Identifying plants under natural gas micro-leakage stress using hyperspectral remote sensing

Natural gas is an important clean energy source. The demand for, and consumption of, natural gas have been increasing in recent years. Slight natural gas leakage can occur during transportation, which can have a negative impact on the environment, economy, and safety. However, it is relatively difficult to directly detect natural gas microleakage. Hyperspectral remote sensing technology is useful for analyzing the spectral characteristics of vegetation near leakage areas, thereby indirectly obtaining leakage information. In this study, a field experiment was designed to simulate natural gas leakage from an underground pipeline and gas stress on three plant species. The canopy spectral reflectance of the vegetation throughout the growth period of the plants was collected and analyzed. Variational mode decomposition was then used to decompose the spectra. Based on the stress distance (SD) and intrinsic mode functions, it was found that the second intrinsic mode function, with a decomposition scale of 32, was sensitive to gas stress. According to the results of SD, the bands (616 and 829 nm) sensitive to natural gas stress for the three plant species were extracted, and the variational mode decomposition index (VMDI) was constructed. The Jeffries–Matusita distance (JMD) was used to quantitatively evaluate the VMDI index and three indices were used to evaluate the ability to recognize stress. It was found that the index proposed in this study could identify stressed wheat and grass one week earlier than other indices and could better identify stressed vegetation throughout the phenological cycle (JMD > 1.8). The results show that the proposed index can be used as a reliable method to identify natural gas-stressed plants, and that hyperspectral technology is promising for detecting the location of natural gas leaks from underground pipelines.     

Applications of chlorophyll fluorescence: In photosynthesis research,stress physiology,hydrobiology and remote sensing

Book reviews

Applications of chlorophyll fluorescence: In photosynthesis research, stress physiology, hydrobiology and remote sensingH.K. Lichtenthaler (Ed.), Proceedings of the International Chlorophyll Fluorescence Symposium, 6–8 June 1988. Dordrecht: Kluwer Academic Publishers, 1988. xiv + 366 pages. £54. ISBN 90-247-3787-7     

Monosaccharide transporters in plants: structure, function and physiology

Monosaccharide transport across the plant plasma membrane plays an important role both in lower and higher plants. Algae can switch between phototrophic and heterotrophic growth and utilize organic compounds, such as monosaccharides as additional or sole carbon sources. Higher plants represent complex mosaics of phototrophic and heterotrophic cells and tissues and depend on the activity of numerous transporters for the correct partitioning of assimilated carbon between their different organs. The cloning of monosaccharide transporter genes and cDNAs identified closely related integral membrane proteins with 12 transmembrane helices exhibiting significant homology to monosaccharide transporters from yeast, bacteria and mammals. Structural analyses performed with several members of this transporter superfamily identified protein domains or even specific amino acid residues putatively involved in substrate binding and specificity. Expression of plant monosaccharide transporter cDNAs in yeast cells and frog oocytes allowed the characterization of substrate specificities and kinetic parameters. Immunohistochemical studies, in situ hybridization analyses and studies performed with transgenic plants expressing reporter genes under the control of promoters from specific monosaccharide transporter genes allowed the localization of the transport proteins or revealed the sites of gene expression. Higher plants possess large families of monosaccharide transporter genes and each of the encoded proteins seems to have a specific function often confined to a limited number of cells and regulated both developmentally and by environmental stimuli.     

Estimating leaf photosynthesis of C3 plants grown under different environments from pigment index,photochemical reflectance index,and chlorophyll fluorescence

Photosynthesis Research - Photosynthetic rates vary depending on growth conditions, even within species. Remote sensing techniques have a great potential to predict the photosynthetic rates of...     

Long-term ecological dynamics: reciprocal insights from natural and anthropogenic gradients

Many ecological dynamics occur over time-scales that are well beyond the duration of conventional experiments or observations. One useful approach to overcome this problem is extrapolation of temporal dynamics from spatial variation. We review two complementary variants of this approach that have been of late increasingly employed: the use of natural gradients to infer anthropogenic effects and the use of anthropogenic gradients to infer natural dynamics. Recent studies have considered a variety of naturally occurring gradients associated with climate, CO2, disturbance and biodiversity gradients, as well as anthropogenic gradients such as those created by biological invasions, habitat fragmentation and land abandonment. These studies show that natural gradients are useful in predicting long-term consequences of human-induced environmental changes, whereas anthropogenic gradients are helpful in inferring the mechanisms behind natural dynamics because covarying factors are often more clearly understood in anthropogenic gradients than in natural gradients. We classify these studies into several categories, each with different strengths and weaknesses, and outline how the limitations can be overcome by combining the gradient-based approach with other approaches. Overall, studies reviewed here demonstrate that the development of basic ecological concepts and the application of these concepts to environmental problems can be more effective when conducted complementarily than when pursued separately.     

