Currents and flusing of Britomart reef lagoon,Great Barrier Reef

Currents, sea levels and weather were measured for a 60 d period at a number of sites in and near Britomart reef, Great Barrier Reef. The tidal currents were primarily semi-diurnal in character. The lowfrequency currents were due to a simple balance, in the longshore direction, between the wind stress and the bottom frictional stress, and, in the cross-shelf direction, between the bottom frictional stress and the pressure gradient generated by the passage of wind-driven continental shelf waves. The bottom friction coefficient, for the nonlinear drag law, is estimated to be of the order of 0.02. By contrast, the currents over the surrounding continental shelf are primarily controlled by continental shelf wave dynamics and are not dominated by friction. It thus appears that the water bodies in, respectively, the reef matrix and the Lagoon of the Great Barrier Reef are relatively uncoupled. Tidal and low-frequency currents contributed roughly equally to the flushing of Britomart reef lagoon with an estimated flushing time of the order of 4 d.     

Environmental factors associated with the spatial distribution of crustose coralline algae on the Great Barrier Reef

Crustose coralline algae (CCA) fulfill two key functional roles in coral reef ecosystems: they contribute significantly to reef calcification, and they induce larval settlement of many benthic organisms. Percentage cover of CCA, and environmental conditions, were visually estimated on 144 reefs of the Great Barrier Reef between 10 and 24° latitude S. Reefs were located across the shelf and ranged from turbid near-shore reefs close to rivers to clean-water reefs hundreds of kilometers from coastal influences. On each reef, two sites were surveyed between 0.5 and 18 m depth. Strong cross-shelf trends occurred in cover of CCA, amount of sediment deposited, water clarity, and slope angle. Relative distance across the shelf and sedimentation jointly explained 84% of variation in CCA cover. Three regions running parallel to the shore were identified, with a mean CCA cover of <1% on the inner third of the shelf, and >20% cover on the outer half of the shelf, with a narrow transition region between the two. Within each region, the cover of CCA was unrelated to distance across the shelf, but was related to the sedimentary environment, being relatively higher on reefs with low sediment deposits. On the inner third of the shelf, the most sediment-exposed reefs were unsuitable habitats for CCA. The inverse relationship between CCA and sediment has implications for the recruitment of CCA-specialised organisms, and for rates of reef calcification.     

Impacts and Recovery from Severe Tropical Cyclone Yasi on the Great Barrier Reef

Full recovery of coral reefs from tropical cyclone (TC) damage can take decades, making cyclones a major driver of habitat condition where they occur regularly. Since 1985, 44 TCs generated gale force winds (≥17 metres/second) within the Great Barrier Reef Marine Park (GBRMP). Of the hurricane strength TCs (≥H1—Saffir Simpson scale; ≥ category 3 Australian scale), TC Yasi (February, 2011) was the largest. In the weeks after TC Yasi crossed the GBRMP, participating researchers, managers and rangers assessed the extent and severity of reef damage via 841 Reef Health and Impact Surveys at 70 reefs. Records were scaled into five damage levels representing increasingly widespread colony-level damage (1, 2, 3) and reef structural damage (4, 5). Average damage severity was significantly affected by direction (north vs south of the cyclone track), reef shelf position (mid-shelf vs outer-shelf) and habitat type. More outer-shelf reefs suffered structural damage than mid-shelf reefs within 150 km of the track. Structural damage spanned a greater latitudinal range for mid-shelf reefs than outer-shelf reefs (400 vs 300 km). Structural damage was patchily distributed at all distances, but more so as distance from the track increased. Damage extended much further from the track than during other recent intense cyclones that had smaller circulation sizes. Just over 15% (3,834 km²) of the total reef area of the GBRMP is estimated to have sustained some level of coral damage, with ~4% (949 km²) sustaining a degree of structural damage. TC Yasi likely caused the greatest loss of coral cover on the GBR in a 24-hour period since 1985. Severely impacted reefs have started to recover; coral cover increased an average of 4% between 2011 and 2013 at re-surveyed reefs. The in situ assessment of impacts described here is the largest in scale ever conducted on the Great Barrier Reef following a reef health disturbance.     

