Integrating genetic and parasitological approaches in the frame of multidisciplinary fish stock analysis

To assess fish stocks boundaries and state, the tools of population genetics have been widely used, contributing to the evaluation of relevant parameters such as the identification of stock boundaries, the assessment of gene flow and the estimation of effective population size. Also, increasing evidences show that the monitoring of the genetic diversity level is a reliable method to check the status of fish stocks. However, genetics cannot answer all the questions. For example, in high gene flow species the genetic approach could have not enough resolution to identify stock limits, while the use of parasites as biological tags could provide insights into stock structure. Even better, the so-called holistic approach, applying simultaneously a wide range of complementary techniques, is the only one considered able to provide a reliable and complete picture of fish stocks and to address a sustainable exploitation of marine resources. The work will present some examples from multidisciplinary studies concerning commercially relevant species with different biological features: the demersal European hake (Merluccius merluccius), the small pelagic horse mackerel (Trachurus trachurus) and the large pelagic swordfish (Xiphias gladius). In all these case studies merging genetic, parasitological and environmental data helped to reveal the real patterns of stocks structure.     

The utility and limitations of genetic data for stock identification and management of North Pacific rockfish (Sebastes spp.)

Rockfishes (Sebastes spp.) represent a speciose and ecologically important group of marine fishes found in both the Pacific and Atlantic oceans, with approximately 105 species found world-wide (Hyde and Vetter 2007). They also comprise the majority of species found in the Pacific groundfish fishery. Thorough species assessments in terms of harvest management have been done for only 11 species, and of the 11 species, seven have been declared overfished. Having accurate genetic information is critical to the continuing effort at stock assessments, but sampling is often difficult in marine fishes. Genetic techniques are a powerful tool in the effort to better characterize the ecology of these species. These techniques can be used to investigate multiple biological traits, including species identity, intra- and interspecific genetic variation, migration patterns, and effective population size. There are important caveats and limitations when applying specific genetic methods, especially in marine species that lack discrete spawning aggregates. Nevertheless, it is clear from a review of recent literature that genetic tools have already provided very specific insight regarding rockfish population dynamics. The results are diverse and difficult to synthesize; however, existing studies show five primary patterns to population groupings in rockfishes: no obvious pattern of structure, structure consistent with isolation by distance, structure evident but inconsistent with isolation by distance, structure that correlates to oceanographic features, and potential genetic introgression. Clearly the study of rockfish population genetics is poised for rapid expansion that will unquestionably aid management of the rockfish fisheries and general understanding of rockfish evolutionary systematics. A principle challenge at this point is to derive generalized inferences from such a diverse array of study results across the vast North Pacific range of Sebastes. This review summarizes existing genetic studies in Sebastes spp. in the North Pacific to assist in identifying knowledge gaps for this ecologically important and diverse group.     

Assessing Genetic Diversity of Brazilian Reef Fishes by Chromosomal and DNA Markers

Little is known on genetics of Brazilian coral reef fish and most of this information is limited to chromosome characterization of major representative species. The diploid chromosome number in marine fish varies from 2n= 22–26 to 2n = 240–260. Despite of this apparent diversity, most studied marine species have a diploid complement with 48 acrocentric chromosomes. This latter trend is mostly observed among Perciformes, an important major taxon of coral reef fishes. Studies in the families Pomacentridae, Pomacanthidae and Chaetodontidae, for example, have shown a common karyotype pattern entirely formed by 48 uniarmed chromosomes. However, rare numerical and structural chromosome polymorphisms and cryptic chromosome rearrangements involving heterochromatin segments and/or nucleolar organizing sites have been reported among such fishes. Although new chromosome forms can contribute to the establishment of genetically isolated populations, their role in reef fish speciation at marine realm still is an open question. More recently, genomic DNA analyses using RAPD and microsatellites, and sequencing and RFLP of mitochondrial DNA have increasingly been used in Atlantic reef fish species. Genetic homogeneity over wide geographical ranges has been reported for different fish groups, in contrast to several cases of population substructuring related to environmental constraints or evolutionary history. Amazonas outflow and upwelling on the Southeastern coast of Brazil are believed to be strong barriers to dispersal of some reef species. Moreover, it is suggested that the pattern of speciation and population structure at South Atlantic is quite distinctive from Pacific Ocean, even when comparing closely related taxa. Further genetic studies are strongly encouraged in Brazilian reef fishes in order to provide a reliable scenario of the genetic structure in this important and diverse fish group.     

