Diet shapes cold-water corals bacterial communities

Different cold-water coral (CWC) species harbour distinct microbial communities and the community composition is thought to be linked to the ecological strategies of the host. Here we test whether diet shapes the composition of bacterial communities associated with CWC. We compared the microbiomes of two common CWC species in aquaria, Lophelia pertusa and Madrepora oculata, when they were either starved, or fed respectively with a carnivorous diet, two different herbivorous diets, or a mix of the 3. We targeted both the standing stock (16S rDNA) and the active fraction (16S rRNA) of the bacterial communities and showed that in both species, the corals' microbiome was specific to the given diet. A part of the microbiome remained, however, species-specific, which indicates that the microbiome's plasticity is framed by the identity of the host. In addition, the storage lipid content of the coral tissue showed that different diets had different effects on the corals' metabolisms. The combined results suggest that L. pertusa may be preying preferentially on zooplankton while M. oculata may in addition use phytoplankton and detritus. The results cast a new light on coral microbiomes as they indicate that a portion of the CWC's bacterial community could represent a food influenced microbiome.     

Aboriginal Burning Regimes and Hunting Strategies in Australia’s Western Desert

A large complement of Australia’s biotic web is dependent on a regular regime of burning, much of which is the result of firing by humans. Many researchers have suggested that moderate and repeated burning by Aborigines is a tool designed to enhance hunting efficiency. We present the first test of this with data on contemporary Martu Aboriginal burning and hunting strategies in the arid spinifex savanna of the Western Desert during the cool-dry season (May–August). Our results show a strong positive effect of mosaic burning on the efficiency of hunting burrowed prey (primarily conducted by women), but not larger mobile prey (primarily conducted by men). We suggest that regular anthropogenic disturbance through burning in Australia’s Western Desert may be important for sustaining biodiversity and habitat mosaics, but these effects may be maintained primarily by women’s hunting of burrowed game. We discuss the implications of these results for understanding variability in hunting strategies, issues of conservation, and land management policy for the region.     

Film Reviews

Book reviewed in this article:
Emu Ritual at Ruguri. Filmed in 1966 and 1967 by R oger S andall , for the Australian Institute of Aboriginal Studies with N icholas P eterson as consultant.
Walbiri Ritual at Ngama. Filmed in 1966 by R oger S andall , for the Australian Institute of Aboriginal Studies with N icholas P eterson as consultant.     

Diet traditions in wild orangutans

This study explores diet differences between two populations of wild Bornean orangutans (Pongo pygmaeus wurmbii) to assess whether a signal of social learning can be detected in the observed patterns. The populations live in close proximity and in similar habitats but are separated by a river barrier that is impassable to orangutans in the study region. We found a 60% between‐site difference in diet at the level of plant food items (plant species–organ combinations). We also found that individuals at the same site were more likely to eat the same food items than expected by chance. These results suggest the presence of diet (food selection) traditions. Detailed tests of three predictions of three models of diet acquisition allowed us to reject a model based on exclusive social learning but could not clearly distinguish between the remaining two models: one positing individual exploration and learning of food item selection and the other one positing preferential social learning followed by individual fine tuning. We know that maturing orangutans acquire their initial diet through social learning and then supplement it by years of low‐level, individual sampling. We, therefore, conclude that the preferential social learning model produces the best fit to the geographic patterns observed in this study. However, the very same taxa that socially acquire their diets as infants and show evidence for innovation‐based traditions in the wild paradoxically may have diets that are not easily distinguished from those acquired exclusively through individual learning. Am J Phys Anthropol 143:175–187, 2010. © 2010 Wiley‐Liss, Inc.     

Aboriginal fire management in south-eastern Australia: aims and frequency

Aim To examine the purpose of burning by Aborigines of south‐eastern Australia. Location South‐eastern Australia. Methods A survey of the ethnography and ecology relating to Aboriginal fire. Results Ecologists have only recently acknowledged the past history of Aboriginal burning. Its purpose was to maximise plant and animal food resources. Main Conclusions The seasonal timing and frequency of Aboriginal burning is embedded in various ecosystems.     

