Organization of the origins of replication of the chromosomes of Mycobacterium smegmatis, Mycobacterium leprae and Mycobacterium tuberculosis and isolation of a functional origin from M. smegmatis

The genus Mycobacterium is composed of species with widely differing growth rates ranging from approximately three hours in Mycobacterium smegmatis to two weeks in Mycobacterium leprae. As DNA replication is coupled to cell duplication, it may be regulated by common mechanisms. The chromosomal regions surrounding the origins of DNA replication from M. smegmatis, M. tuberculosis, and M. leprae have been sequenced, and show very few differences. The gene order, rnpA-rpmH-dnaA-dnaN-recF-orf-gyrB-gyrA, is the same as in other Gram-positive organisms. Although the general organization in M. smegmatis is very similar to that of Streptomyces spp., a closely related genus, M. tuberculosis and M. leprae differ as they lack an open reading frame, between dnaN and recF, which is similar to the gnd gene of Escherichia coli. Within the three mycobacterial species, there is extensive sequence conservation in the intergenic regions flanking dnaA, but more variation from the consensus DnaA box sequence was seen than in other bacteria. By means of subcloning experiments, the putative chromosomal origin of replication of M. smegmatis, containing the dnaA-dnaN region, was shown to promote autonomous replication in M. smegmatis, unlike the corresponding regions from M. tuberculosis or M. leprae.     

The distribution of calanoid copepods in the plankton of Wisconsin Lakes

Zooplankton communities from 499 lakes were examined for calanoid copepod species. Limnocalanus macrurus and Senecella calaloides are confined to Lakes Michigan, Superior and one inland lake each. Eurytemora affinis has recently become established in the coastal waters of Lakes Michigan and Superior. Epischura lacustris is present in the summer plankton of a wide variety of lake types. Aglaodiaptomus leptopus is sensitive to fish predation and confined to small lakes without fish. Leptodiaptomus ashlandi is restricted to Lakes Michigan and Superior, but L. sicilis is also found in some inland lakes. Leptodiaptomus minutus is a boreal species found mostly in lakes of the far north. Skistodiaptomus oregonensis is the most commonly occurring calanoid and seems well adapted to lakes of the meso-to low eutrophic types. Skistodiaptomus pallidus is also generally distributed throughout the state, but less common than oregonensis and adapted to more eutrophic lakes. Leptodiaptomus siciloides and A. clavipes are western species, adapted to eutrophic lakes, which are expanding their ranges eastward, aided by cultural eutrophication.     

A note on the structure of system state spaces and its implications on the existence of non-repeatable experiments

The implication of state space structure on the existence of a repeatable experimentE designed to determine if a states∈L has propertyP or notP is investigated. It is shown that if a state spaceL is connected, then no experimentE is repeatable. This formalism is used to demonstrate that if a propertyP has an associated set of points inL which is dense with dense complement inL, then there exists no repeatable experimentE which can be used to test whethers has propertyP or notP. Other consequences of this formalization are discussed.     

Species of hypocrella

Summary Additional information is given from studies of types and authentic specimens for 25 species of Hypocrella.Stereocrea aurantiaca is transferred to Hypocrella asH. aurantiaca (Petch) comb. nov.,H. caulium is considered an invalid name andH. brasiliana (P. Henn.) comb. nov. is proposed. It is concluded thatH. sloaneae, H. nectroides, H. citrina, H. melaena, H. disjuncta andH. amazonica all are valid species.H. verruculosa is considered conspecific withH. phyllogena. H. fluminensis is a synonym ofH. epiphylla andH. guaranitica, H. spegazzini, H. orbicularis andH. cornuta are synonyms ofH. palmae. Similarities between several species of the eastern and western hemispheres are noted.Paper from the Herbarium and the Department of Botany, University of Michigan, Ann Arbor, Michigan.     

