Untangling the roles of fire,grazing and rainfall on small mammal communities in grassland ecosystems

In grassland systems across the globe, ecologists have been attempting to understand the complex role of fire, grazing and rainfall in creating habitat heterogeneity and the consequences of anthropogenic control of these factors on ecosystem integrity and functioning. Using a South African grassland ecosystem as a model, we investigated the impact of fire and grazing pressure on small mammal communities during three differing periods of a rainfall cycle. Over 2 years, 15,203 trap nights revealed 1598 captures of 11 species (nine rodents, one macroscelid and one insectivore). Results highlighted the importance of the interplay between factors and showed that the role of fire, grazing and rainfall in determining small mammal abundance was species-dependant. While no two species were affected by the same environmental variables, grass cover or height was important to 56% of species. Considered independently, high rainfall had a positive influence on small mammal abundance and diversity, although the lag period in population response was species-specific. High grazing negatively affected overall abundance, but specifically in Mastomys coucha; fire alone had little immediate impact on small mammal diversity. Six months after the fire, vegetation cover had recovered to similar levels as unburned areas, although small mammal diversity and richness were higher in burned areas than unburned areas. Grazing levels influenced the rate of vegetation recovery. In conclusion, low-level grazing and burning can help to maintain small mammal biodiversity, if conducted under appropriate rainfall levels. A too high grazing pressure, combined with fire, and/or fire conducted under drought conditions can have a negative impact on small mammal biodiversity. To maintain small mammal diversity in grassland ecosystems, the combined effects of the previous year’s rainfall and existing population level as well as the inhibition of vegetation recovery via grazing pressure need to be taken into consideration before fire management is applied. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Relationships between livestock grazing intensity and mammal predator-prey: A study case in Copo National Park in the dry Chaco forests

Extensive livestock ranching is one of the main drivers of habitat degradation in terrestrial communities in the dry Chaco forest (Argentina). Grazing intensity could differentially affect native mammals and their interactions, which could impact both, native mammal communities and livestock production systems. Here, we determined how the activity index of grey foxes Lycalopex gymnocercus and capture abundance and richness of small mammals vary along a grazing intensity gradient in a particular region of the dry Chaco forest (Copo National Park, Argentina). Track plots were used to estimate the activity index of foxes and cattle, and Sherman traps for small mammals. Fresh scats were collected to analyse the diet of foxes and to assess possible changes in predator-prey dynamics. Fruit availability and shrub density were measured in 6 plots of 2 m × 50 m. We used generalized linear mixed models, Spearman’s nonparametric rank correlation, Chi-squared test, and Spearman’s partial correlation coefficient to analyse the potential effects of grazing intensity. We found that the activity index of foxes increased (0.06 ± 0.018) while small mammal abundance (-0.08 ± 0.024) and species richness decreased (r_s = -0.94) with increasing grazing intensity. However, the proportion of scats with mammalian remains decreased with increasing grazing intensity. Also, we did not find a strong partial correlation between foxes and small mammals when we controlled for grazing intensity. This suggests that the abundance and diversity of small mammals in the study area are determined more by grazing intensity than by predator-prey interactions. Grazing intensity could negatively affect small mammals, but not through changes in fruit availability or shrub density, but possibly by affecting grass cover. Consequently, foxes’ activity could increase to meet caloric intake requirements. Our results suggest that specific cattle management recommendations depend on the wildlife species that serves as a conservation target. We recommend testing whether reducing cattle load can make this productive activity compatible with wildlife conservation in dry Chaco forests.     

Long-term grazing impacts on vegetation diversity,composition, and exotic species presence across an aridity gradient in northern temperate grasslands