Coral communities of barrier reefs of Vietnam

The composition and spatial distribution of the coral communities of the barrier reefs of Jiang Bo and of Re Island were described in detail for the first time for Vietnamese waters. Their comparability to the ribbon reefs of the Great Barrier Reef in Australia and to the barrier reefs of the Philippines and Indian Ocean was revealed by morphological parameters, species diversity and zonal distribution. Their geomorphological status, the presence of fore reef, epi-reef and back reef complexes with their specific composition of flora and fauna, and an obligatory lagoon separating the reef from fringing inshore reefs, enabled the attribution of the surveyed reefs to the barrier type of reef.     

Transport mechanisms and the potential movement of planktonic larvae in the central region of the Great Barrier Reef

It is suggested that considerable inter-reef dispersal of reef fishes and many benthic invertebrates is likely in the central region of the Great Barrier Reef. Larvae are most abundant in spring-summer when currents on the outer shelf, where most of the coral reefs occur, are almost entirely unidirectional and southeastward (longshore). Net drift on the outer shelf at this time is likely to be greater, but the dispersion smaller, than that nearshore at the same time due to more extensive periodic reversals of water movement in the latter area than the former. Net drift on the outer shelf in winter will be significantly more restricted, but the dispersion greater, than in summer due to extensive periodic reversals of currents in this area during the trade wind (winter) season. These conclusions suggest that reefs within the Central Great Barrier Reef are biologically interconnected and interdependent; a result of considerable significance for management of reefs within the Great Barrier Reef marine park.Australian Institute of Marine Science Contribution No. 250     

Spatial and temporal variations in turbidity on two inshore turbid reefs on the Great Barrier Reef, Australia

This study describes the natural turbidity regimes at two inshore turbid reefs on the central Great Barrier Reef where wind-driven waves are the main agent of sediment resuspension. Many corals on inshore turbid reefs have adapted to high and fluctuating turbidity, however, anthropogenic activities such as dredging are speculated to produce larger and more prolonged turbidity events that may exceed the environmental tolerance and adaptive capacity of corals on these reefs. Natural turbidity regimes must be described and understood to determine whether and when coral communities on inshore turbid reefs are at risk from anthropogenically elevated turbidity, but at present few baseline studies exist. Here, we present turbidity data from (a) Middle Reef, a semi-protected reef located between Magnetic Island and Townsville and (b) Paluma Shoals, a reef exposed to higher energy wind and waves located in Halifax Bay. Instruments were deployed on both reefs for 16 days to measure spatial and temporal variations in turbidity and its driving forces (waves, currents, tides). Locally driven wind waves were the key driver of turbidity, but the strength of the relationship was dependent on wave exposure. Turbidity regimes thus vary markedly over individual reefs and this is reflected in community assemblage distributions, with a high abundance of heterotrophic corals (e.g. Goniopora) in reef habitats subjected to large fluctuations in turbidity (>100 NTU). A turbidity model developed using local wind speed data explained up to 75 % and up to 46 % of the variance in turbidity at Paluma Shoals and Middle Reef, respectively. Although the model was based on a brief two-week observational period, it reliably predicted variations in 24-h averaged turbidity and identified periods when turbidity rose above ambient baseline levels, offering reef managers insights into turbidity responses to modified climate and coastal sediment delivery regimes.     

