拟南芥草酸不敏感突变体的筛选与分析

草酸是多种真菌的致病因子。在含1.2 mmol/L 草酸和10 mmol/L 雌二醇的MS缺钙培养基上, 从大约含6000个独立株系的拟南芥化学诱导突变体库中筛选草酸不敏感的突变体。初筛获得的可能的草酸不敏感突变体单株收种后, 进一步复筛获得5株较抗草酸的突变体D33、D74、D154、D282和D630。对它们的TAIL-PCR的第三步产物回收、测序、比对的结果表明：D33的T-DNA插入位点位于At2g39720 (Zinc finger ) and At2g39730 (Rubisco activase) 之间, D74、D154、D282和D630都插在At5g10450 (14-3-3 protein GF14 lambda) 的第一个内含子上。突变体后继的遗传分析与分子分析正在进行中。     

拟南芥H_2O_2突变体的筛选及特性分析

通过化学诱变剂甲基磺酸乙酯(EMS)诱变模式植物拟南芥(Arabidopsis thaliana)获得突变体筛选群体.在5 mmol/L H2O2胁迫下,以叶片温度差异为筛选指标,利用远红外成像技术进行突变体的筛选,获得了对H2O2不敏感突变体hpi1(hydrogen peroxide-insensitive1)和敏感突变体hps1(hydrogen peroxide-sensitive1).进一步研究发现,两种突变均为单基因隐性突变,气孔密度同野生型一样,而叶片温度、气孔开度和叶片失水率则有明显的差异.种子萌发实验表明,hpi1对甘露醇(Man)和NaCl不敏感而对ABA敏感,hps1则对3种胁迫都表现出敏感特性.     

异三聚体G蛋白在NAA诱导的拟南芥根生长发育中的作用

以拟南芥的野生型(ws)、异三聚体G蛋白α亚基基因GPA1缺失突变体(gpa1-1,gpa1-2)和超表达突变体(wGα,cGα)为材料,通过施加不同浓度(0~0.2 mg/L)的NAA处理,对拟南芥根生长发育的一些形态指标进行了观测比较.结果表明:(1)随着培养基中NAA浓度的不断升高,5种基因型主根的伸长生长均受到抑制,且抑制作用随浓度升高而增强;4种突变体和野生型主根的生长在相同浓度NAA处理下,无明显差异;(2)NAA在一定浓度范围内,对拟南芥侧根的生长发育起促进作用;在NAA诱导的侧根生长中,G蛋白超表达突变体比野生型更敏感,缺失突变体则不敏感.初步证明G蛋白不参与主根生长发育的调节,而在侧根生长发育中可能起正调节作用.     

拟南芥铵超敏感突变体amosd和vtc1对外源铵的响应

分析了不同外源铵浓度(0、1、5、10、20mmol.L-1)处理下,2个铵超敏感突变体amosd和vtc1对于外源铵处理的响应差异。结果表明,尽管amosd和vtc1都表现为对外源铵超敏感,但二者对外源铵处理浓度的敏感性上存在差异。随着外源铵浓度的增加,vtc1比amosd先表现出铵中毒症状,更高浓度(20mmol·L-1)铵处理时amosd受到的毒害程度表现更加严重,AMOSD遗传位点的缺失容易导致植物出现铵毒害死亡。其次,二者在遭受外源铵胁迫时表现的最敏感部位有所不同,主要的毒害特征上存在差异,amosd在铵胁迫下首先表现在叶片尤其是新叶的发育受阻,而vtc1则主要表现在根部尤其是主根的伸长受阻。通过分区供应实验证明,amosd主要对于地上部供铵处理超敏感,对根部供铵处理不表现超敏感特性;而vtc1则相反,对根部供铵处理超敏感,对地上部供铵不表现超敏感特性。由此可见,amosd和vtc1这2个铵超敏感突变体在拟南芥铵毒害范围和部位上存在较大差异,与vtc1有所不同,amosd是一个叶源铵超敏感型突变体。在农业机械化叶面喷施施肥日益增加和环境铵沉降日益严重的当下,叶源型铵超敏感突变体amosd的获得为揭示植物地上部铵毒害机制提供了一个理想的遗传材料,对系统全面认识植物铵毒害机制,提高作物耐铵性状具有十分重要的意义。     

