Fish Colonization of an Artificial Reef in the Gulf of Elat, Northern Red Sea

A small near shore artificial reef was constructed in the Gulf of Elat, northern Red Sea at a depth of 22–24m. The colonization of fishes was monitored for a period of 728 days and a total of 94 species was recorded. Colonization was initially rapid. The first species to appear were Dascyllus trimaculatus and Chaetodon paucifasciatus (day 2). In the first seven months, a gradual increase in the number of species was observed, after which it leveled off. Subsequently, a reduction in the number of individuals increased diversity of the community, as measured by the Shannon & Weaver index. The low complexity of the major components of the artificial reef, in addition to its location on a muddy, silty substrate, resulted in a constant cover of fine grain particles which presumably discouraged settlement of invertebrates and small cryptic fish species on the artificial reef.     

The significance of variable and density-independent post-recruitment mortality in local populations of reef fishes

Abstract In this paper I focus on how post-settlement mortality may modify initial patterns of settlement in reef fish. Infrequent recruitment surveys may underestimate the role of early post-settlement mortality as most mortality in reef fishes occurs shortly after settlement. Consequently, results from infrequent recruitment surveys shed little light on the mechanisms producing patterns of abundance because these surveys ignore early post-settlement mortality. Variation in density-independent mortality may be a common mechanism that can prevent a positive relationship between larval settlement and subsequent population abundance. Although density-dependent mortality is the most commonly recognized mechanism that can disrupt the correlation between settlement and adult abundance, density-independent mortality’ can also destroy this correlation if the variance associated with post-settlement mortality is greater than variance in settlement. This point is illustrated with a simulation model in which I modelled two populations: a piscivorous fish population that was recruitment-limited with constant mortality, and a prey population that had variable recruitment and mortality that was a function of the size of the predator population. The results of this model indicate that even when mortality of prey is density-independent, predation can determine prey abundance when variation in piscivore recruitment is high relative to prey recruitment. Thus, initial patterns of prey settlement can be modified by a recruitment-limited predator population.     

基因组学技术在生物多样性保护研究中的应用

在分子生物学、细胞生物学、微生物学、遗传学等学科的推动下, 生物多样性研究从仅关注宏观表型的博物学, 迅速演化为涵盖生态系统、物种和遗传多样性等多个维度的综合性生命科学。组学技术, 尤其是DNA测序技术的更新和发展, 使获取DNA序列所需的成本大幅下降, 促进了近年来其在生物多样性研究中取得的一系列令人瞩目成就。本文将从物种水平的遗传多样性和群落水平的物种多样性两个层面总结和介绍与DNA相关的组学技术在生物多样性研究中的一些创新和应用。其中, 物种水平主要是总结单一个体的基因组和单物种多个体在时空多个维度上的群体遗传研究; 而群落水平的物种多样性层面主要总结现有的分子鉴定技术(metabarcoding, eDNA, iDNA等), 以及上述新技术在群落多样性评估、旗舰保护物种监测以及物种间相互作用关系等研究中的应用。     

Diversity,recruitment and competition on island shores at south-polar localities compared with lower latitudes: encrusting community examples

Comparisons of temperate and tropical shores have yielded considerable debate as to whether the former really are less benign, diverse and structured by different ecological processes. Studies of comparable boulder communities have shown high within region variability. Equivalent polar assemblages, from island shores compared here, show much reduced within region variability and considerably reduced numbers of phyla and species encrusting boulders. The rate of colonisation (compared from settlement panel studies) was an order of magnitude higher in warmer water, but did vary with isolation (near vs offshore islands). Comparison of the most ubiquitous taxon, the bryozoans, between polar and non polar sites shows a decrease in the proportion of inter-specific competition, indeterminate competitor (species) pairs and incidence of tied outcomes in competition. These three parameters all increased with depth at the localities studied, whilst no obvious influence of isolation was found.     

不同种植方式下转Bt基因水稻对稻田节肢动物群落的影响

如何设置庇护所使其在转基因作物靶标害虫抗性治理中达到更高的效率,就此,本文研究了Bt水稻与非Bt水稻不同种植方式对Bt稻田节肢动物群落的影响。结果表明,整体上,块块种植和列列混栽方式对Bt稻田节肢动物群落多样性、均匀度和优势集中性无显著影响;但混栽方式下的Bt稻田节肢动物群落个体密度和物种丰富度显著偏低。在水稻发育中期,混栽方式下Bt稻田节肢动物群落季节动态与块块种植方式下的明显不同,其多样性、均匀度、优势集中性指数均类似于同种植方式下非Bt稻上各参数的季节动态。混栽方式下的庇护所效应更明显。     

Metabarcoding技术在植物鉴定和多样性研究中的应用

目前植物学研究已进入后植物志时代,iFlora的实现需要以传统植物分类学及相关研究为基础,整合基于高通量测序的DNA条形码（DNAbareoding）技术并开发便携式快速鉴定仪器及构建信息平台。传统植物鉴定多基于形态学分类,而近年来快速发展的DNA条形码快速鉴定技术被各界分类学家认可,在植物鉴定中也被广泛应用。但DNA条形码技术仍存在一些问题亟待解决,如种的鉴定需要多个条形码的解析、Sanger测序平台无法处理混合样品。本文介绍了传统植物分类技术和DNA条形码技术在植物研究中的应用和遇到的瓶颈;并重点介绍了基于高通量测序的metabarcoding技术在植物鉴定及多样性研究中的应用及前景,及其与iFlora的关系。