Evidence of Segregated Spawning in a Single Marine Fish Stock: Sympatric Divergence of Ecotypes in Icelandic Cod?

There is increasing recognition of intraspecific diversity and population structure within marine fish species, yet there is little direct evidence of the isolating mechanisms that maintain it or documentation of its ecological extent. We analyzed depth and temperature histories collected by electronic data storage tags retrieved from 104 Atlantic cod at liberty ≥1 year to evaluate a possible isolating mechanisms maintaining population structure within the Icelandic cod stock. This stock consists of two distinct behavioral types, resident coastal cod and migratory frontal cod, each occurring within two geographically distinct populations. Despite being captured together on the same spawning grounds, we show the behavioral types seem reproductively isolated by fine-scale differences in spawning habitat selection, primarily depth. Additionally, the different groups occupied distinct seasonal thermal and bathymetric niches that generally demonstrated low levels of overlap throughout the year. Our results indicate that isolating mechanisms, such as differential habitat selection during spawning, might contribute to maintaining diversity and fine-scale population structure in broadcast-spawning marine fishes.     

The habitats exploited and the species trapped in a Caribbean island trap fishery

We visually observed fish traps in situ to identify the habitats exploited by the U.S. Virgin Islands fishery and to document species composition and abundance in traps by habitat. Fishers set more traps in algal plains than in any other habitat around St. John. Coral reefs, traditionally targeted by fishers, accounted for only 16 % of traps. Traps in algal plain contained the highest number of fishes per trap and the greatest numbers of preferred food species. Traps on coral reefs contained the most species, 41 of the 59 taxa observed in the study. Acanthurus coeruleus was the most abundant species and Acanthuridae the most abundant family observed in traps. Piscivore numbers were low and few serranids were observed. Traps in algal plain contained the most fishes as a result of: ecological changes such as shifts in habitat use, mobility of species and degradation of nearshore habitat (fishery independent); and, catchability of fishes and long-term heavy fishing pressure (fishery dependent). The low number of serranids per trap, dominance of the piscivore guild by a small benthic predator, Epinephelus guttatus, and dominance of trap contents overall by a small, fast-growing species of a lower trophic guild, Acanthurus coeruleus, all point to years of intense fishing pressure.     

Marine reserves indirectly affect fine‐scale habitat associations,but not overall densities,of small benthic fishes

Many large, fishery‐targeted predatory species have attained very high relative densities as a direct result of protection by no‐take marine reserves. Indirect effects, via interactions with targeted species, may also occur for species that are not themselves targeted by fishing. In some temperate rocky reef ecosystems, indirect effects have caused profound changes in community structure, notably the restoration of predator–urchin–macroalgae trophic cascades. Yet, indirect effects on small benthic reef fishes remain poorly understood, perhaps because of behavioral associations with complex, refuge‐providing habitats. Few, if any, studies have evaluated any potential effects of marine reserves on habitat associations in small benthic fishes. We surveyed densities of small benthic fishes, including some endemic species of triplefin (Tripterygiidae), along with fine‐scale habitat features in kelp forests on rocky reefs in and around multiple marine reserves in northern New Zealand over 3 years. Bayesian generalized linear mixed models were used to evaluate evidence for (1) main effects of marine reserve protection, (2) associations with habitat gradients, including complexity, and (3) differences in habitat associations inside versus outside reserves. No evidence of overall main effects of marine reserves on species richness or densities of fishes was found. Both richness and densities showed strong associations with gradients in habitat features, particularly habitat complexity. In addition, some species exhibited reserve‐by‐habitat interactions, having different associations with habitat gradients inside versus outside marine reserves. Two species (Ruanoho whero and Forsterygion flavonigrum) showed stronger positive associations with habitat complexity inside reserves. These results are consistent with the presence of a behavioral risk effect, whereby prey fishes are more strongly attracted to habitats that provide refuge from predation in areas where predators are more abundant. This work highlights the importance of habitat structure and the potential for fishing to affect behavioral interactions and the interspecific dynamic attributes of community structure beyond simple predator–prey consumption and archetypal trophic cascades.     