拟南芥活性氧不敏感型突变体的筛选与特性分析

采用 EMS化学诱变方法与 H2 O2 氧化胁迫选择 ,以根在重力作用下的弯曲生长为指标 ,筛选得到拟南芥活性氧不敏感型突变体。对突变体杂交后代遗传分析表明 ,突变株对活性氧不敏感性状为隐性单基因突变所致 ;生理生化分析表明突变体对 H2 O2 有很强的抗性 ,表现为气孔开度对 H2 O2 不敏感和 H2 O2 胁迫时较低的膜脂过氧化水平。运用 L SCM技术并结合 H2 O2 荧光探针 H2 DCFDA检测外源 ABA诱导保卫细胞内产生 H2 O2 的情况 ,结果显示突变体体内荧光强度比对照低 ,暗示了突变体体内消除 H2 O2 的能力可能有所提高 ,增强了植株对氧化胁迫的抗性。拟南芥活性氧不敏感突变体的筛选 ,不仅为人们深入研究活性氧在细胞内的作用提供良好的实验材料 ,而且还将大大加深人们对信号转导途径的再认识     

生长素信号转导途径与植物胁迫反应相互作用的证据

生长素影响植物多种生理过程,有报道显示生长素可能影响植物对逆境胁迫的反应.我们利用cDNA阵列技术鉴定拟南芥(Arabidopsis thaliana (L.) Heynh.)的生长素应答基因,发现多个胁迫应答基因受生长素抑制,包括Arabidopsis homolog of MEK kinase1 (ATMEKK1),RelA/SpoT homolog 3 (At-RSH3),Catalase 1 (Cat1) 和Ferritin 1 (Fer1),说明生长素可调节胁迫应答基因的表达.此外,我们还证明吲哚乙酸(IAA)合成途径中的腈水解酶基因nitrilase 1 (NIT1) 和nitrilase 2 (NIT2) 受盐胁迫诱导,提示在逆境条件下IAA的合成可能随之增加.我们利用生长素不敏感突变体研究生长素与逆境反应相互作用的信号转导,发现胁迫应答基因在野生型和生长素不敏感突变体auxin resistant 2 (axr2) 中可被盐胁迫诱导,而在auxin resistant 1-3 (axr1-3)中则不被诱导,说明生长素与逆境胁迫反应的相互作用可能发生在泛素途径.     

拟南芥BAND7基因序列分析及相关突变体的生理功能研究

BAND7是具有SPFH特征结构域的一类膜蛋白,同其他膜蛋白偶联,调节离子转运和信号转导,广泛分布于不同的动物细胞中.通过序列比对,在模式植物拟南芥中鉴定到4个可能编码BAND7蛋白的基因,其基因代码分别是Atlg69840、At3g01290、At5g62740和At5g51570.半定量反转录PCR检测发现,它们在拟南芥的叶和根中都有表达,叶中的表达均高于根.通过PCR检测,获得基因Atlg69840和At5g51570的T-DNA插入敲除型纯合突变株SALK_088328和SALK_104547.通过对比野生型植株和基因敲除突变体在不同培养基上的根长和鲜重方面的差异,证明植物BAND7基因At5g51570参与了植物钙离子的吸收过程.     