内蒙古达赉湖自然保护区狼食性的季节性变化

2004年7月到2005年6月在达赉湖自然保护区收集狼(Canis lupus)的粪便,采用粪便分析法研究食性的季节性变化。由于野生有蹄类动物严重匮乏,家畜已成为该地区狼的主要食物:草青期的频率为74.7%,相对生物量达到94.4%;草枯期的频率为67.6%,相对生物量达到91.8%。该地区的家畜主要有绵羊、山羊、牛和马,狼食性的季节性变化主要与家畜的放牧方式有关。兔类和小型啮齿类动物是狼次要选择的食物。该地区鸟类资源丰富,是狼较稳定的食物(草青期6.2%,草枯期7.8%)。为降低该地区狼对家畜的捕食,建议管理部门合理控制狼的数量,引入牧羊犬及加强对牛、马的管理。     

Provisioning of Game Meat to Rural Communities as a Benefit of Sport Hunting in Zambia

Sport hunting has reportedly multiple benefits to economies and local communities; however, few of these benefits have been quantified. As part of their lease agreements with the Zambia Wildlife Authority, sport hunting operators in Zambia are required to provide annually to local communities free of charge i.e., provision a percentage of the meat obtained through sport hunting. We characterized provisioning of game meat to rural communities by the sport hunting industry in Zambia for three game management areas (GMAs) during 2004–2011. Rural communities located within GMAs where sport hunting occurred received on average > 6,000 kgs per GMA of fresh game meat annually from hunting operators. To assess hunting industry compliance, we also compared the amount of meat expected as per the lease agreements versus observed amounts of meat provisioned from three GMAs during 2007–2009. In seven of eight annual comparisons of these GMAs, provisioning of meat exceeded what was required in the lease agreements. Provisioning occurred throughout the hunting season and peaked during the end of the dry season (September–October) coincident with when rural Zambians are most likely to encounter food shortages. We extrapolated our results across all GMAs and estimated 129,771 kgs of fresh game meat provisioned annually by the sport hunting industry to rural communities in Zambia at an approximate value for the meat alone of >US$600,000 exclusive of distribution costs. During the hunting moratorium (2013–2014), this supply of meat has halted, likely adversely affecting rural communities previously reliant on this food source. Proposed alternatives to sport hunting should consider protein provisioning in addition to other benefits (e.g., employment, community pledges, anti-poaching funds) that rural Zambian communities receive from the sport hunting industry.     

Changes in the Rumen Epimural Bacterial Diversity of Beef Cattle as Affected by Diet and Induced Ruminal Acidosis

Little is known about the nature of the rumen epithelial adherent (epimural) microbiome in cattle fed different diets. Using denaturing gradient gel electrophoresis (DGGE), quantitative real-time PCR (qPCR), and pyrosequencing of the V3 hypervariable coding region of 16S rRNA, epimural bacterial communities of 8 cattle were profiled during the transition from a forage to a high-concentrate diet, during acidosis, and after recovery. A total of 153,621 high-quality gene sequences were obtained, with populations exhibiting less taxonomic variability among individuals than across diets. The bacterial community composition exhibited clustering (P < 0.03) by diet, with only 14 genera, representing >1% of the rumen epimural population, differing (P ≤ 0.05) among diets. During acidosis, levels of Atopobium, Desulfocurvus, Fervidicola, Lactobacillus, and Olsenella increased, while during the recovery, Desulfocurvus, Lactobacillus, and Olsenella reverted to levels similar to those with the high-grain diet and Sharpea and Succinivibrio reverted to levels similar to those with the forage diet. The relative abundances of bacterial populations changed during diet transition for all qPCR targets except Streptococcus spp. Less than 5% of total operational taxonomic units (OTUs) identified exhibited significant variability across diets. Based on DGGE, the community structures of epithelial populations differed (P ≤ 0.10); segregation was most prominent for the mixed forage diet versus the grain, acidotic challenge, and recovery diets. Atopobium, cc142, Lactobacillus, Olsenella, RC39, Sharpea, Solobacterium, Succiniclasticum, and Syntrophococcus were particularly prevalent during acidosis. Determining the metabolic roles of these key genera in the rumens of cattle fed high-grain diets could define a clinical microbial profile associated with ruminal acidosis.     

