headwater creeks in elevations that varied from 3 to 783 m. The data were explored using the species (or family) occurrence, relative numerical abundance (N′), relative biomass (B′), and the importance index (IP). We applied the non-metric multidimensional scaling (NMDS) to ordinate the sampling sites using the Jaccard distance calculated on the species occurrence matrix. Data on family importance were superimposed to the NMDS to check how the distribution and the abundance of the families were correlated to the ordination. We caught 64 species distributed among 25 fish families. Based on the dominance of some families, we propose that the fish assemblage in the Itanhaém river basin can be organized in four fish zones (FZ) and three transitory zones (TZ), which replace each other along the longitudinal gradient. The marine/estuarine fishes dominated in FZ1 and TZ1. The freshwater fishes were dominated by Characidae (FZ2), Heptapteridae (FZ3), and Gymnotidae (FZ4). TZ2 was equally dominated by Characidae, Loricariidae, and Heptapteridae. The distinct assemblage composition along the FZ’s may relate to complex interactions involving seasonal patterns of variation in salinity levels (next to estuary), slope, presence of downstream barriers, and availability of food resources. We expect that the patterns observed in our study will also be presented in other coastal Atlantic Forest basins in Southeast Brazil.     

Chromosomal organization of repetitive DNA sequences in Astyanax bockmanni (Teleostei, Characiformes): dispersive location, association and co-localization in the genome

Repetitive DNA sequences constitute a great portion of the genome of eukaryotes and are considered key components to comprehend evolutionary mechanisms and karyotypic differentiation. Aiming to contribute to the knowledge of chromosome structure and organization of some repetitive DNA classes in the fish genome, chromosomes of two allopatric populations of Astyanax bockmanni were analyzed using classic cytogenetics techniques and fluorescent in situ hybridization, with probes for ribosomal DNA sequences, histone DNA and transposable elements. These Astyanax populations showed the same diploid number (2n = 50), however with differences in chromosome morphology, distribution of constitutive heterochromatin, and location of 18S rDNA and retroelement Rex3 sites. In contrast, sites for 5S rDNA and H1, H3 and H4 histones showed to be co-located and highly conserved. Our results indicate that dispersion and variability of 18S rDNA and heterochromatin sites are not associated with macro rearrangements in the chromosome structure of these populations. Similarly, distinct evolutionary mechanisms would act upon histone genes and 5S rDNA, contributing to chromosomal association and co-location of these sequences. Data obtained indicate that distinct mechanisms drive the spreading of repetitive DNAs in the genome of A. bockmanni. Also, mobile elements may account for the polymorphism of the major rDNA sites and heterochromatin in this genus.     

Phylogenomics of the Maverick Virus-Like Mobile Genetic Elements of Vertebrates

Mavericks are virus-like mobile genetic elements found in the genomes of eukaryotes. Although Mavericks encode capsid morphogenesis homologs, their viral particles have not been observed. Here, we provide new evidence supporting the viral nature of Mavericks and the potential existence of virions. To this end, we conducted a phylogenomic analysis of Mavericks in hundreds of vertebrate genomes, discovering 134 elements with an intact coding capacity in 17 host species. We reveal an extensive genomic fossil record in 143 species and date three groups of elements to the Late Cretaceous. Bayesian phylogenetic analysis using genomic fossil orthologs suggests that Mavericks have infected osteichthyans for ∼419 My. They have undergone frequent cross-species transmissions in cyprinid fish and all core genes are subject to strong purifying selection. We conclude that vertebrate Mavericks form an ancient lineage of aquatic dsDNA viruses which are probably still functional in some vertebrate lineages.     

Does dietary arsenic and mercury affect cutaneous bleeding time and blood lipids in humans?

Fish species may contain considerable amounts of trace elements, such as selenium (Se), arsenic (As), and mercury (Hg). The present study investigated the relationships between dietary intake of these elements and cutaneous bleeding time and blood lipids in 32 healthy volunteers. For 6 wk, one group (n=11) consumed approx 250 g Se-rich fish daily, providing them with an average Se intake of 115±31 μg Se/d, Hg intake of 18±8 μg/d, and As intake of 806±405 μg/d, all values analyzed in 4-d duplicate food collections. To study the effect of Se alone, one group (n=11) included Se-rich bread in their normal diet, giving them a Se intake (135±25 μg/d) that was comparable to the fish group. A control group (n=10) ate their normal diet, providing 77±25 gmg Se/d, 3.1±2.5 μg Hg/d, and 101±33 μg As/d. The dietary As load strongly correlated both with bleeding times and changes in bleeding times (r=0.48,p<0.01 andr=0.54,p<0.002, respectively). Dietary Hg showed a positive correlation with LDL-cholesterol (r=0.55,p<0.01), whereas dietary Hg in the fish group showed a strong negative relationship with HDL-cholesterol (r=?0.76,p<0.01). Selenium seemed to have only a modest effect on bleeding time. Our results suggest that mercury and arsenic from fish may be factors contributing to or modifying some of the known effects of fish ingestion.     