Characterization of mariner transposon from the genome of Himasthla elongata fluke

A novel DNA-transposon Hemar1 has been identified and characterized in the genome of the flatworm Himasthla elongata. This transposon is a representative of the mariner family, which is widely spread in eukaryotes; it belongs to the capitata subfamily and is highly homologous to the mariner element of the freshwater turbellarian worm Dugesia tigrina. The Hemar1 transposon has been established as a dispersed repeat and accounts for about 0.01% of the H. elongata genome. The identified Hemar1 element is a convenient tool for the further study of the functioning of mobile elements in the H. elongata genome.     

The subfamily classification of the Micropezidae and the genera of Eurybatinae (Diptera: Schizophora)

The classification of the family Micropezidae is re-examined and a key is given to the five subfamilies now recognised, of which Calycopteryginae is described as new and Eurybatinae is raised from tribal rank. Metopochetini is a new tribe of Eurybatinae. A key is given to the nine genera now included in the Eurybatinae, of which Papeza is described as new. P.szentivanyi is a new species from Papua. Notes on the taxonomy and distribution of genera are included. The position of Anaeropsis Bigot in the Micropezidae is confirmed. New synonymies are established as follows: Crepidochetus Enderlein (= Gongylocephala Czerny syn. n.); Metopochetus bivittatus (Macquart) (= Calobata tenuipes Walker syn. n.). New generic combinations are as follows: Metopochetus terminalis (Walker) and M.compressus (Walker) from Calobata; Crepidochetus nigrifemur (Czerny), C.pallidus (Steyskal), and Cater (Steyskal) from Gongylocephala; Crosa fragilis (Walker) from Micropeza; Crosa nigriventris (Enderlein) and C.uneifera (de Meijere) from Eurybata.     

Systematic revision of the catfish genusSilurus,with description of a new species from Thailand and Burma

On the basis of external morphology and anatomy, 17 scpeies of the genusSilurus Linnaeus including a new species,S. torrentis from Thailand and Burma, are recognized as valid.S. bedfordi Regan is synonymized withS. asotus, andS. goae Haig is transferred to the genusOmpok. From an anatomical study of 12 species, the diagnostic feature of the genusParasilurus Bleeker is revealed to be invalid, and the genus is synonymized withSilurus. From the phylogenetic analysis, the genusSilurus is divided into two major species groups, thecochinchinensis group which is disributed mainly in Southeast Asia, and theglanis group which is further separated into three subgroups occurring separately in East Asia and Europe. The pattern of distribution and relationships between ontogeny and phytogeny in the genusSilurus are briefly discussed.     

An update on the status of native and exotic freshwater fishes of Italy

An updated, corrected checklist of both native and established alien freshwater fish species in Italy is given based on molecular, morphological and biogeographical data. Some 12 native species, reported as conspecific with transalpine species in official Italian ichthylogical literature, are in fact endemics. Previous taxonomic confusion has resulted in the introduction of several alien species, either with official stockings or mixed in as impurities. Rehabilitated species include the cyprinids Scardinius hesperidicus, Scardinius scardafa and Telestes savigny from northern Italy, as well as Squalius ruffoi and the Telestes comes from southern Italy. Squalius albus is a junior synonym of S. squalus. The endemic gudgeon, previously assigned to the genus Romanogobio, is returned to the genus Gobio (G. benacensis). Phoxinus lumaireul is a junior synonym of P. phoxinus. Among the Salmonidae, Salmo cenerinus is a junior synonym of S. marmoratus, while Salmo farioides represents the trout species of the Adriatic lineage for which a neotype is designated. Thymallus aeliani represents the endemic lineage of grayling of the Adriatic populations. The esocid Esox cisalpinus is an endemic pike species and Esox flaviae is a junior synonym; the extensive exportation as well as the presence of this species throughout Europe is possibly due to humans. Among sculpins, Cottus scaturigo and C. ferrugineus are junior synonyms of C. gobio. The International Union for Conservation of Nature (IUCN) categories for native species of Italy are updated. At present, 52 native freshwater fish species are listed: 2 are extinct (Acipenser sturio and Huso huso), 12 are critically endangered, 7 endangered, 10 vulnerable, 3 near‐threatened, 15 low concern and 3 data‐deficient; 35 species are the result of human transfers. Among the 51 introduced species, 6 are recently established (Leuciscus leuciscus, Oreochromis niloticus, Poecilia reticulata, Xiphophorus helleri, Amatitlania nigrofasciatus, Hemichromis sp.), 37 are already established, 5 are probably established and 3 are non‐established Chinese carp, maintained in the wild by intensive stockings. The family most involved is the Cyprinidae, with 22 alien and 20 native species.     