Status of research on Yangtze fish biology and fisheries

The Yangtze is the largest river in China and the third largest river in the world. Being pregnant with plentiful fish resources, it is not only the representative of the areas with biological diversity, but also a cradle of freshwater fisheries in China. In the Yangtze, at present, the fishery resources are seriously depleted; the fishery yield by fishing is significantly reduced; significant changes have occurred on the structure of fish community, with decrease in migratory fish species, reduction in the quantity of the populations of rare, peculiar and economically important fish species and increase in the number of exotic fish species, and severe trend in fish stunting. Habitat fragmentation and shrinkage, resources overexploitation, water pollution and invasion of exotic species are the main causes for threatening fish stocks in the Yangtze River. Since 1950’s, a lot of scientific researches have been conducted on biology of fishes from the Yangtze River and its fisheries to provide scientific basis for their protection. In recent years, measures such as closed spring, fish reserves, artificial enhancement & release, ecological rehabilitation, fishery management and international cooperation have played important roles. Nevertheless, researches on fishes from the Yangtze cannot adequately meet the demand for their protection. Especially, those in the aspects of population ecology of Yangtze fishes, species endangerment mechanism, ecological effects of large hydraulic projects and protection strategy are not deep enough. It is recommended that scientific researches should be conducted in comprehensive survey of Yangtze fish resources, fish endangerment mechanism, techniques in artificial enhancement and release of key species, risk assessment of exotic species, ecological rehabilitation of major fisheries functional zones, etc.     

Diel,semi‐lunar and seasonal patterns in the fish community of an intertidal zone of the Yangtze estuary

The structure and temporal variations of the fish community in the intertidal estuarine zone of shallow mud areas have been poorly studied in China. This paper analyses the diel, semi‐lunar and seasonal patterns of fish assemblages in the Yangtze estuary in 2006. Fish were collected by consecutive day and night samplings using tide‐stow‐nets deployed parallel to each other in three stations. A total of 56 fish species belonging to 21 families was caught during the study period. The family Cyprinidae dominated with 25 species. Freshwater fish species were the important dominant commercial fishery species and well represented with five species (sharpbelly Hemiculter bleekeri, goldfish Carassius auratus, bream Parabramis pekinensis, likely‐bream Pseudobrama simony, and glossy yellow catfish Pelteobagrus nitidus) in the three stations. Juvenile fishes dominated the fish community, comprising 93.9% in station 1 and 96.6% in station 2 of the total abundance. The number of fish species in day tides was slightly lower than those in night tides in spring and summer, but the opposite in other seasons. In neap tides, the numbers and abundance of fish species were both lower than those in the spring tides. Fish abundance was lowest in winter, increasing during spring and summer (March–September) in both stations 1 and 2, with obviously large fluctuations in each season. The pattern of habitat selection of fishes could effectively decrease the food competition of intraspecies or interspecies and favour the growth and nursing of young fishes. These findings indicate that the intertidal zones in the estuary may serve as important nursery areas for fish communities.     

Parasites as biological tags in population studies of demersal and pelagic fish species

Among the different techniques applied in a holistic approach for fish stock identification, the use of parasites as "biological tags" is becoming increasingly important. In this presentation, our recent studies on the use of some parasite species, identified by genetic markers, and the parasite/fauna composition, in stock identification of demersal (Merluccius merluccius), small pelagic (Trachurus trachurus), and large pelagic fish species (Xiphias gladius) are reviewed. Different species of Anisakis and Hysterothylacium were genetically identified by the application of genetic (allozyme) markers. Statistically significant differences in the spatial distribution of distinct species of Anisakis were found in the fish considered. As to the species of Hysterothylacium genetically detected, different relative proportions were detected in several Mediterranean and Atlantic samples of swordfish (X. gladius). This study demonstrates the potential value of these anisakid nematodes, at both larval and adult stages, as "biological tags" for these fish species in European waters.     