Parasitic flies (Conopidae, Diptera) may be important stress factors for the ergonomics of their bumblebee hosts

Bumblebees harbour a wide range of parasitic organisms that attack all stages of their life cycles (reviews in Postner, 1951; Pouvreau, 1973, 1974; Alford, 1975; Kistner, 1982). Among them, conopid flies (Conopidae, Diptera) are particularly interesting because they attack foraging bumblebees which are handling flowers, or even on the wing (Frison, 1926; Cumber, 1949; Postner, 1951; Howell, 1967; Askew, 1971). A single egg is attached to (Frison, 1926; Plath, 1934; Cumber, 1949) or inserted into (DeMeijre, 1904; Howell, 1967) the host's abdomen, where the larva hatches and feeds on haemolymph and internal organs. Within 6–10 days the larva passes through three recognizable stages (Pouvreau, 1974) before the fly pupates in situ within the abdomen. The host bee dies shortly before the parasite pupates (Postner, 1951; Smith, 1966) and the parasite overwinters in its puparium; the adult fly then emerges in early summer (Frison, 1926; Townsend, 1935; Cumber, 1949; Postner, 1951). Conopid flies as parasites of bumblebees are known from all major habitats where the hosts occur (e.g. Kröber, 1939; Smith, 1966). However, the effect of parasitism on distribution and abundance of bumblebees is not known. In this preliminary note we have estimated degrees of infestation and concomitant reduction of life span in affected workers. The results are compared with literature reports on infestation levels in Europe.     

Long-term changes of Copepoda community (1957-1996) in a subtropical Chinese lake stocked densely with planktivorous filter-feeding silver and bighead carp

In contrast to the relatively well documented impact of particulate-feedingfish on zooplankton communities, little attention has been devotedto the impact of filter-feeding fish. Filter-feeding silverand bighead carp are the most intensively cultured fish speciesin Asia and comprise much of the production of Chinese aquaculture.However, little information is known about the impact of eitherfish on the zooplankton community. Long-term changes in theCopepoda community (1957–1996) were studied at two samplingstations of a subtropical Chinese lake (Lake Donghu) dominatedby silver and bighead carp. For both calanoids and cyclopoids,the littoral station (I) was much more resource profitable thanthe pelagic station (II). There has been a tremendous increasein the annual fish catch over the past 30 years due to the increasedstocking with fingerlings of the two carp species. There wasa notably higher fish density at Station I than at Station II.Cyclopoid abundance was notably higher at Station I than atStation II during the 1950s to the 1980s, while the reversebecame true in the 1990s. This is probably because when fishabundance increased to an extremely high level, the impact offish predation on the cyclopoids became more important thanthat of food resources at the littoral station. At both stations,cyclopoid abundance was relatively low in spite of the presenceof abundant prey. Similarly, calanoid density did not differsignificantly between the two stations in the 1950s and 1960s,but was significantly lower at Station I than at Station IIduring the 1980s and 1990s. Such changes are attributed to thegradient of fish predation between the stations and an increasingpredation pressure by the fish. The increased fish predationalso correlated with a shift in summer-dominant calanoids fromlarger species to smaller ones. In conclusion, the predaceouscyclopoids are affected by fish predation to a much lesser extentthan the herbivorous calanoids, and therefore increased predationby filter-feeding fish results in a definite increase in thecyclopoid/calanoid ratio. Predation by filter-feeding fish hasbeen a driving force in shaping the copepod community structureof Lake Donghu during the past decades.     