慢性乙型肝炎病毒耐药突变体研究

在治疗慢性乙型肝炎的核苷类似物的用药过程中,筛选耐药突变体.选定1名从未接受抗病毒治疗慢性乙型肝炎患者,用抗病毒核酸类药物治疗,不同治疗时期提取血清HBV DNA,用引物P1(5′-AAGGG-TATCTTGCCCGTTTGTCGTA-3′)和P2(5′-AAGCAGGATAGCCACAGA-3′)为第1轮,P3(5′-AAGGCACTTGTAT-TCCCATCCGAG-3′)和P4(5′-AAGGTCTATTTACAGGGGA-3′)为第2轮引物扩增筛选耐药突变体.在18周和22周分别检测到突变体LMV rtH69T(YMDDlocus)和LMV rtT184T(YMDDlocus)、LMV rtM204I(YMDDlocus).在60周和70周分别检测到ADV T213S、ADV T222A、ADV K212T和ADV S196L、ADV S242H,其中ADV S196L和ADV S242H 2种突变体是首次检测到.HBV核苷酸类似物耐药突变体筛选,对研究HBV耐药的分子机制有帮助.     

生长素信号转导途径与植物胁迫反应相互作用的证据(英)

生长素影响植物多种生理过程 ,有报道显示生长素可能影响植物对逆境胁迫的反应。我们利用cDNA阵列技术鉴定拟南芥 (Arabidopsisthaliana (L .)Heynh .)的生长素应答基因 ,发现多个胁迫应答基因受生长素抑制 ,包括ArabidopsishomologofMEKkinase1(ATMEKK1) ,RelA/SpoThomolog 3(At_RSH3) ,Catalase 1(Cat1)和Ferritin 1(Fer1) ,说明生长素可调节胁迫应答基因的表达。此外 ,我们还证明吲哚乙酸 (IAA)合成途径中的腈水解酶基因nitrilase 1(NIT1)和nitrilase 2 (NIT2 )受盐胁迫诱导 ,提示在逆境条件下IAA的合成可能随之增加。我们利用生长素不敏感突变体研究生长素与逆境反应相互作用的信号转导 ,发现胁迫应答基因在野生型和生长素不敏感突变体auxinresistant2 (axr2 )中可被盐胁迫诱导 ,而在auxinresistant1_3(axr1_3)中则不被诱导 ,说明生长素与逆境胁迫反应的相互作用可能发生在泛素途径。     

生长素信号转导途径与植物胁迫反应相互作用的证据

生长素影响植物多种生理过程,有报道显示生长素可能影响植物对逆境胁迫的反应。我们利用cDNA阵列技术鉴定拟南芥（Arabiopsis thaliana (L.)Heynh.）的生长素应答基因,发现多个胁迫应答基因受生长素抑制,包括Arabidopsis homolog of MEK kinasel（ATMEKK1）,RelA/SpoT homolog 3(At-RSH3),Catalase 1(Cat1)和Ferriitn 1(Fer1)。说明生长素可调节胁迫应答基因的表达,此外,我们还证明吲哚乙酸（LAA）合成途径中的腈水解酶基因nitrilase 1(NIT1)和nitrilae 2（NIT2）受盐胁迫诱导,提示在逆境条件下1AA的合成可能随之增加,我们利用生长素不敏感突变体研究生长素与逆境反应相互作用的信号转导,发现胁迫应答基因在野生型和生长素不敏感突变体auxin resistant 2（axr2）中可被盐胁迫诱导,而在auxin resitant1-3（axl-3)中则不被诱导,说明生长素与逆境胁迫反应的相互作用可能发生在泛素途径。     

Searching for tagged male-sterile mutants of arabidopsis

Although many male-sterile mutants have been identified inArbidopsis thaliana, few of the corresponding genes have been cloned. In order to facilitate cloning of a male sterility gene, 23 of Feldmann's T-DNA-generated, reduced-fertility lines were screened to identify a tagged male-sterile mutation. Malesterile mutants were identified, as well as mutants that were both male and female sterile. Segregation of the kanamycin marker gene in the progeny of 15 of these lines was studied. Forty percent had functional T-DNAs (encoding resistance to kanamycin) inserted at a single locus, the remainder segregating for two or more functional T-DNA inserts. Linkage between T-DNA inserts and mutant phenotype was tested for six lines. In three of these lines, mutations were not linked to a T-DNA insert. In three lines, the mutation segregated with a T-DNA insert.     