Analysis of a case of somatic instability in a strain of maize from India

A case of somatic instability affecting aleurone colour in a strain of maize from India with flint background was analysed. The somatic instability is localized to theC ¹ (Inhibitor) allele ofC locus on the short arm of chromosome 9. Molecular tests indicated thatAc is not present in the Indian stock and the evidence is consistent with the involvement of theEn (Spm) transposable element in the instability. The presence of theEn (Spm)-like element in the stock would suggest that these elements have been present in the maize genome for a long time. A new allele ofshrunken (sh1) gene with a somewhat unorthodox breeding behaviour is also described.     

A systematic study of Phytalmia (Diptera, Tephritidae) with description of a new genus

The tribe Phytalmiini is defined to include the genera Phytalmia Gerstaecker, Diplochorda Osten Sacken (=Nesadrama Perkins syn.n.) and Sessilina gen.n. (type-species Dacus nigrilinea Walker), with Ortaloptera Edwards as an outlying member; a key is provided to these genera. The tribe is nearly restricted to the Papuan Subregion; the record of Nesadrama petiolata Hardy from the Philippine Islands is questioned, and this species is synonymized with Diplochorda myrmex Osten Sacken syn.n. Nesadrama longistigma Perkins is a synonym of D.turgida (Walker) syn.n. Keys are provided to the six species of Phytalmia: alcicornis (Saunders), antilocapra sp.n., biarmata Malloch, cervicornis Gerstaecker (=prisca Enderlein syn.n.), megalotis Gerstaecker (= wallacei Saunders syn.n.), mouldsi sp.n.; also the three species of Sessilina, horrida sp.n., literata sp.n., nigrilinea (Walker). The enlarged cheek-processes may be greatly reduced in P.biarmata and cervicornis. The morphology of the internal reproduction system of mouldsi females is described.     

Molecular phylogeny of Macrolycus (Coleoptera: Lycidae) with description of new species from China

Macrolycus is a genus of net‐winged beetles with 69 species distributed in the eastern Palearctic and northernmost part of the Oriental region. The first molecular phylogeny of Macrolycus was produced using an rrnL + tRNA‐Leu + nad1 mtDNA fragment. The major lineages and species limits were identified with morphology and molecular data. We propose that Cerceros is a subgenus of Macrolycus to enable identification of all adult specimens in the genus without DNA sequencing. Two species groups are proposed in Macrolycus s. str. and six in Cerceros. Additionally, twelve Macrolycus species are newly described from China: M. aquilinus, M. baihualingensis, M. bicolor, M. guangxiensis, M. jianfenglingensis, M. kuatunensis, M. lizipingensis, M. parvus, M. phoeniceus, M. rhodoneurus, M. rosaceus and M. sichuanensis. Macrolycus holzschuhi is proposed to be a junior subjective synonym of M. jeanvoinei. The highest diversity of Macrolycus is found in southern China. The species from the main islands of Japan are placed in two species groups: M. excellens is a sister to remaining species of the M. murzini group and the M. flabellatus group is a monophylum of closely related species in a sister position to the M. bicolor group.     