A portable, microprocessor operated instrument for measuring chlorophyll fluorescence kinetics in stress physiology

A portable instrument for measuring chlorophyll fluorescence induction kinetics is described and examples of measurements are given. The instrument is centered around a statistically-mixed bifurcated optical fiber. One fiber branch guides the actinic light to the sample, whereas the other branch carries the emitted chlorophyll fluorescence to the photodetector. Scattered actinic light is cut out from the detector by a red interference filter. The instrument measures fast as well as slow fluorescence induction kinetics, but is particularly well designed for analyzing fast kinetics. The high time resolution and strong, variable actinic light mean that both F_o (non-variable fluorescence) and F_m (maximal fluorescence at the P-peak) are well defined. A built in microprocessor unit with attached memory stores the fluorescence induction curve and calculates key fluorescence parameters such as F_o, F_m, F_v (variable fluorescence equals F_m?F_o), F_v/F_m (the photochemical efficiency of photosystem II) and t_1/2 (half rise time from F_o, to F_m). These values are digitally displayed after each recording and they (or the whole induction curve) can be stored in a memory and later retrieved. Because of a flexible setting of the instrument it can be used with high accuracy both for optically thick leaves and for diluted suspensions of algae or chloroplasts. A simple, light weight clamp cuvette for dark adaptation of leaves has been developed. It is equipped with a gate allowing the optical fiber to be inserted without daylight reaching the dark adapted portion of the leaf. The instrument has been developed for rapid monitoring of changes in activities and organization of the photosynthetic apparatus in vivo when plants are exposed to environmental stress both in the field and in the laboratory. Examples of measurements are given for differently treated leaves of Pinus sylvestris, Salix sp., Betula verrucosa, Zea mays, Epilobium angustifo-lium and for chloroplast thylakoids isolated from Spinacia oleracea.     

激素对水生植物生理生态的影响及其应用

激素代谢是植物传导信号和调节生长发育的重要途径.陆地植物五大类激素在水生植物中也有分布,尽管近年来环境污染导致水生植物衰退的问题日益得到重视,但水生植物激素的研究和应用却远滞后于陆生植物.在总结了近年来激素类物质在水生植物中的研究成果,分别从激素的种类、激素的生理生态作用、激素生物合成的途径及作用的部位和机制、激素之间的相互作用.激素类物质在实验和实践上的应用等进行了全面阐述,指出了水生植物激素生理生态学研究的发展方向,从利用激素类物质诱导水生植物抗性的表达,提高抗逆性,恢复水生植被,以及研究和开发适于水生植物生产和管理的生长调节剂等方面,就水生植物激素的进一步研究和应用进行了探讨.     

Concepts of plant biotic stress. Some insights into the stress physiology of virus-infected plants, from the perspective of photosynthesis

The consequences of biotic stress have been poorly understood, partly because its application is difficult to control and partly because its physiological consequences are highly variable. Many plant viruses are recognised on the basis of leaf symptoms that depend on localised changes to chloroplast structure and function. This paper reviews recent progress in understanding early interactions between plant viruses and the photosynthetic apparatus, using chlorophyll fluorescence analysis of novel, defined algal-virus systems and using high resolution imaging of chlorophyll fluorescence and other photosynthetic processes in higher plant systems. We then consider the consequences of viral effects on photosynthetic functioning for whole plants and populations with an emphasis on the potential interactions with other environmental factors. Early responses indicated by increase in both non-photochemical quenching of fluorescence and increased reduction state of the primary electron transport acceptor Q_A suggest that, not surprisingly, both photoprotective and photoinhibitory processes contribute to the accelerated local demise of the photosynthetic apparatus and symptom development. In other cases, localised accumulations of carbohydrate and source-sink imbalance following infection may inhibit gene expression, leading to altered levels of chloroplast protein complexes and enzymes of photosynthetic metabolism coincident with symptom development. Recent experiments suggest that much of the variability in plant responses to biotic stress may result from interactions with other environmental factors, such as light intensity and nutrition. Experiments suggest that virus infections may have greater effects on fitness and competitive ability in low N, high light environments than in shaded, high nutrient conditions. Some ecological implications of these observations are discussed.     