菰黑粉菌T-DNA突变体库的构建及分析

通过建立适用于菰黑粉菌Ustilago esculenta的农杆菌介导遗传转化(Agrobacterium tumefaciens-mediated transformation,ATMT)体系,构建菰黑粉菌T-DNA插入突变体库。针对性地筛选双核菌丝形成缺陷型转化子,并对T-DNA插入位点进行分析,为研究菰黑粉菌二态型转换的分子调控机理打下基础。以构建的菰黑粉菌自融合菌株TSP为出发菌株,以含有遗传霉素(G418)抗性基因(neo)的质粒为载体,通过ATMT构建菰黑粉菌T-DNA突变体库,并对诱导剂乙酰丁香酮(AS)浓度、转化的共培养时间、农杆菌浓度和菰黑粉菌芽孢子浓度等建库影响因素进行单因素条件试验,筛选最优条件;对继代培养的转化子基因组中的遗传霉素抗性基因进行PCR检测,验证转化子遗传稳定性;对突变体库中的转化子双核菌丝生长情况进行观察,测定其双核菌丝形成能力;对上述双核菌丝形成缺陷型转化子进行基因组重测序,分析其T-DNA插入位点。当遗传霉素浓度为75μg/mL时,菰黑粉菌的生长被完全抑制。当AS浓度为100μg/mL、共培养时间为24 h、孢子浓度为1×10⁵     

Activation tagging,a novel tool to dissect the functions of a gene family

In a screen for morphological mutants from the T1 generation of approximately 50 000 activation-tagging lines, we isolated four dominant mutants that showed hyponastic leaves, downward-pointing flowers and decreased apical dominance. We designated them isoginchaku (iso). The iso-1D and iso-2D are allelic mutants caused by activation of the AS2 gene. The T-DNAs were inserted in the 3' downstream region of AS2. Iso-3D and iso-4D are the other allelic mutants caused by activation of the ASL1/LBD36 gene. These two genes belong to the AS2 family that is composed of 42 genes in Arabidopsis. The only recessive mutation isolated from this gene family was of AS2, which resulted in a leaf morphology mutant. Applying reverse genetics using a database of activation-tagged T-DNA flanking sequences, we found a dominant mutant that we designated peacock1-D (pck1-D) in which the ASL5/LBD12 gene was activated by a T-DNA. The pck1-D mutants have lost apical dominance, have epinastic leaves and are sterile. These results strongly suggest that activation tagging is a powerful mutant-mining tool especially for genes that make up a gene family.     

Generation and flanking sequence analysis of a rice T-DNA tagged population

Insertional mutagenesis provides a rapid way to clone a mutated gene. Transfer DNA (T-DNA) of Agrobacterium tumefaciens has been proven to be a successful tool for gene discovery in Arabidopsis and rice (Oryza sativa L. ssp. japonica). Here, we report the generation of 5,200 independent T-DNA tagged rice lines. The T-DNA insertion pattern in the rice genome was investigated, and an initial database was constructed based on T-DNA flanking sequences amplified from randomly selected T-DNA tagged rice lines using Thermal Asymmetric Interlaced PCR (TAIL-PCR). Of 361 T-DNA flanking sequences, 92 showed long T-DNA integration (T-DNA together with non-T-DNA). Another 55 sequences showed complex integration of T-DNA into the rice genome. Besides direct integration, filler sequences and microhomology (one to several nucleotides of homology) were observed between the T-DNA right border and other portions of the vector pCAMBIA1301 in transgenic rice. Preferential insertion of T-DNA into protein-coding regions of the rice genome was detected. Insertion sites mapped onto rice chromosomes were scattered in the genome. Some phenotypic mutants were observed in the T₁ generation of the T-DNA tagged plants. Our mutant population will be useful for studying T-DNA integration patterns and for analyzing gene function in rice.Electronic Supplementary Material Supplementary material is available in the online version of this article at .Communicated by D. Mackill     