Genetic structure of three marine fishes from the Gulf of Pagasitikos (Greece) based on allozymes, RAPD, and mtDNA RFLP markers

In the present work we used three molecular techniques (allozymes, RAPDs and mtDNA RFLPs) in order to study the genetic structure of three commercial marine species (Mullus surmuletus, Mullus barbatus, and Pagellus erythrinus). Each species was sampled from three locations within the Gulf of Pagasitikos, Greece and from two neighbouring locations outside the Gulf (Trikeri and Alonissos). Values of genetic heterozygosity and nucleotide diversity for all populations studied were similar or above the mean values observed in marine fishes. None of the three types of molecular markers used revealed diagnostic patterns, which could allow the allocation of individuals to one of the populations. The analyses revealed that the three populations within Pagasitikos were homogenous representing thus a panmictic stock. However, there were evidences of genetic population subdivision between localities from inside and outside of the Pagasitikos Gulf. The results provide essential information for the design of a sustainable management plan of the Gulf of Pagasitikos and its demersal fish resources.     

A panel of polymorphic EST-derived microsatellite loci for the small yellow croaker (Larimichthys polyactis)

Small yellow croaker (Larimichthys polyactis) is an important economic species of marine fishery. We developed and evaluated simple sequence repeat (SSR) markers from expressed sequence tags (ESTs) of Pseudosciaena crocea, Paralichthys olivaceus and Psetta maxima. Characteristics of nine EST–SSR loci were investigated using 46 L. polyactis individuals. The number of alleles per locus ranged from 2 to 6. The observed heterozygosity ranged from 0.0652 to 0.7391, while the expected heterozygosity ranged from 0.0638 to 0.7754. Seven loci departed from Hardy–Weinberg equilibrium (P < 0.01) significantly. These loci and markers will be useful for population genetics and systemic evolution among species of small yellow croaker.     

Suitability of surgically implanted 8-mm passive integrated transponder tags for small-bodied fishes

Innovative tools that benefit conservation are critical as freshwater fishes are lost at unprecedented rates. Mark-recapture methods can characterize population demographics and life-history traits of diverse fishes, but suitable techniques for tagging for individual recognition of small-bodied fishes are rare. Passive integrated transponder (PIT) tag technology may facilitate the tagging of small fishes and early life stages of larger species. However, relatively little research has evaluated the suitability of these small (8.4 × 1.4 mm) tags for many groups of small fishes. Tag loss (retention and survival) and growth of individuals implanted with PIT tags relative to control and sham treatments were compared for eight fishes of differing morphologies. Additionally, the utility of cyanoacrylate to improve tag retention was tested on a subset of taxa. Fish of each species were equally divided and randomly assigned to one of three treatment groups (handled [control], surgical incision [sham], or surgical incision and PIT tag implantation [PIT]). During the 42-d study period, mortalities and expelled tags were counted daily and growth was measured weekly. Researchers can generally expect little tag loss and uncompromised growth rates for a variety of small-bodied fishes; however, initial fish length was related to the magnitude of physiological effects for some taxa (i.e., blacknose dace Rhinichthys atratulus, johnny darter Etheostoma nigrum, juvenile white sucker Catostomus commersonii). Relatively poor survival (<80%) was observed for two benthic species: johnny darter and blacknose dace, often when incision wounds became inflamed before healing. Prevalent tag loss for johnny darter, tadpole madtom Noturus gyrinus, and a dorsal-laterally compressed cyprinid can be reduced by closing the wounds with cyanoacrylate, but with substantially increased mortality rates. This research demonstrates the broad applicability of PIT tagging technology for ecological studies of small-bodied fishes and alleviates many concerns when surgically implanting tags into several fishes.     