Diet of chimpanzees (Pan troglodytes schweinfurthii) at Ngogo, Kibale National Park, Uganda, 1. Diet composition and diversity

Chimpanzees (Pan troglodytes) are ecologically flexible omnivores with broad diets comprising many plant and animal foods, although they mostly eat fruit (including figs). Like other ecologically flexible nonhuman primates (e.g., baboons, Papio spp.) with broad diets, their diets vary across habitats. Much data on diets come from short studies that may not capture the range of variation, however, and data are scant on variation within habitats and populations. We present data on diet composition and diversity for chimpanzees at Ngogo, in Kibale National Park, Uganda, collected over a 15-year period, with a focus on the plant components of the diet. We compare Ngogo data to those on chimpanzees at the nearby Kibale site of Kanyawara, on other chimpanzee populations, and on some other frugivorous-omnivorous primates. Results support the argument that chimpanzees are ripe fruit specialists: Ngogo chimpanzees ate a broad, mostly fruit-based diet, feeding time devoted to fruit varied positively with fruit availability, and diet diversity varied inversely with fruit availability. Comparison of Ngogo and Kanyawara shows much similarity, but also pronounced within-population dietary variation. Chimpanzees fed much more on leaves, and much less on pith and stems, at Ngogo. Figs accounted for somewhat less feeding time at Ngogo, but those of Ficus mucuso were quantitatively the most important food. This species is essentially absent at Kanayawara; its abundance and high productivity at Ngogo, along with much higher abundance of several other important food species, help explain why chimpanzee community size and population density are over three times higher at Ngogo. High inter-annual variation at Ngogo highlights the value of long-term data for documenting the extent of ecological variation among chimpanzee populations and understanding how such variation might affect population biology and social dynamics.     

Diet of Adult and Nestling Scarlet Macaws in Southwest Belize,Central America1

Scarlet Macaw diet was determined during the breeding season of February–June 1998. Macaws were primarily granivorous, exhibiting a narrow diet during the dry season, with low variety of food items in adult and nestling diets. Seeds of Cnidoscolus spp. and Schizolobium parahybum, tree species characteristic of floodplain forest, were predominant in nestling diets, and may provide protein‐rich food resources. River floodplains provided important nest sites and food resources for Scarlet Macaws during the breeding season.     

FOOD HABITS OF WILDEBEEST, ZEBRA, HARTEBEEST AND CATTLE IN KENYA MASAILAND

A study was conducted of grass selectivity shown by four herbivores on open range lands of Kenya Masailand. At four seasons over one year, wildebeest, zebra and kongoni (Coke's hartebeest) were taken. Stomach materials and faeces were sampled from each animal. Faecal samples were collected from cattle that had been grazing in the same area. Simultaneously, vegetation availability assessments were made. A comparison of techniques for determining the food selectivity indicates that faecal and stomach-content analyses provide similar results when the diets are almost entirely grass. The selectivity exhibited by the four herbivores was determined by faecal analyses. Three grass species were preponderant in all diets as well as in the available menu. In comparing the selectivity shown for the three dominant grasses there is a high degree of similarity even though statistical differences are demonstrated. All animals favoured Themeda triandra over Pennisetum mezianum and Digitaria macroblephara. Kongoni displayed the highest degree of selectivity and cattle and zebra had the greatest similarity in diets. Each animal species had a wide spectrum of grasses in their diets: these contained a greater number of species during the drier seasons than during the rainy seasons. Wild animals had a greater diet variation between seasons than did cattle, the diet of the latter remaining much more consistent than the combination of available grasses.     