Variation in reef associated assemblages of the Lutjanidae and Lethrinidae at different distances offshore in the central Great Barrier Reef

Synopsis Fish traps were used to quantify the distribution and abundance of the Lutjanidae and Lethrinidae on reefs across the central Great Barrier Reef. The assemblages of fishes on inshore reefs were distinctive from those on midshelf and outershelf reefs. There were significantly fewer individuals of the Lutjanidae and Lethrinidae inshore and all species examined displayed significant cross-shelf changes in abundance. These significant cross shelf changes in abundance were due to an absence or low abundance of individuals of a species at one or more cross shelf locations, with many species present in only one location on the continental shelf. The genera Aprion, Lutjanus, Macolor, Symphorichthys, Symphorus, Gnathodentex, Gymnocranius, Lethrinus and Monotaxis were all characteristic of the shallow shelf waters less than 100 m. In contrast, species of the genera Paracaesio, Pristipomoides and Wattsia were characteristic of the intermediate depths (100–200 m) and the deeper outer reef slope waters in excess of 200 m were characterised by species of the genus Etelis.     

Pomphorhynchus heronensis and restricted movement of Lutjanus carponotatus on the Great Barrier Reef

Samples of Lutjanus carponotatus (Lutjanidae) from reef flat (shallow) and reef slope (deep) sites around Heron and Wistari reefs on the southern Great Barrier Reef were examined for Pomphorhynchus heronensis (Acanthocephala). Individual fish from the reef slope had 0-9 (2.6) worms as compared with 1-122 (39.6) worms for individuals from the reef flat (P < 0.0001). Other variables (year, season, size of fish) made little contribution to the variation. Reef flat and reef slope sites were separated by as little as 300 m. These results imply both that the fish have very limited local movement and that transmission of the parasite is concentrated locally.     

Benthic microalgae in coral reef sediments of the southern Great Barrier Reef,Australia

The abundance and productivity of benthic microalgae in coral reef sediments are poorly known compared with other, more conspicuous (e.g. coral zooxanthellae, macroalgae) primary producers of coral reef habitats. A survey of the distribution, biomass, and productivity of benthic microalgae on a platform reef flat and in a cross-shelf transect in the southern Great Barrier Reef indicated that benthic microalgae are ubiquitous, abundant (up to 995.0 mg chlorophyll (chl) a m^–2), and productive (up to 110 mg O₂ m^–2 h^–1) components of the reef ecosystem. Concentrations of benthic microalgae, expressed as chlorophyll a per surface area, were approximately 100-fold greater than the integrated water column concentrations of microalgae throughout the region. Benthic microalgal biomass was greater on the shallow water platform reef than in the deeper waters of the cross-shelf transect. In both areas the benthic microalgal communities had a similar composition, dominated by pennate diatoms, dinoflagellates, and cyanobacteria. Benthic microalgal populations were potentially nutrient-limited, based on responses to nitrogen and phosphorus enrichments in short-term (7-day) microcosm experiments. Benthic microalgal productivity, measured by O₂ evolution, indicated productive communities responsive to light and nutrient availability. The benthic microalgal concentrations observed (92–995 mg chl a m^–2) were high relative to other reports, particularly compared with temperate regions. This abundance of productive plants in both reef and shelf sediments in the southern Great Barrier Reef suggests that benthic microalgae are key components of coral reef ecosystems.Communicated by Environmental Editor, B.C. Hatcher     

A preliminary distributional study of fish larvae near a ribbon coral reef in the Great Barrier Reef

Fish larvae from horizontal plankton tows along a single transect near outer ribbon reefs of the Great Barrier Reef in spring 1979 and summer 1980 had persistent distributional patterns. Larvae were identified to family and divided into young (preflexion) and old (postflexion) larvae, thus giving 28 taxa abundant enough for analysis. Non-uniform larval distributions were found for 81% of the 16 reef fish taxa with non-pelagic eggs, but for only 17% of the six reef fish taxa with pelagic eggs. Most differences in larval concentration were between the lagoonal and seaward sides of the reef. Only tripterygiid larvae had highest concentration just seaward of the reef, while larvae of 12 reef and three oceanic fish taxa occurred in highest concentrations on the lagoonal side of the reef. In five taxa of reef fishes, higher larval concentrations were found in the lagoonal backreef compared with the mid-lagoon habitat; but the reverse was not found in any taxon. Eleven taxa had indeterminate distributions, (i.e. no difference in concentration between stations). Mechanisms responsible for the distribution remain unknown, but we suggest that the view which considers fish larvae to be passively-drifting particles is unjustified without more information on larval behaviour.     