农杆菌介导转化黑曲霉分生孢子及产孢缺陷突变子T-DNA插入位点分析

【目的】利用农杆菌(Agrobacterium tumefaciens)T-DNA系统,建立转化黑曲霉(Aspergillus niger)分生孢子的方法,构建T-DNA插入突变子文库,为黑曲霉基因组功能注释研究打下基础。【方法】采用携带二元质粒载体pCAMBIA1301的农杆菌EHA105,诱导转化黑曲霉分生孢子,筛选具有潮霉素抗性的突变子。分析抗性稳定突变子菌株的表型,采用反向PCR方法分析T-DNA插入位点相邻位置的序列,并推测突变基因可能具有的功能。【结果】实验获得具有稳定潮霉素抗性转化子193株,转化率为5.6×102转化子/108分生孢子。部分转化子表型出现较为明显改变,其中一株不能产孢,对其T-DNA插入位点序列分析比对结果显示,突变基因属于超级转运家族(major facilitator superfamily,MFS)。【结论】本研究建立的农杆菌转化黑曲霉分生孢子平台,结合T-DNA插入突变位点分析,可以为黑曲霉基因组功能注释研究提供一种简便有效的途径。     

An insertional mutagenesis system for analyzing the Chinese cabbage genome using Agrobacterium T-DNA

In this study, we applied insertional mutagenesis using Agrobacterium transfer DNA to functionally characterize the gene of Brassica rapa L. ssp. pekinensis. The specific objectives were to: (i) develop and apply a gene tagging system using plasmid rescue and inverse PCR, (ii) select and analyze mutant lines, and (iii) analyze the phenotypic characteristics of mutants. A total of 3,400 insertional mutant lines were obtained from the Chinese cabbage cultivar, ’seoul’, using optimized condition. Plasmid rescue was performed successfully for transgenic plants with multiple T-DNA insertions, and inverse PCR was performed for plants with a single copy. The isolated flanking DNA sequences were blasted against the NCBI database and mapped to a linkage map. We determined the genetic loci in B. rapa with two methods: RFLP using the rescue clones themselves and sequence homology analysis to the B. rapa sequence database by queries of rescued clones sequences. Compared to wild type, the T₁ progenies of mutant lines showed variable phenotypes, including hairless and wrinkled leaves, rosette-type leaves, and chlorosis symptoms. T-DNA inserted mutant lines were the first population that we developed and will be very useful for functional genomics studies of Chinese cabbage.     

Insertional mutagenesis of genes required for seed development in Arabidopsis thaliana.

The purpose of this project was to identify large numbers of Arabidopsis genes with essential functions during seed development. More than 120,000 T-DNA insertion lines were generated following Agrobacterium-mediated transformation. Transgenic plants were screened for defective seeds and putative mutants were subjected to detailed analysis in subsequent generations. Plasmid rescue and TAIL-PCR were used to recover plant sequences flanking insertion sites in tagged mutants. More than 4200 mutants with a wide range of seed phenotypes were identified. Over 1700 of these mutants were analyzed in detail. The 350 tagged embryo-defective (emb) mutants identified to date represent a significant advance toward saturation mutagenesis of EMB genes in Arabidopsis. Plant sequences adjacent to T-DNA borders in mutants with confirmed insertion sites were used to map genome locations and establish tentative identities for 167 EMB genes with diverse biological functions. The frequency of duplicate mutant alleles recovered is consistent with a relatively small number of essential (EMB) genes with nonredundant functions during seed development. Other functions critical to seed development in Arabidopsis may be protected from deleterious mutations by extensive genome duplications.