农业区游牧民族饮食文化的滞后性——基于大同东信广场北魏墓群人骨的稳定同位素研究

不同地域的人群具有不同的饮食传统和饮食文化。然而,当人们持续不断的直接或间接接触时,一方或双方原有的饮食文化将会产生变化,如拓跋鲜卑的饮食文化就经历了从游牧向农业的转变。本文对山西大同东信广场北魏墓群26例人骨进行了C、N稳定同位素分析,结果 (δ~(13)C值为-11.5±2.7‰,n=26;δ~(15)N值为9.8±1.2‰,n=26)显示,先民的食物类型差异较大,并包含大量的肉食资源。研究表明,以C_3类食物为主的先民主要放牧或狩猎,以C_4类食物为主的先民主要以种植粟、黍等C_4型农作物喂养家畜。大同东信广场北魏墓群人群中两种不同饮食传统的存在,显示游牧民族新的饮食习惯(以粟作农业产品为食)的形成滞后性于北魏政权的建立,这可能与气候变冷及他们的排斥有关。     

Comparative Analysis of Microbial Profiles in Cow Rumen Fed with Different Dietary Fiber by Tagged 16S rRNA Gene Pyrosequencing

The ruminal microbiome of cattle plays an important role not only in animal health and productivity but also in food safety and environment. Microbial profiles of rumen fluid obtained from dairy cows fed on three different fiber/starch diet compositions were characterized. Tagged 16S rRNA gene pyrosequencing and statistical analysis revealed that the dominant ruminal bacteria shared by all three sample groups belonged to phyla Bacteroidetes, Firmicutes, and Proteobacteria. However, the relative abundance of these bacterial groups was markedly affected by diet composition. In animals fed with a high fiber diet, the fibrolytic and cellulolytic bacteria Lachnospiraceae, Ruminococcaceae, and Fibrobacteraceae were found in highest abundance compared with animals fed other diets with lower fiber content. The polysaccharide-degrading Prevotellaceae and Flavobacteriaceae bacteria were most abundant in the rumen of cows fed on diet with the highest starch content. These data highlight the ruminal microbiome’s ability to adapt to feed composition and also provide a basis for the development of feed formulation systems designed to improve livestock productivity.     

Population studies and reproduction of the feral cattle (Bos taurus) of Amsterdam Island, Indian Ocean

Amsterdam Island has supported a population of feral cattle since 1871. In 1987 a fence was erected across the island, and in 1988 and 1989 the whole population ( n = 1059) living south of the fence (study area) was removed. Nine hundred and sixty one culls were analysed. Age of calves indicated that reproduction was seasonal, as 78% of births occurred within four months. Age at first calving ranged from 2–4 years. An estimation of the fertility (rate of conception) was 0-73 foetuses per cow per year.
In the north part of the study area, 50–80 males have been killed for beef each year since 1951. The effect of hunting was analysed and a zone where cattle had been free from human interference was defined. In this zone sex ratio was biased towards males (252 M:201 F), owing to female biased mortality in individuals older than three years. The cause of the biased mortality might be a differential use of food resources between sexes.     

Bias in Diet Determination: Incorporating Traditional Methods in Bayesian Mixing Models

There are not “universal methods” to determine diet composition of predators. Most traditional methods are biased because of their reliance on differential digestibility and the recovery of hard items. By relying on assimilated food, stable isotope and Bayesian mixing models (SIMMs) resolve many biases of traditional methods. SIMMs can incorporate prior information (i.e. proportional diet composition) that may improve the precision in the estimated dietary composition. However few studies have assessed the performance of traditional methods and SIMMs with and without informative priors to study the predators’ diets. Here we compare the diet compositions of the South American fur seal and sea lions obtained by scats analysis and by SIMMs-UP (uninformative priors) and assess whether informative priors (SIMMs-IP) from the scat analysis improved the estimated diet composition compared to SIMMs-UP. According to the SIMM-UP, while pelagic species dominated the fur seal’s diet the sea lion’s did not have a clear dominance of any prey. In contrast, SIMM-IP’s diets compositions were dominated by the same preys as in scat analyses. When prior information influenced SIMMs’ estimates, incorporating informative priors improved the precision in the estimated diet composition at the risk of inducing biases in the estimates. If preys isotopic data allow discriminating preys’ contributions to diets, informative priors should lead to more precise but unbiased estimated diet composition. Just as estimates of diet composition obtained from traditional methods are critically interpreted because of their biases, care must be exercised when interpreting diet composition obtained by SIMMs-IP. The best approach to obtain a near-complete view of predators’ diet composition should involve the simultaneous consideration of different sources of partial evidence (traditional methods, SIMM-UP and SIMM-IP) in the light of natural history of the predator species so as to reliably ascertain and weight the information yielded by each method.     