基于挺水植物高光谱信息的再生水总氮含量估测——以北京市门城湖湿地公园为例

高光谱信息是探测植物体内氮素含量状况的重要手段,而植物体中的氮素与水体含氮量息息相关.本研究区为以再生水为主要补给水水源的北京门城湖湿地公园,通过获取区内典型的再生水氮净化挺水植物芦苇和香蒲叶片的高光谱数据,并在室内测定对应样点的水体总氮含量指标, 探讨基于典型湿地挺水植物高光谱数据对水体总氮进行遥感探测的可行性.采用4种高光谱参数(光谱指数、归一化差值指数、“三边”参数及吸收特征参数)分别建立一元线性模型、逐步多元回归模型和偏最小二乘模型,根据决定系数(R²)和均方根误差(RMSE)进行模型精度检验.结果表明: 逐步多元回归和偏最小二乘模型的预测精度高于一元线性模型. 3种模型对芦苇的拟合效果均优于香蒲.偏最小二乘模型对芦苇的拟合效果最优(R²=0.854,RMSE=0.647).500～700 nm是反映水氮含量的最佳波段范围,绿峰与红谷反射率的比值与水体总氮含量具有较强的相关性,尤其是吸收特征参数能够较好地预测水体总氮含量.     

Integrative insect taxonomy based on morphology,mitochondrial DNA,and hyperspectral reflectance profiling

Integrative taxonomy is considered a reliable taxonomic approach of closely related and cryptic species by integrating different sources of taxonomic data (genetic, ecological, and morphological characters). In order to infer the boundaries of seven species of the evacanthine leafhopper genus Bundera Distant, 1908 (Hemiptera: Cicadellidae), an integrated analysis based on morphology, mitochondrial DNA, and hyperspectral reflectance profiling (37 spectral bands from 411–870 nm) was conducted. Despite their morphological similarities, the genetic distances of the cytochrome c oxidase subunit I (COI) gene among the tested species are relatively large (5.8–17.3%). The species‐specific divergence of five morphologically similar species (Bundera pellucida and Bundera spp. 1–4) was revealed in mitochondrial DNA data and reflectance profiling. A key to identifying males is provided, and their morphological characters are described. Average reflectance profiles from the dorsal side of specimens were classified based on linear discriminant analysis. Cross‐validation of reflectance‐based classification revealed that the seven species could be distinguished with 91.3% classification accuracy. This study verified the feasibility of using hyperspectral imaging data in insect classification, and our work provides a good example of using integrative taxonomy in studies of closely related and cryptic species. © 2015 The Linnean Society of London     

The role of ultraviolet-A reflectance and ultraviolet-A induced fluorescence in the appearance of budgerigar plumage: insights from spectrofluorometry and reflectance spectrophotometry

Fluorescence has so far been found in 52 parrot species when illuminated with ultraviolet-A (UVA) 'black' lamps, and two attempts have been made to determine whether such fluorescence plays any role in sexual signalling. However, the contribution of the reflectance versus fluorescence to the total radiance from feathers, even in the most studied species to date (budgerigars), is unclear. Nor has the plumage of this study species been systematically assessed to determine the distribution of fluorescent patches. We therefore used spectrofluorometry to determine which areas of budgerigars fluoresce and the excitation and emission spectra involved; this is the first time that such a technique has been applied to avian plumage. We found that both the yellow crown and (normally hidden) white downy chest feathers exhibit strong UVA-induced fluorescence, with peak emissions at 527 nm and 436 nm, respectively. Conversely, the bright-green chest and dark-blue tail feathers do not fluoresce. When comparing reflectance spectra (400-700 nm) from the yellow crown using illuminants with a proportion of UVA comparable to daylight, and illuminants with all UVA removed, no measurable difference resulting from fluorescence was found. This suggests that under normal daylight the contribution of fluorescence to radiance is probably trivial. Furthermore, these spectra revealed that males had fluorescent crowns with substantially higher reflectance than those of females, in both the UV waveband and at longer wavelengths. Reflectance spectrophotometry was also performed on a number of live wild-type male budgerigars to investigate the chromatic contrast between the different plumage areas. This showed that many plumage regions are highly UV-reflective. Overall our results suggest that rapid surveys using UVA black lamps may overestimate the contribution of fluorescence to plumage coloration, and that any signalling role of fluorescence emissions, at least from the yellow crown of budgerigars, may not be as important as previously thought.     