Coral and sandstone reef-habitats in north-western Sri Lanka: patterns in the distribution of coral communities

Coral and sandstone reefs cover a significant part ofSri Lanka‘s continental shelf and contain incomparison unique reef structures. Despite this, reefsin this region of the northern Indian Ocean havereceived little research attention. In an attempt tobetter understand these ecosystems and their innatecharacter, this study describes the variety of reeftypes and habitats that are found in this area. Thestudy concentrated on four major reef areas: the BarReef Marine Sanctuary (BRMS), Kandakuliya Reefs,Talawila Reef, and Mampuri Reef. These reefs showedapparent differences in habitat structure in terms ofthe proportion coral cover, coral species compositionand structural complexity. Two reef types were presentwithin the continental shelf of BRMS: coral andsandstone patch-reefs. Acropora was the mostdominant coral genera however in total 118madreporarian species and 50 coral genera wererecorded in the sanctuary. Distinct habitats wereidentified within reef types including shallow reefflat, shallow patch reef, deep reef flat and Porites dome habitats for the coral-reef patcheswhile the sandstone-reef patches were divided intostructured and flat sandstone reef habitats.Kandakuliya Reef south of BRMS was by large dominatedby coral rubble. Talawila Reef and Mampuri Reef showedunique structures with the former being dominated bymassive corals and the latter mainly containingsandstone structures. In addition to factors such asbio-erosion, sedimentation, hydrodynamics, andrecruitment or colonisation processes, some reefs wereclearly under significant direct human impact whichappeared to play a dominant role in habitatstructuring. However, type and degree of humandisturbance varied among the reefs. Habitat alterationat Kandakuliya Reef was the result of intense fishingusing destructive fishing methods. Talawila Reef andMampuri Reef was also influenced by fishing activitiesthough reef structure seemed less affected. This revised version was published online in July 2006 with corrections to the Cover Date.     

Rapid vertical accretion on a ‘young’ shore-detached turbid zone reef: Offshore Paluma Shoals, central Great Barrier Reef, Australia

We report on the age structure and net accretion rates determined for an open water turbid zone reef, known as Offshore Paluma Shoals, located on the inner central Great Barrier Reef. Twenty-eight radiocarbon dates from 5 cores through the reef structure indicate that this reef began growing ~1,700 years ago and that net vertical accretion through the main phase of reef development was rapid (averaging 7.8 mm yr^?1), this despite the reef growing in highly turbid waters. The most rapid growth phases coincided with the accumulation of mud-rich terrigenoclastic sediments within the reef fabric. The study emphasises the capacity of turbid zone reefs to vertically accrete at rates matching or exceeding many clear water reefs despite seemingly detrimental water quality conditions.     

Species composition and structure of coral community of a platform reef at Bach Long Vi Island in the South China Sea

A platform reef at Bach Long Vi Island (Gulf of Tonkin in the South China Sea) was investigated for the first time. In all, 264 species of corals and their accompanying species of macrobenthos were found. Among the scleractinian corals, acroporids, poritids, and mussids dominated. Monospecific aggregations of alcyonarians Sinularia and Lobophytum and the hydroid Millepora were rather numerous. Based on its geomorphological characteristics, coral species diversity and zonal distribution, the investigated reef is comparable with ribbon and platform reefs on the Great Barrier Reef in Australia and in the Indian Ocean.     

Retention of phytoplankton and planktonic microbes on coral reefs within the Great Barrier Reef,Australia

Concentrations of phytoplankton (coccoid cychobacteria and total chlorophyll) and planktonic microrial communities (heterotropic bacteria, nanoflagellates and ciliates) were lower over leeward reef flats than over open water or reef faces, around Davies Reef and Myrmidon Reef in the central Great Barrier Reef, Australia. Concentrations of cyanobacteria, which accounted for approximately 15–50% of the carbon biomass of phytoplankton in open water, decreased from the reef face towards the leeward reef flat. Concentrations of ciliates were consistently lower at the leeward reef flat than at the reef face. For Davies Reef, the retention rates of phytoplankton and planktonic microbial communities were estimated to reach 253 gC d^-1 per 1 m strip of the reef or about 0.09 gC m^-2 d^-1. This value is virtually equal to estimates of net community production (0.1 gC m^-2 d^-1). This allocthonous organic subsidy may help maintain spositive carbon balance on both Davies and Myrmidon Reefs on the Great Barrier Reef.     