Little is known about the specific role of exotic species on measures of grassland plant diversity, including how this may vary with climatic conditions or large mammal herbivory. This study examined vegetation responses to long-term livestock grazing, including plant richness and diversity, as well as the contribution of exotic species to these metrics, across a network of 107 northern temperate grasslands in Alberta, Canada, spanning a broad aridity gradient. Exposure to grazing modestly increased plant richness, but did not alter Shannon’s diversity, Simpson’s diversity, or evenness, suggesting stability in floral diversity relative to grazing. However, grazing did increase grass cover while reducing shrub cover, the latter of which was only apparent in mesic grasslands. Unlike total plant diversity, exotic species richness and cover, together with exotic plant contributions to diversity, varied jointly with grazing and aridity. While long-term grazing increased exotic species, this response was most apparent in wetter areas, and non-grazed grasslands remained more resistant to the presence of exotics. Several exotic species were positive indicators of grazing in wetter grasslands, and coincided with lower native species cover, indicating grazing may be facilitating a shift from native to exotic vegetation under these conditions. Overall, our results indicate that while long-term grazing has altered the composition and cover of certain functional groups, including favoring exotics and minimizing woody vegetation in mesic areas, overall changes to plant diversity were limited. Additionally, these findings suggest that semi-arid northern temperate grasslands remain relatively resistant to grazing effects, including their susceptibility to exotic plant encroachment. These results improve our understanding of how ongoing grazing exposure may impact grassland diversity, including efforts to conserve native vegetation, as well as the important role of climate in altering fundamental grassland responses to grazing.     

Termites, Large Herbivores, and Herbaceous Plant Dominance Structure Small Mammal Communities in Savannahs

Large herbivores and termites are important functional groups in African savannahs. Both groups affect small mammals, which are also important determinants for savannah structure and function. Because vegetation on Macrotermes mounds are preferentially grazed by large herbivores, and mounds represent resource-rich distinct habitat patches for small mammals in relatively resource-poor savannahs, termite mounds are ideal sites for studies of how grazing by large mammals and productivity affect communities of small mammals. We conducted an experiment in Lake Mburo National Park, Uganda, with four treatments: large vegetated Macrotermes mounds (with and without large herbivores) and adjacent savannah areas (with and without large herbivores). We replicated the treatment blocks nine times and trapped small mammals regularly over a period of almost 2 years. Small mammal species assemblages differed considerably between mounds and savannah areas. Grazing had a substantial effect on small mammal species assemblages in the resource-poor savannah, but not in the relatively resource-rich termitaria. Small mammal species abundance, biomass, and richness were higher on termite mounds than adjacent savannah areas. Excluding large herbivores caused a major increase in species abundance, biomass, and richness both on savannah and termitaria. Herbaceous plant species evenness was an important determinant of the small mammal community. Small mammal biomass increased with high plant dominance, indicating that a few dominant plant species are important for biomass production of small mammals. Small mammal diversity was not related to any of the treatments, but increased with plant species evenness as well as richness. Fencing increased species dominance in the small mammal community on both savannah and termitaria, probably because competitive patterns shift from inter-guild (that is, between large and small mammals) to intra-guild (that is, between small mammals) when large mammals are excluded. The study highlights the complex interactions among large herbivores, termites, herbaceous plants, and small mammals in African savannahs. When studying the structure and function of small mammal communities it is therefore important to consider several coexisting functional groups.     

The impact of beech thickets on biodiversity

Beech bark disease has dramatically altered hardwood forest structure and composition across northeastern North America. Extensive overstory mortality has resulted in prolific root-sprouting in some stands leading to the development of understory thickets of clonal small-stemmed beech. Beech thickets may impact local forest biodiversity, but this has not been adequately evaluated. We hypothesized significant differences in diversity of groundcover flora, craneflies, amphibians, and small mammals between plots with and without beech thickets. Paired plots were established in uneven-aged northern hardwood forest stands with no recent management history at two sites in the Adirondack Mountains of New York State. Groundcover plants, terrestrial craneflies, amphibians and small mammals were sampled on twenty paired plots. Discriminant analysis showed a significant difference between thicket and non-thicket (control) areas; significant variables in plot type separation were beech sapling abundance, leaf litter depth, and coarse woody debris volume. Groundcover plant cover, richness, and diversity were significantly lower in thicket compared to non-thicket plots, while beech sapling density explained 17–38 % in groundcover plant species diversity. There were no significant differences between the diversity of cranefly, amphibian and small mammal communities of each plot type. Beech thickets are important determinants of local biodiversity.     