Coral reefs in an urban embayment in Hawaii: a complex case history controlled by natural and anthropogenic stress

The effects of natural and anthropogenic stress need to be separated before coral reef ecosystems can be effectively managed. In this paper, a 25 year case history of coral reefs in an urban embayment (Mamala Bay) off Honolulu, Hawaii is described and differences between natural and man-induced stress are distinguished. Mamala Bay is a 30 km long shallow coastal bay bordering the southern (leeward) shore of Oahu and the city of Honolulu in the Hawaiian Islands. During the last 25 years, this area has been hit by two magnitude 5 hurricane events (winds >240 km/h) generating waves in excess of 7.5 m. Also during this period, two large sewer outfalls have discharged up to 90 million gallons per day (mgd) or (360x10⁶ L/day) of point source pollution into the bay. Initially the discharge was raw sewage, but since 1977 it has received advanced brimary treatment. Non-point source run-off from the Honolulu watershed also enters the bay on a daily basis. The results of the study show that discharge of raw sewage had a serious but highly localized impact on shallow (10m) reef corals in the bay prior to 1977. After 1977, when treatment was upgraded to the advanced primary level and outfalls were extended to deep water (>65 m), impacts to reef corals were no longer significant. No measurable effects of either point or non-point source pollution on coral calcification, growth, species composition, diversity or community structure related to pollution can now be detected. Conversely the effects of hurricane waves in 1982 and 1992 together caused major physical destruction to the reefs. In 1982, average coral cover of well-developed offshore reefs dropped from 60–75% to 5–15%. Only massive species in high relief areas survived. Today, recovery is occurring, and notwithstanding major future disturbance events, long-term biological processes should eventually return the coral ecosystems to a more mature successional stage. This case history illustrates the complex nature of the cumulative effects of natural and anthropogenic stress on coral reefs and the need for a long-term data base before the status of a coral reef can be properly interpreted.     

Distinguishing sources of base cations in irrigated and natural soils: evidence from strontium isotopes

Strontium isotope ratios (⁸⁷Sr/⁸⁶Sr) of soil solids, soil cation extracts, irrigation water and plant material are used to determine strontium and therefore cation sources and fluxes in irrigated and natural soil–plant systems. Strontium isotopes of soil solids from four soil profiles (two irrigated vineyard soils and two 'natural' profiles from nearby reserves) show large differences between soil horizons with depth. These differences are not reflected in ⁸⁷Sr/⁸⁶Sr ratios of soil labile cations, which show both little variation down-profile and much lower ratios than soil solids. In the undisturbed, natural soil profiles, labile cation ⁸⁷Sr/⁸⁶Sr ratios are close to the ratio of modern seawater, indicating that solutes of marine origin from precipitation are the primary input of strontium (and calcium) to the labile cation pool. In the irrigated soil profiles, ⁸⁷Sr/⁸⁶Sr ratios of labile cations are consistently shifted towards that of the irrigation water. Mass-balance calculations using ⁸⁷Sr/⁸⁶Sr ratios of the different inputs to the labile cation pool indicate more than 90% of labile strontium is derived from precipitation solutes in unirrigated soils, and up to 44% from irrigation water solutes as an additional source in irrigated soils. The ⁸⁷Sr/⁸⁶Sr ratios of grapes grown in irrigated soils match precisely with those of the labile soil cations, demonstrating that cation nutrients are drawn wholly from the labile cation pool and have the same mix of precipitation, irrigation, and soil solid sources. The ⁸⁷Sr/⁸⁶Sr ratios of grapes grown in the irrigated soils may therefore vary over time depending on (1) the changing mix of irrigation water and local precipitation and (2) potential change to irrigation water. These findings suggest limitations to the use of strontium isotopes in the tracing of grapes and wines to their soil of origin.