Unterschiede im revier- und sexualverhalten endemisch-anatolischer zahnkarpfen (pisces,cyprinodontidae)

The endemic Anatolian cyprinodonts Aphanius chantrei, A. (Kosswigichtys) asquamatus, and A. anatoliae show definite interspecific differences in their territorial and sexual behaviour under laboratory conditions. Intraspecific differences were found in the nine populations of A. anatoliae investigated.A. chantrei and Kosswigichthys show almost the same territorial behaviour. In A. anatoliae territoriality is found in three populations; the remaining six populations show no territoriality.The sexual behaviour consists of visual display elements and of elements which enable the fish to keep close contact without actually touching each other. The sequence of elements can be variable. Only two populations of A. anatoliae have retained display elements; the remaining seven populations have lost all of them.A correlation is discussed between biotope conditions and sexual behaviour. Display and territorial behaviour may have become superfluous in extreme, sulphate-containing habitats, where a lack of flora has led to a lack of spawning sites. Under changing breeding conditions the newly evolved element with fish staying close together (male underneath the female) may have replaced the former display elements.     

Chromosome localization and characterization of a family of long interspersed repetitive DNA elements from the genus Zea

This paper describes the characterization and chromosomal distribution of new long repetitive sequences present in all species of the genus Zea. These sequences constitute a family of moderately repetitive elements ranging approximately from 1350 to 1700 copies per haploid genome in modern maize (Zea mays ssp. mays) and teosinte (Zea diploperennis), respectively. The elements are long, probably larger than 9 kb, and they show a highly conserved internal organization among Zea subspecies and species. The elements are present in all maize chromosomes in an interspersed pattern of distribution, are absent from centromeric and pericentric heterochromatin, and with some clustering in the distal regions of chromosome arms.     

Fish granulocytes: Morphology,distribution, and function

In the last 20 years interest in fish granulocyte identification, distribution, and function has burgeoned, as evidenced by the increasing number of reports in scientific literature. Neutrophils, eosinophils, and basophils are present in peripheral blood and certain organs of fish. Some species of fish have all three cell types, while other species may only possess one cell type. Granulopoiesis in fish occurs in the spleen, kidneys, epigonal organ, organ of Leydig, and other specialized tissue, with the specific locations depending on the species. In some fish, neutrophils are actively phagocytic. In vitro assays indicate phagocytosis, mobilization in response to chemotaxins, detectable chemiluminescence, and an active respiratory burst when appropriately stimulated. In fish species without neutrophils, the eosinophil may be responsible for phagocytosis. Eosinophils also function in antiparasite immunity in certain species. Basophil function has not been investigated. Responses of fish neutrophils and eosinophils can be altered by season of the year, environmental pollutants, disease, and others stressors. Differences among fish species in type, cellular distribution, and function of granulocytes are the focus of this review.     

Flexible seaward migration of Dolly Varden <Emphasis Type="Italic">Salvelinus malma</Emphasis> in the Shiretoko Peninsula,Hokkaido, Japan

The migratory history of Dolly Varden Salvelinus malma was investigated in 30 streams in the Shiretoko Peninsula, Hokkaido, Japan, which is in the southern part of their distribution. Captured Dolly Varden were classified into two categories by their body coloration: silvery fish were thought to be an anadromous form, and non-silvery fish a fluvial form that remains in freshwater throughout its life. Forty-seven of 1,739 Dolly Varden collected in the spring and ten of 2,126 Dolly Varden collected in the autumn were silvery fish. Twenty silvery fish and 120 non-silvery fish were examined by analysis of otolith Sr:Ca ratio. Three silvery fish from autumn and 15 non-silvery fish had migrated to salt water or brackish water. The other specimens of silvery fish were regarded as smolt or pre-smolt before seaward migration. The present study suggests that Dolly Varden in the Shiretoko Peninsula have a flexible migratory history, where some of the non-silvery fish utilize marine environments while some individuals follow an anadromous life history.     

Potential negative effects and heterogeneous distribution of a parasitic copepod Salmincola edwardsii (Copepoda: Lernaeopodidae) on Southern Asian Dolly Varden Salvelinus curilus in Hokkaido,Japan

The genus Salmincola is an ectoparasitic copepod group commonly infesting the branchial and buccal cavities of salmonids. While negative impacts on hatchery fishes have been reported, their impacts on wild fish populations and distribution patterns are critically understudied. In the Shiretoko Peninsula, Hokkaido, Japan, we found parasites belonging to this genus on the branchial cavity of a stream salmonid, Southern Asian Dolly Varden Salvelinus curilus. All parasites recovered were identified as Salmincola edwardsii based on morphological characteristics and partial 28S rDNA sequences. Prevalence was highly heterogeneous even among neighboring streams (0–54.8%, < 10 km) with the mean intensity among streams being generally low (2.19 parasites/infeted fish). Despite the low intensity, quantile regression analysis showed negative trends between parasite intensity and host condition, suggesting that the infestation of S. edwardsii has a potential negative impact on the host salmonid. In addition, a single copepod was found from an anadromous fish, which could indicate some salinity tolerance of the copepods. It is important to evaluate the effects of Salmincola spp. on host species and determine the limiting factors on the parasite's distribution for proper management.     

The fish Perccottus glenii: history of introduction to western regions of Eurasia

The fish,Perccottus glenii, appeared in western regions of Eurasia in 1916 and has several centres of invasion. Ways of distribution are discussed. Uncontrolled distribution of this fish leads to significant negative changing of freshwater ecosystems.