Succession in zooplankton and hydrophytes of a seasonal water on the west coast of South Africa

Paramesochra mielkei sp.n. is described and figured from the interstices of subtidal sandy sediments off the SW Dutch coast. Kunz' (1981) phylogenetic scheme of the Paramesochridae Lang, 1948 is re-examined and it is suggested that the family comprises two phyletic lines which originated early in paramesochrid evolution. Translation into Linnean hierarchies implies the establishment of two new sub-families. Within the primitive Diarthrodellinae subfam. n., Tisbisoma Bozic, 1964 is ancestral to Diarthrodella Klie, 1949 s.l. and Rossopsyllus Soyer, 1975. Remanea Klie, 1929 is transferred to the Paramesochrinae subfam. n. which comprises the genera of both the Scottopsyllus- and the Paramesochra-group. The aberrant genus Caligopsyllus Kunz, 1975, standing close to Apodopsyllus, is removed from the Paramesochra-group. P. brevifurca Galhano, 1970 is splitted into two subspecies and replaced in the genus Paramesochra. An attempt is made to assess the phyletic interrelationships of the Paramesochra-species and the resulting cladogram splits the genus into four species-groups. P. mielkei sp.n. is referred to the dubia-group and seems to be closely related to P. borealis Geddes, 1981. Finally, an amended diagnosis and a revised key to the species of the genus Paramesochra are presented.     

A new tribe, Epistomentini, of Buprestidae (Coleoptera) with a redefinition of the tribe Chrysochroini

A new tribe Epistomentini is designated to include Epistomentis Solier, Cyria Solier (with which Cyrioides Carter and Xenocyria Obenberger are synonymized), Diadoxus Thomson, Cyrioxus Hoschek, and a new genus and species Araucariana queenslandica, which is described. The tribe Chrysochroini is redefined, and Epidelus Deyrolle, Cyalithus Thomson, Cyalithoides Fisher and Chrysopistus Thery are transferred to it from the Chalcophorini. Chalcophoropsis Thomson is transferred from the Chrysochroini to the Chalcophorini. A reassessment of the value of some characters used in the higher classification of the Buprestidae is given.     

Constitutive mutation of cysJIH operon in a cysB deletion strain of Salmonella typhimurium.

Summary In a cysB deletion strain a new mutation, denoted cys-2332 was isolated, which causes the constitutive expression of the cysJIH operon. cys-2332 is closely linked to cysJIH and presumably is located in the initiator region of this operon, rendering its expression independent of the cysB gene product and the internal inducer O-acetyl-L-serine. The presence of salfite reductase (encoded by cysI and cysJ) activity in a cysB ^- cys-2332 double mutant indicates that cysG, which is not linked to cysJIH but is required for the synthesis of the sulfite reductase co-factor siroheme, is not controlled by cysB.     

The turtles of the Purbeck Limestone Group of Dorset, southern England

The turtles from the Purbeck Limestone are revised and it is concluded that there are four shell‐based cryptodire species present, namely Pleurosternon bullockii, ‘Glyptops’typocardium comb. nov., Helochelydra anglica comb. nov.,Hylaeochelys latiscutata. There is also one skull‐based species, Dorsetochelys delairi, which may prove to be the skull of ‘Glyptops’, Hylaeochelys or an unknown shell‐type. All other taxa are junior synonyms except ‘Chelone’obovata Owen, 1842 and Tretosternon punctatum Owen, 1842 which are nomina dubia, the material being unfigured and either lost or incorrectly associated. Other taxonomic conclusions are that (1) because Tretosternon is a nomen dubium, the next senior name for this Purbeck–Wealden genus is Helochelydra Nopcsa, 1928; (2) ‘Pleurosternon’typocardium and ‘Glyptops’ruetimeyeri are synonymous, the senior combination being ‘Glyptops’typocardium; (3) the Purbeck ‘Tretosternon’ material is combined with the holotype and only specimen of Platychelys? anglica as Helochelydra anglica comb. nov.; (4) Hylaeochelys emarginata and H. sollasi are junior synonyms of Hylaeochelys latiscutata; (5) one of Owen's ‘lost’ syntypes of ‘Tretosternon punctatum’ has been recognised and is a plastron of Hylaeochelys latiscutata.