Landscape Management of Fire and Grazing Regimes Alters the Fine-Scale Habitat Utilisation by Feral Cats

Intensification of fires and grazing by large herbivores has caused population declines in small vertebrates in many ecosystems worldwide. Impacts are rarely direct, and usually appear driven via indirect pathways, such as changes to predator-prey dynamics. Fire events and grazing may improve habitat and/or hunting success for the predators of small mammals, however, such impacts have not been documented. To test for such an interaction, we investigated fine-scale habitat selection by feral cats in relation to fire, grazing and small-mammal abundance. Our study was conducted in north-western Australia, where small mammal populations are sensitive to changes in fire and grazing management. We deployed GPS collars on 32 cats in landscapes with contrasting fire and grazing treatments. Fine-scale habitat selection was determined using discrete choice modelling of cat movements. We found that cats selected areas with open grass cover, including heavily-grazed areas. They strongly selected for areas recently burnt by intense fires, but only in habitats that typically support high abundance of small mammals. Intense fires and grazing by introduced herbivores created conditions that are favoured by cats, probably because their hunting success is improved. This mechanism could explain why, in northern Australia, impacts of feral cats on small mammals might have increased. Our results suggest the impact of feral cats could be reduced in most ecosystems by maximising grass cover, minimising the incidence of intense fires, and reducing grazing by large herbivores.     

Cattle grazing, raptor abundance and small mammal communities in Mediterranean grasslands

Abundance and diversity of small mammals are usually affected strongly by grazing either due to decreased food availability or quality, decreased suitability of soil for building burrow systems due to trampling and/or due to increased predation risk in the structurally simpler grazed areas. We estimated the effects of grazing-induced changes in vegetation and soil and of increased predation on small mammals in a Mediterranean grassland landscape. We measured vegetation structure, soil compaction and small mammal abundance and species composition in 22 plots of 8 Sherman live traps each, arranged according to an unbalanced two-way ANOVA design with two grazing levels (grazed areas and cattle exclosures) and two predator abundance levels (increased densities of Eurasian kestrels Falco tinnunculus by means of nest boxes and control). Plots were sampled during 2 consecutive years in early summer and early fall. Exclosure from cattle increased significantly vegetation height and volume and decreased soil compaction. Grazing-induced changes in vegetation height and volume and in soil compaction produced strong effects on small mammal abundance and species richness. Increased kestrel densities did not have significant additive or interactive effects, with the effects of grazing-induced vegetation and soil gradients on abundance or richness of small mammals. Our results suggest that the effects of grazing on small mammal communities in Mediterranean montane grasslands were mainly due to reduced food availability and by negative effects of trampling on the suitability of soils for building burrow systems. Decreased food quality and increased predation in grazed areas seemed to play a minor role, if any. Reductions in stock densities would then favor generalist predator populations in Mediterranean grasslands through the expected positive effects of such reductions on the availability of food and burrows for small mammals.     

Vegetation, ungulate and grasshopper interactions inside vs. outside an African savanna game park

The human impact on the African savanna is parcelling large native mammals into game reserves, with cattle and other livestock replacing these native mammals in the matrix surrounding these reserves. Concordant with this are other landscape changes such as fire maintenance within the reserve but no longer outside. How does this composite landscape change affect biodiversity, as represented by small animals such as grasshoppers? This question was addressed against the premise that grasshoppers have evolved in the context of native mammal ecology. One of the most significant aspects of this ecology is grazing and trampling by the large number of ungulates congregating at waterholes. The results clearly show that the grasshopper fauna is only marginally impoverished outside the reserve, and that cattle trampling and grazing (along with less fire) is a simulation of these impacts by native ungulates. As greatest grasshopper diversity is encouraged by some trampling and grazing, the presence of cattle in place of native mammals is not entirely adverse to biodiversity, as represented by grasshoppers.     

放牧压力条件下荒漠草原小型哺乳动物群落多样性的空间格局

在植物生长期 ,采用夹日法对放牧扰动下的祁连山北坡山地荒漠草地小型哺乳动物群落多样性空间分布格局进行测度 ,结果表明 :在不同的放牧强度条件下 ,小型哺乳动物群落物种组成、结构和多样性指数受相应影响 ,物种丰富度和多样性指数随放牧压力增加而减小 ,经 Whittaker的相似性指数的聚类分析 ,在相似性指数大于 0 .4的水平上 ,可把研究区小型哺乳动物群落分为被家畜啃食和未被家畜啃食 2个类群。研究结果进一步验证了大型食草动物放牧干扰对改变小型哺乳动物群落结构具有重要作用的假设     

Small mammal herbivores mediate the effects of soil nitrogen and invertebrate herbivores on grassland diversity

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Factors Affecting the Small Mammal Community Inside and Outside Katavi National Park, Tanzania1

Small mammal trapping showed that a minimum of 12 species live in and around Katavi National Park in western Tanzania. Species richness and abundance were greater outside the park than inside, extending results of an earlier study. Species richness and abundance were not significantly associated with vegetation cover or plant biomass but were negatively correlated with seed diversity, seed biomass, and possibly small carnivore abundance. Unfortunately, small mammal diets are unknown in this ecosystem and it can be argued that carnivores are unlikely to reduce species diversity, casting doubt on the importance of these variables. While the factors causing small mammals to fare poorly in this protected area are not yet understood, reduced food availability remains the best candidate.     