Exploited marine invertebrates: genetics and fisheries

The application of genetic techniques to invertebrate fisheries is in many ways essentially similar to that in vertebrate (i.e. finfish) fisheries, for which there is already an extensive body of published data. However, there are also relative differences which lead to particular problems in the use of genetic data to study commercially important invertebrate species. The main role for genetics of both vertebrates and invertebrates has been, and is likely to continue to be, the identification of groups of interbreeding individuals as the basis for a fishery. It is in the identification of the breeding unit that the genetic differences between vertebrates and invertebrates can be of practical significance. The genetic breeding unit, usually called a 'stock' in fisheries biology, generally shows a certain uniformity of size in most marine fish which have been studied. Smaller or less mobile fish (e.g. flatfish) may only range a few tens of kilometres to their breeding grounds, whilst in more mobile, particularly migratory pelagic species (e.g. Scombridae), the area occupied by a stock is likely to be far greater and for a few (e.g. large pelagic elasmobranchs), a single unit of stock may be almost circumglobal. However, marine fish generally, particularly those large or plentiful enough to be of commercial interest, are likely to be fairly mobile and in many cases the order of mobility is likely to be in the region we might predict from our knowledge of the biology and habits of the species. In the genetic assessment of `stocks' for invertebrate fisheries, we face a number of additional problems, mostly related to the large evolutionary range of invertebrates exploited and their widely different biology. Although in Europe and North America marine invertebrate fisheries may be thought of as being mainly for decapod crustaceans and bivalve molluscs, globally commercially important marine invertebrate fisheries range from sponges to squid and include such diverse groups as sea cucumbers, barnacles, krill, octopuses, cuttlefish, sea anemones, ascidians, polychaetes, sea urchins, gastropods and jellyfish. An obvious feature of many of these invertebrates is that the adult (i.e. commercial) stage of the life cycle is sessile (e.g. barnacles, sponges, ascidians) or of very limited mobility (e.g. sea anemones, sea urchins, bivalves, gastropods), with the result that the dispersive phase of the life cycle is the larva. Other groups (e.g. krill, jellyfish) are planktonic or nektonic and may cover very large distances, but, unlike fish, have little control over the distance or direction of travel, whilst some of the open ocean pelagic squid are more mobile than most fish and may migrate thousands or kilometres to spawning grounds. The very low mobility of both larva and adult in some invertebrates indicates that dispersal, and hence stock size, is likely to be low and that, therefore, stocks are far more vulnerable to overfishing than in most fish species. An additional difficulty is that genetic studies to date indicate a remarkably high incidence of cryptic speciation in marine invertebrates, sometimes even in comparatively well studied commercially important species. Thus, although to date marine invertebrate fisheries have not received the same level of attention from geneticist as finfish fisheries, it is clear that for invertebrate fisheries genetic data are relatively far more important if a fishery is to be exploited without being endangered.     

Impacts of predator depletion by fishing on the biomass and diversity of non-target reef fish communities

 An understanding of the indirect effects of fishing on predator-prey relationships is required for the development of valid multispecies yield models for reef fisheries and for determining the factors governing fish community structure at larger scales. We used an underwater visual census technique to examine the indirect effects of fishing on the biomass and diversity (species richness) of reef fishes in a series of ten traditional Fijian fishing grounds (qoliqoli) subject to a range of fishing intensities. All members of the families Chaetodontidae (butterflyfishes), Labridae (wrasses), Lutjanidae (snappers), Mullidae (goatfishes), Scaridae (parrotfishes) and the sub-family Epinephelinae (groupers and coral trout) which could be reliably identified were censused. Each species censused was assigned to one of three trophic groups: herbivore, invertebrate feeder or piscivore. The biomass of all piscivorous fishes and of large (>30 cm) piscivorous fishes differed significantly between qoliqoli and was significantly correlated with fishing intensity. However, the biomass of piscivorous fishes was not correlated with the biomass or diversity of their potential prey (which were not targeted by the fishery). This suggested that the indirect effects of fishing did not have an important bearing on fish diversity or biomass and that predation by the target species did not play an important role in structuring these Fijian reef fish communities. The results contrast with those from a number of studies at smaller scales and provided further indications that the structure of reef fish communities is not governed by a single dominant process, but by a range of processes which operate on different scales in different circumstances. Accepted: 29 July 1996     

Acquisition of fishes and aquatic invertebrates for zoological collections. Is there a future?