青藏高原地区气候图解数据集

气候图解可以直观反映气象台站基本信息和气温、降水等气象数据,是研究植被与气候关系的有效方式。为便于了解青藏高原不同植被区域气候特征,进一步认识青藏高原植被与气候关系,该文基于1951–1980年与1981–2010年青藏高原地区国家地面气象台站基本信息和各30年平均观测数据,依据《中国植被》所述标准制作每个气象台站的气候图解。论文提供了青藏高原地区主要台站气候图解集,包括两个30年时间段共计205幅图解。研究表明:(1)青藏高原地区气温和降水总体水平偏低,前后30年年平均气温和年降水量整体呈上升趋势;(2)青藏高原地区各气象台站记录值随植被区域不同表现出较大差异。虽然青藏高原西部地区的气象台站数量很少,但该数据集仍涵盖了高原面上的不同植被地带,可有效运用于高原植被与气候关系研究,为展示高原气候环境等提供便利。     

Diet switching in a generalist mammalian folivore: fundamental to maximising intake

Generalist mammalian herbivores exploit a diverse diet. A generalised feeding strategy utilises a mixed diet to obtain a range of nutrients and to reduce the detoxication load of similar groups of plant secondary metabolites (PSMs). There is limited research investigating how mammalian herbivores achieve this dietary mixing in their daily foraging activities. We investigated the patterns of, and behaviours associated with, dietary mixing in a generalist mammalian folivore, the common brushtail possum (Trichosurus vulpecula). Possums were offered foliage of two eucalypt species (Eucalyptus globulus and E. regnans) as either (a) Full choice: both species offered for 8 h; (b) Restricted choice: both species offered for 2×2 h blocks; (c) G–R no choice: E. globulus offered for the first 4 h, E. regnans offered for next 4 h; and (d) R–G no choice: E. regnans offered for first 4 h, E. globulus offered for next 4 h. We hypothesised that possums would maximise intake on the Full choice diet, where time availability was greatest in combination with a choice of foliage. We also hypothesised that diet switching, defined as the frequency of changing between food types while feeding, would play a fundamental role in maximising intake. Possums achieved maximum intake on the Full choice diet and minimum intake on the No choice diets. Although intake was similar between the Restricted choice and No choice diets, possums achieved this intake in half the amount of time when able to switch regularly between foliage on the Restricted choice diet. We conclude that a generalist herbivore’s ability to effectively switch diets when foraging is fundamental to maximising intake. Hence, the degree of plant heterogeneity in an environment, and the spatial scale at which it occurs, may affect an herbivore’s foraging decisions and, ultimately, influence its foraging efficiency.     

黄海中部高眼鲽的摄食及随体长的变化

对2004年1月-2005年10月在黄海中部采集的622尾高眼鲽样品的胃含物进行分析.结果表明：高眼鲽摄食的食物种类包括11类38种,其中甲壳类和瓣鳃类为优势饵料类群,共占食物相对重要性指数百分比的99%;食物中的优势饵料种类为太平洋磷虾、脊腹褐虾和樱蛤.与20世纪80年代相比,黄海高眼鲽的摄食强度下降,食物组成发生了较大的变化;鱼类不再是优势饵料类群,鳀鱼在食物中所占的比例明显下降.通过聚类分析和列联表检验等方法对高眼鲽摄食随体长的变化进行研究,结果表明：体长在51～370 mm范围内的高眼鲽的摄食强度没有显著的体长变化,但不同体长组摄食的食物种类有一定差异.＜119 mm的主要以磷虾类和底层虾类为食;体长在120～199 mm的除以磷虾类和底层虾类为主要食物外,还摄食相当比例的瓣鳃类和鱼类;＞200 mm的则主要摄食底层虾类和鱼类,磷虾类所占比例减小.