Cape ground squirrels as ecosystem engineers: modifying habitat for plants,small mammals and beetles in Namib Desert grasslands

Burrowing and foraging of semi‐fossorial rodents can affect species distribution and composition. Ground squirrels dig large burrow systems for refuge from predators and temperature extremes. Burrowing and foraging around burrows by squirrels may affect habitat and resource distributions for other organisms. We examined the impact of Cape ground squirrels (Xerus inauris) on vegetation, small mammals and beetles during winter and summer in grasslands on the edge of the Namib Desert. At each burrow system and paired control site without burrows, we estimated plant cover and height using quadrats (N = 8 paired sites), small mammal abundance and species richness using mark‐recapture techniques (N = 8 paired sites) and beetle abundance and species richness using pitfall traps (N = 6 paired sites, winter only). Squirrel burrowing and foraging activities resulted in lower plant cover and height, higher small mammal abundance and lower beetle abundance and species richness. Squirrels also reduced more plant cover in winter compared to summer, but had no effect on small mammal species richness. Furthermore, plant cover and height were higher in summer, whereas small mammal abundance and species richness were higher in winter. Our results suggest that Cape ground squirrels are important ecosystem engineers that influence plant and animal communities in the Namib Desert grasslands.     

Intraspecific variation overrides origin effects in impacts of litter-derived secondary compounds on larval amphibians

Vertebrate herbivores can be key determinants of grassland plant species richness, although the magnitude of their effects can largely depend on ecosystem and herbivore characteristics. It has been demonstrated that the combined effect of primary productivity and body size is critical when assessing the impact of herbivores on plant richness of perennial-dominated grasslands; however, the interaction of site productivity and herbivore size as determinants of plant richness in annual-dominated pastures remains unknown. We experimentally partitioned primary productivity and herbivore body size (sheep and wild rabbits) to study the effect of herbivores on the plant species richness of a Mediterranean semiarid annual plant community in central Spain over six years. We also analyzed the effect of grazing and productivity on the evenness and species composition of the plant community, and green cover, litter, and plant height. We found that plant richness was higher where the large herbivore was present at high-productivity sites but barely changed at low productivity. The small herbivore did not affect species richness at either productivity site despite its large effects on species composition. We propose that adaptations to resource scarcity and herbivory prevented plant richness changes at low-productivity sites, whereas litter accumulation in the absence of herbivores decreased plant richness at high productivity. Our results are consistent with predictions arising from a long history of grazing and highlight the importance of both large and small herbivores to the maintenance of plant diversity of Mediterranean annual-dominated pastures.     

Defaunation and fragmentation erode small mammal diversity dimensions in tropical forests

Forest fragmentation and defaunation are considered the main drivers of biodiversity loss, yet the synergistic effects of landscape changes and biotic interactions on assemblage structure have been poorly investigated. Here, we use an extensive dataset of 283 assemblages and 105 species of small mammals to understand how defaunation of medium and large mammals and forest fragmentation change the community composition and diversity of rodents and marsupials in tropical forests of South America. We used structured equation models to investigate the relationship between small mammal species, functional and phylogenetic diversity with forest size, forest cover and the occurrence of medium and large mammals. The best‐fit model showed that defaunation reduced functional diversity, and that species diversity of small mammals increased with forest patch size. Forest cover did not affect functional and phylogenetic diversity. Our results indicate that occurrence of medium and large sized mammals (probably acting as predators, or competitors of small mammals) and forest patch size help to retain species and functional diversity in small mammal communities. Further, the number of species in a small mammal community was critical to the maintenance of phylogenetic diversity, and may have a pronounced influence on the ecological functions played by small mammals. Identifying how phylogenetic and functional diversity change in function of human pressures allows us to better understand the contribution of extant lineages to ecosystem functioning in tropical forests.     