The majority of the freshwater fishes in the ornamental trade now originate from captive‐bred sources, as do a large proportion of the freshwater species exhibited in public aquariums. In contrast, commercial operators who also supply marine specimens to the ornamental trade remove directly from the wild approximately 98% of the marine fishes and invertebrates exhibited in public aquariums. The common perception prevails that captive propagation is inherently a better alternative to obtaining animals from the wild. Although captive propagation has been shown to have many benefits for terrestrial species, there are a number of features unique to marine species that challenge the idea that every species should be bred in captivity. Some of the key issues relating to the development of widespread conservation‐oriented captive propagation programs include: 1) the high taxonomic diversity in marine animals; 2) the resultant variety in their reproductive methods; 3) their ecological, behavioral, physiological, and nutritional needs; and 4) our general lack of knowledge on their husbandry and medical care. There are several characteristics of marine fish and invertebrate populations that make them suitable candidates for sustainable harvest. For instance, marine teleosts are “r‐selected,” meaning that they have an extremely high fecundity, and most marine teleosts have a wide distribution and the ability to disperse over long distances. In locations considered for fish collection, appropriate management techniques should be employed to ensure that fishes and invertebrates are collected with as little impact on the ecosystem as possible. The collection of marine fishes and invertebrates for public aquariums and the hobby trade should be managed like a fishery to ensure long‐term sustainability. The public aquarium community should support marine organism certification initiatives, such as the Marine Aquarium Council (MAC). Marine organism certification will create market incentives that encourage and support quality and sustainable practices by creating consumer demand and confidence for certified organisms, practices, and industry participants. The creation of refuges that supply propagules to harvested areas, the rotation of areas fished, species‐specific size limits and seasons, and standardization of collecting, handling, and transportation techniques should be used to manage these fisheries and harvest areas. Zoo Biol 22:519–527, 2003. © 2003 Wiley‐Liss, Inc.     

Marine Reserves: from Beverton and Holt to the Present

The idea of using marine reserves, where all fishing is banned is not new to fisheries management. It was first formally considered by Beverton and Holt but rejected in favour of approaches such as fleet and gear control. Since that analysis, many fisheries have collapsed worldwide, illustrating the vulnerability of fishery resources and the ineffectiveness of these approaches. Empirical data and modelling suggest that marine reserves would generally increase yields, especially at the high fishing mortality that occurs in most fisheries. However, the most interesting feature of reserves is their ability to provide resilience to overexploitation, thereby reducing the risk of stock collapse. Benefits from reserves come from the increase in biomass and individual size within them, resulting in adult migration and/or larval dispersal that would replenish fishing grounds. The use of marine reserves in managing fisheries necessitates a thorough understanding of critical habitat requirements, fish movement, fish behaviour, the relations between subpopulations and the critical density effect for larval dispersal. When properly designed, and coupled with other management practices, reserves may provide a better insurance against uncertainties in stock assessment, fishing control and management by protecting a part of the population from exploitation. This strategy can be used for both sedentary and migratory species.     

All in the ears: unlocking the early life history biology and spatial ecology of fishes

Obtaining biological and spatial information of the early life history (ELH) phases of fishes has been problematic, such that larval and juvenile phases are often referred to as the ‘black box’ of fish population biology and ecology. However, a potent source of life‐history data has been mined from the earstones (otoliths) of bony fishes. We systematically reviewed 476 empirical papers published between 2005 and 2012 (inclusive) that used otoliths to examine fish ELH phases, which has been an area of increasing attention over this period. We found that otolith‐based research during this period could be split into two broad themes according to whether studies examined: (i) biological objectives related to intrinsic processes such as larval and juvenile age, growth and mortality, and/or (ii) spatial objectives, such as habitat use, dispersal and migration. Surprisingly, just 24 studies (5%) explored a combined biological–spatial objective by simultaneously exploiting biological and spatial information from otoliths, suggesting much more scope for such integrated research objectives to be answered via the use of multiple otolith‐based techniques in a single study. Mapping otolith analytical techniques across these two approaches revealed that otolith structural analysis was mainly used to investigate biological processes, while otolith chemical analyses were most often applied to spatial questions. Heavy skew in research effort was apparent across biomes, with most (62%) publications specific to marine species, despite comparable levels of species richness and the importance of freshwater taxa (just 15% of papers). Indeed, around 1% (380 species) of a possible 31400+ extant species were examined in our surveyed papers, with a strong emphasis on temperate marine species of commercial value. Potential model species for otolith‐based ELH ecology research are arising, with the eel genus Anguilla (24 studies) and the European anchovy Engraulis encrasicolis (14 studies) attracting more research effort than most other taxa. While there is a preponderance of common techniques (e.g. daily otolith increment counts, increment widths), novel techniques such as transgenerational marking and computed X‐ray tomography, are increasingly being applied in published studies. The application of an integrative approach based on a combination of emerging techniques and traditional methods holds promise for major advances in our understanding of ELH fish ecology and to shine light into the ‘black box’ of fish ecology.     