Coral reef development under naturally turbid conditions: fringing reefs near Broad Sound,Australia

Reef coring and NOAA/AVHRR imagery were used to examine differences in reef colonisation and accumulation across a gradient of increasing tidal range and turbidity. AVHRR channel-1 reflectance, which was strongly correlated with suspended sediment concentration (SSC), demonstrated that SSC is due to tidal resuspension of sediments, and increases with increasing tidal range. Underwater surveys and reef coring revealed that reef development diminishes with increasing SSC toward Broad Sound. Few reefs near Broad Sound have formed reef flats; those that have are thinner and accumulated more slowly during the Holocene. The many submerged reefs in this area represent a mixture of reef turn-ons and turn-offs. Some are probably incipient reefs in the early stages of reef growth. Others appear to be coral communities growing as thin veneers on exposed rock surfaces, rather than coral reef communities with capacity for reef-building. Still others developed reef flats earlier in the Holocene, and have since turned-off.     

Standing stock of microzooplankton on coral reefs: a preliminary study

The standing stock of microzooplankton on mid-shelf coral reefsin the central Great Barrier Reef was investigated based onsamples collected with a Niskin bottle in February and October1989 The observed net decrease in standing stock of microzooplanktonacross the reef flat suggests that a lack of information ontheir standing stock on coral reefs has led to an underestimateof the allochthonous energy input to coral reef systems.     

The large-scale influence of the Great Barrier Reef matrix on wave attenuation

Offshore reef systems consist of individual reefs, with spaces in between, which together constitute the reef matrix. This is the first comprehensive, large-scale study, of the influence of an offshore reef system on wave climate and wave transmission. The focus was on the Great Barrier Reef (GBR), Australia, utilizing a 16-yr record of wave height from seven satellite altimeters. Within the GBR matrix, the wave climate is not strongly dependent on reef matrix submergence. This suggests that after initial wave breaking at the seaward edge of the reef matrix, wave energy that penetrates the matrix has little depth modulation. There is no clear evidence to suggest that as reef matrix porosity (ratio of spaces between individual reefs to reef area) decreases, wave attenuation increases. This is because individual reefs cast a wave shadow much larger than the reef itself; thus, a matrix of isolated reefs is remarkably effective at attenuating wave energy. This weak dependence of transmitted wave energy on depth of reef submergence, and reef matrix porosity, is also evident in the lee of the GBR matrix. Here, wave conditions appear to be dependent largely on local wind speed, rather than wave conditions either seaward, or within the reef matrix. This is because the GBR matrix is a very effective wave absorber, irrespective of water depth and reef matrix porosity.     

Long-term observations of currents on the central Great Barrier Reef continental shelf

Time-series are presented of wind, sea levels, currents and temperature in the central region of the Great Barrier Reef continental shelf over the period 1980 to 1982 (inclusive). Except for occasional periods of calm weather or during the passage of tropical cyclones, the wind was alternately southwestward or northwestward, with periods of several days to several weeks. The fluctuations of the low-frequency sea level, longshore current and wind components, but not temperature, were highly coherent over distances >400 km longshore and over the shelf width. The temperature and the atmospheric pressure controlled much of the seasonal changes in the sea level. A simple model for wind-driven circulation using a non-linear bottom friction law is able to account for most of the variance of the currents with perios <20 days. An additional poleward base flow was present at all sites, probably driven by the circulation in the Coral Sea. There were also large interannual variations, possibly associated with the El Niño Southern Oscillation phenomena. These observations imply that the advection and dispersion over the Great Barrier Reef of fish eggs and larvae, coral planulae etc., and hence reef recruitment, experience considerable variability at time scales of days of years.     