Relative impacts of cattle grazing and feral animals on an Australian arid zone reptile and small mammal assemblage

The effect of different levels of cattle grazing on an arid Australian small terrestrial mammal and lizard assemblage was assessed in a long‐tem series of cross‐fence comparisons. Cross‐fenced sites were closely matched for edaphic and vegetation characteristics and experienced near identical weather patterns, to ensure that cattle grazing pressure was the principal determinant of any differences in fauna assemblages. In addition, the effects of removal of cattle, cats, foxes and rabbits from three of these long‐term monitoring sites were assessed to determine the relative impacts of cattle grazing and feral animals. Small mammal captures, with the exception of Mus musculus, revealed a significant negative response to cattle grazing pressure but this response was of a considerably lower magnitude than the dramatic increase in rodent captures and species richness within the feral animal‐proof Arid Recovery Reserve. Higher kangaroo numbers in ungrazed controls, compared with treatments grazed by cattle, possibly negated the benefits to small mammals of removing cattle grazing. No reptile species responded significantly to the grazing treatments although reptile richness and captures of geckos and skinks were the lowest and agamid captures were the highest at heavily grazed sites. Nephrurus levis was the only reptile species to increase significantly, while captures of some smaller geckoes declined, within the feral‐proof treatment. Feral predation exerted a more significant effect on most small mammal species than the levels of cattle grazing assessed in this study, yet reptile responses to grazing or feral animals were less apparent and were likely primarily driven by changes in vegetation cover or secondary trophic impacts.     

Biodiversity of semi‐arid Mediterranean grasslands: Impact of grazing and afforestation

Question: What is the impact of grazing and/or afforestation on grassland diversity, species composition and cover parameters? Location: Semi‐arid Mediterranean grasslands of Jordan. Methods: Vegetation, litter, bare soil and rock cover were compared among four management types – free grazing and protected from grazing with three levels of tree cover. Species composition, plant cover, species richness and evenness were used to evaluate differences in vegetation among management types. Species composition differences among management types were also investigated. Results: Semi‐arid Mediterranean grasslands harbour appreciable levels of plant biodiversity. Grazing did not affect plant diversity, indicating the high resilience against and adaptation to grazing; however,grazing affected species composition and cover parameters. Afforestation seems to protect soil through higher litter cover but its impact on plant biodiversity was negative and markedly affected species composition. Conclusions: Neither protection from grazing or massive afforestation alone are sufficient for conserving biodiversity in this system. A management model is suggested where the landscape should be maintained as a mosaic of four management types: complete protection from grazing, grazing rotation, planting sparse trees in eroded areas and revegetating degraded areas using native, herbaceous and grazing tolerant species.     

Episodic outbreaks of small mammals influence predator community dynamics in an east African savanna ecosystem

Little is known about the dynamics of small mammals in tropical savanna: a critical gap in our understanding of Africa's best known ecosystems. Historical evidence suggested small mammals peak in abundance (outbreak) in Serengeti National Park (SNP), as in agricultural systems. We asked 1) what are bottom–up drivers of small mammals and 2) do predators have top–down effects? We documented dynamics of small mammals, birds of prey, and mammalian carnivores in SNP and agricultural areas. We used climatic fluctuations and differences between unmodified and agricultural systems as perturbations to examine trophic processes, key to understanding responses to climate change and increasing human pressures. Data were derived from intermittent measures of abundance collected 1968–1999, combined with systematic sampling 2000–2010 to construct a 42‐year time series. Data on abundance of black‐shouldered kites (1968–2010), eight other species of rodent‐eating birds (1997–2010), and 10 carnivore species (1993–2010) were also collated. Outbreaks occurred every 3–5 years in SNP, with low or zero abundance between peaks. There was a positive relationship between rainfall in the wet season and 1) small mammal abundance and 2) the probability of an outbreak, both of which increased with negative Southern Oscillation Index values. Rodent‐eating birds and carnivores peaked 6–12 months after small mammals. In agricultural areas, abundance remained higher than in natural habitats. Abundances of birds of prey and mammalian carnivores were extremely low in these areas and not related to small mammal abundance. Small mammals are an important food resource for higher trophic levels in the Serengeti ecosystem. Changes in climate and land use may alter their future dynamics, with cascading consequences for higher trophic levels, including threatened carnivores. Although outbreaks cause substantial damage to crops in agricultural areas, small mammals also play a vital role in maintaining some of the diversity and complexity found in African savanna ecosystems.     