Temporal and spatial trends in prey composition of wahoo Acanthocybium solandri: a diet analysis from the central North Pacific Ocean using visual and DNA bar‐coding techniques

A diet analysis was conducted on 444 wahoo Acanthocybium solandri caught in the central North Pacific Ocean longline fishery and a nearshore troll fishery surrounding the Hawaiian Islands from June to December 2014. In addition to traditional observational methods of stomach contents, a DNA bar‐coding approach was integrated into the analysis by sequencing the cytochrome c oxidase subunit 1 (COI) region of the mtDNA genome to taxonomically identify individual prey items that could not be classified visually to species. For nearshore‐caught A. solandri, juvenile pre‐settlement reef fish species from various families dominated the prey composition during the summer months, followed primarily by Carangidae in autumn months. Gempylidae, Echeneidae and Scombridae were dominant prey taxa from the offshore fishery. Molidae was a common prey family found in stomachs collected north‐east of the Hawaiian Archipelago while tetraodontiform reef fishes, known to have extended pelagic stages, were prominent prey items south‐west of the Hawaiian Islands. The diet composition of A. solandri was indicative of an adaptive feeder and thus revealed dominant geographic and seasonal abundances of certain taxa from various ecosystems in the marine environment. The addition of molecular bar‐coding to the traditional visual method of prey identifications allowed for a more comprehensive range of the prey field of A. solandri to be identified and should be used as a standard component in future diet studies.     

Effects of marine reserves versus nursery habitat availability on structure of reef fish communities

No-take marine fishery reserves sustain commercial stocks by acting as buffers against overexploitation and enhancing fishery catches in adjacent areas through spillover. Likewise, nursery habitats such as mangroves enhance populations of some species in adjacent habitats. However, there is lack of understanding of the magnitude of stock enhancement and the effects on community structure when both protection from fishing and access to nurseries concurrently act as drivers of fish population dynamics. In this study we test the separate as well as interactive effects of marine reserves and nursery habitat proximity on structure and abundance of coral reef fish communities. Reserves had no effect on fish community composition, while proximity to nursery habitat only had a significant effect on community structure of species that use mangroves or seagrass beds as nurseries. In terms of reef fish biomass, proximity to nursery habitat by far outweighed (biomass 249% higher than that in areas with no nursery access) the effects of protection from fishing in reserves (biomass 21% lower than non-reserve areas) for small nursery fish (≤ 25 cm total length). For large-bodied individuals of nursery species (>25 cm total length), an additive effect was present for these two factors, although fish benefited more from fishing protection (203% higher biomass) than from proximity to nurseries (139% higher). The magnitude of elevated biomass for small fish on coral reefs due to proximity to nurseries was such that nursery habitats seem able to overrule the usually positive effects on fish biomass by reef reserves. As a result, conservation of nursery habitats gains importance and more consideration should be given to the ecological processes that occur along nursery-reef boundaries that connect neighboring ecosystems.     

Spillover of fish naïveté from marine reserves

Spillover of adult fish biomass is an expected benefit from no‐take marine reserves to adjacent fisheries. Here, we show fisher‐naïve behaviour in reef fishes also spills over from marine reserves, potentially increasing access to fishery benefits by making fishes more susceptible to spearguns. The distance at which two targeted families of fishes began to flee a potential fisher [flight initiation distance (FID)] was lower inside reserves than in fished areas, and this reduction extended outside reserve boundaries. Reduced FID persisted further outside reserves than increases in fish biomass. This finding could help increase stakeholder support for marine reserves and improve current models of spillover by informing estimates for spatial changes in catchability. Behavioural changes of fish could help explain differences between underwater visual census and catch data in quantifying the spatial extent of spillover from marine reserves, and should be considered in the management of adjacent fisheries.