Trophic significance of herbivorous macroinvertebrates on the central Great Barrier Reef

The common herbivorous macroinvertebrates on reef flats of the central Great Barrier Reef (GBR) were, in order of abundance: gastropod molluscs (Turbo and Trochus spp.); pagurid crabs; and the starfish, Linckia laevigata. The density of macroinvertebrates on Davies Reef was lowest in the thick-turf habitats at the windward reef-crest (0.6–0.9 m^–2) compared with 3.1 to 5.2 m^–2 elsewhere on the reef flat. Invertebrate grazer densities were similar on mid-shelf reef flats (mean: 2.3–3.6 m^–2) and significantly lower on outer-shelf reefs (0.3–1.0 m^–2). The ingestion rate of Turbo chrysostomus, the most abundant macroinvertebrate species, was derived from (a) faecal production and food absorption efficiency, (b) comparison of algal biomass on grazed and ungrazed natural substrata and (c) gut-filling rate and feeding periodicity in field populations. The ingestion rate of Trochus pyramis, the most common trochid and an abundant component of the macroinvertebrate fauna, was also estimated using (a). This gastropod fed continuously, whereas T. chrysostomus showed a distinct nocturnal feeding periodicity. T. chrysostomus and T. pyramis ingested daily means of 35 and 54 mgC animal^-1, respectively. Total gastropod grazing rates (mgC m^–2d^-1 in the field ranged from 11 in a thick-turf, reef-crest habitat to 144 on the open-grazed main flat. Grazing by gastropods accounted for between 0.3 and 8% of the net production of benthic algal food resources, depending on location on the reef flat. Across the whole reef flat the mean (areally-weighted) gastropod grazing rate was 6% of net production. A comparison of the relative roles of different types of grazers led to the conclusion that fishes are likely to have the greatest overall trophic impact on reefs of the central GBR. Even where macroinvertebrates are most abundant on reef flats, the yield from benthic algal communities to macroinvertebrates is estimated to be only one third of that due to fishes.Contribution no. 471 from the Australian Institute of Marine Science     

Regional and local variability in recovery of shallow coral communities: Moorea,French Polynesia and central Great Barrier Reef

Coral communities at Moorea, French Polynesia, and on the Great Barrier Reef (GBR), Australia, were severely depleted by disturbances early in the 1980s. Corals were killed by the predatory starfish Acanthaster planci, by cyclones, and/or by depressed sea level. This study compares benthic community structure and coral population structures on three disturbed reefs (Vaipahu-Moorea; Rib and John Brewer Reefs-GBR) and one undisturbed reef (Davies Reef-GBR) in 1987–89. Moorea barrier reefs had been invaded by tall macrophytes Turbinaria ornata and Sargassum sp., whereas the damaged GBR reefs were colonised by a diverse mixture of short macrophytes, turfs and coralline algae. The disturbed areas had broadly similar patterns of living and dead standing coral, and similar progress in recolonisation, which suggests their structure may converge towards that of undisturbed Davies Reef. Corals occupying denuded areas at Vaipahu, Rib and John Brewer were small (median diameter 5 cm in each case) and sparse (means 4–8 m^-2) compared to longer established corals at Davies Reef (median diameter 9 cm; mean 18 m^-2). At Moorea, damselfish and sea urchins interacted with corals in ways not observed in the GBR reefs. Territories of the damselfish Stegastes nigricans covered much of Moorea's shallow reef top. They had significantly higher diversity and density of post-disturbance corals than areas outside of territories, suggesting that the damselfish exerts some influences on coral community dynamics. Sea urchins on Moorea (Diadema setosum Echinometra mathaei, Echinotrix calamaris) were causing widespread destruction of dead standing coral skeletons. Overall, it appears that the future direction and speed of change in the communities will be explicable more in terms of local than regional processes.