Plant and small mammal richness correlate positively in a biodiversity hotspot

Hotspots of biodiversity are important areas in facilitating an understanding of species richness and its maintenance. Herbivores can increase plant richness by reducing dominant plant species thus providing space for subdominant species. As small mammals are abundant in the Succulent Karoo and therefore might affect plant richness by means of herbivory, we tested if this mechanism might exist in the Succulent Karoo in southern Africa, a biodiversity hotspot due to its extraordinary plant richness. At ten ecologically different study sites we measured plant and small mammal richness and diversity and determined 11 abiotic factors including soil composition, altitude and rainfall. We found positive correlations between plant richness and the number of small mammal species. A general linear model revealed that the number of small mammal species was more important than abiotic factors in explaining variation in plant richness. To test whether small mammals might directly influence plant richness, we studied the influence of the bush-Karoo rat Otomys unisulcatus, a central place forager, on the plant community. The immediate surroundings of occupied O. unisulcatus nests showed significantly higher plant richness than control areas. We conclude that small mammals can have a positive effect on plant richness in the Succulent Karoo. While experimental data are needed to support these correlative results, the results of our study indicate that areas of high small mammal richness should be included in conservation programs of the Succulent Karoo.     

Influence of Fire Mosaics,Habitat Characteristics and Cattle Disturbance on Mammals in Fire-Prone Savanna Landscapes of the Northern Kimberley

Patch mosaic burning, in which fire is used to produce a mosaic of habitat patches representative of a range of fire histories (‘pyrodiversity’), has been widely advocated to promote greater biodiversity. However, the details of desired fire mosaics for prescribed burning programs are often unspecified. Threatened small to medium-sized mammals (35 g to 5.5 kg) in the fire-prone tropical savannas of Australia appear to be particularly fire-sensitive. Consequently, a clear understanding of which properties of fire mosaics are most instrumental in influencing savanna mammal populations is critical. Here we use mammal capture data, remotely sensed fire information (i.e. time since last fire, fire frequency, frequency of late dry season fires, diversity of post-fire ages in 3 km radius, and spatial extent of recently burnt, intermediate and long unburnt habitat) and structural habitat attributes (including an index of cattle disturbance) to examine which characteristics of fire mosaics most influence mammals in the north-west Kimberley. We used general linear models to examine the relationship between fire mosaic and habitat attributes on total mammal abundance and richness, and the abundance of the most commonly detected species. Strong negative associations of mammal abundance and richness with frequency of late dry season fires, the spatial extent of recently burnt habitat (post-fire age <1 year within 3 km radius) and level of cattle disturbance were observed. Shrub cover was positively related to both mammal abundance and richness, and availability of rock crevices, ground vegetation cover and spatial extent of ≥4 years unburnt habitat were all positively associated with at least some of the mammal species modelled. We found little support for diversity of post-fire age classes in the models. Our results indicate that both a high frequency of intense late dry season fires and extensive, recently burnt vegetation are likely to be detrimental to mammals in the north Kimberley. A managed fire mosaic that reduces large scale and intense fires, including the retention of ≥4 years unburnt patches, will clearly benefit savanna mammals. We also highlighted the importance of fire mosaics that retain sufficient shelter for mammals. Along with fire, it is clear that grazing by introduced herbivores also needs to be reduced so that habitat quality is maintained.     

Is shadier better? The effect of agroforestry management on small mammal diversity

Agroforestry systems play fundamental roles for wildlife conservation, but are prone to disturbances from management practices aiming at increasing local productivity. This work investigates the small mammal assemblages present in cacao agroforests, which differ in shade tree density. We tested the prediction that higher tree density increases shade level, analyzed how some environmental variables important for small mammals (vegetation complexity, tree basal area, and invertebrate biomass) vary across the shade level gradient, and how the assemblages respond to these variations. We also tested the effect of the environmental variables on the abundance of the three most common species: Rhipidomys mastacalis, Hylaeamys seuanezi, and Marmosa murina. We captured 651 individuals belonging to 18 species. A positive relationship was observed between an abundance of non-forest specialists and tree basal area, while species diversity within this group showed positive association with vegetation complexity. Assemblage structure (described by a matrix of species abundance per site) was not affected by our environmental variables, but R. mastacalis was more abundant in sites with lower vegetation complexity. Higher shade levels in cacao agroforest tended to occur in sites with greater tree basal area, which was not a good predictor of small mammal diversity. This suggests that environmental management to reduce shade with the purpose of increasing cacao productivity is not necessarily negative for small mammal conservation. Species diversity was favored by structurally complex systems, a possible response to greater niche diversity.