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1.
Aerobic anoxygenic phototrophic bacteria (AAP) represent an important fraction of bacterioplankton assemblages in various oceanic regimes. Although their abundance and distribution have been explored recently in diverse oceanic regions, the environmental factors controlling the population structure and diversity of these photoheterotrophic bacteria remain poorly understood. Here, we investigate the horizontal and vertical distributions and the genetic diversity of AAP populations collected in late summer throughout the Mediterranean Sea using pufM-temporal temperature gel gradient electrophoresis (TTGE) and clone library analyses. The TTGE profiles and clone libraries analyzed using multivariate statistical methods demonstrated a horizontal and vertical zonation of AAP assemblages. Physicochemical parameters such as pH, inorganic nitrogen compounds, photosynthetically active radiation, total organic carbon and to a lesser extent particulate organic nitrogen and phosphorus, and biogenic activities (e.g. bacterial production, cell densities), acted in synergy to explain the population changes with depth. About half of the pufM sequences were <94% identical to known sequences. The AAP populations were predominantly (~80%) composed of Gammaproteobacteria, unlike most previously explored marine systems. Our results suggest that genetically distinct ecotypes inhabiting different niches may exist in natural AAP populations of the Mediterranean Sea whose genetic diversity is typical of oligotrophic environments.  相似文献   

2.
Systematically quantifying diversity across landscapes is necessary to understand how clade history and ecological heterogeneity contribute to the origin, distribution, and maintenance of biodiversity. Here, we chart the spatial structure of diversity among all species in the sedge family (Cyperaceae) throughout the USA and Canada. We first identify areas of remarkable species richness, phylogenetic diversity, and functional trait diversity, and highlight regions of conservation priority. We then test predictions about the spatial structure of this diversity based on the historical biogeography of the family. Incorporating a phylogeny, over 400 000 herbarium records, and a database of functional traits mined from online floras, we find that species richness and functional trait diversity peak in the Northeastern USA, while phylogenetic diversity peaks along the Gulf of Mexico. Floristic turnover among assemblages increases significantly with distance, but phylogenetic turnover is twice as rapid along latitudinal gradients as along longitudinal gradients. These patterns reflect the expected distribution of Cyperaceae, which originated in the tropics but radiated in temperate regions. We identify assemblages with an abundance of rare, range‐restricted lineages, and assemblages composed of species generally lacking from diverse regions. We argue that both of these metrics are useful for developing targeted conservation strategies. We use the data generated here to establish future research priorities, including the testing of a series of hypotheses regarding the distribution of chromosome numbers, photosynthetic pathways, and resource partitioning in sedges.  相似文献   

3.
The distribution of calcareous dinoflagellate cysts in surface sediments from the Mediterranean Sea was quantitatively analysed. The samples contain 11 cyst species and the vegetative coccoid Thoracosphaera heimii. Cyst abundance increases towards the deeper parts of the basins and is generally higher in the eastern Mediterranean Sea. Three major distribution characteristics exist: (1) different assemblages in oceanic and neritic regions, (2) little agreement with the associations of areas studied so far like the Atlantic Ocean, and (3) a unique oceanic assemblage in the eastern Mediterranean Sea. A gradual change in cyst assemblages from the western to the eastern Mediterranean Sea was observed and statistically compared with the main environmental gradients in the upper water column. Temperature, nitrate concentration and possibly salinity appear to be the most important factors controlling cyst production. Three groups containing cysts with similar environmental preferences can be distinguished: (1) an eastern Mediterranean group related to relatively high temperature and salinity but low nitrate concentration, (2) a group of more or less consistently abundant cosmopolitan species tolerating or even preferring relatively low temperature and salinity but high nitrate concentration, and (3) a group containing species that are possibly adapted to neritic environments and have probably been transported from coastal areas into the studied regions. In contrast to other calcareous plankton, calcareous dinoflagellate cysts correlate strongly with the main environmental gradients in the Mediterranean Sea, bearing a high potential for palaeoenvironmental reconstructions.  相似文献   

4.
The Mediterranean Sea (0.82% of the global oceanic surface) holds 4%-18% of all known marine species (~17,000), with a high proportion of endemism [1, 2]. This exceptional biodiversity is under severe threats [1] but benefits from a system of 100 marine protected areas (MPAs). Surprisingly, the spatial congruence of fish biodiversity hot spots with this MPA system and the areas of high fishing pressure has not been assessed. Moreover, evolutionary and functional breadth of species assemblages [3] has been largely overlooked in marine systems. Here we adopted a multifaceted approach to biodiversity by considering the species richness of total, endemic, and threatened coastal fish assemblages as well as their functional and phylogenetic diversity. We show that these fish biodiversity components are spatially mismatched. The MPA system covers a small surface of the Mediterranean (0.4%) and is spatially congruent with the hot spots of all taxonomic components of fish diversity. However, it misses hot spots of functional and phylogenetic diversity. In addition, hot spots of endemic species richness and phylogenetic diversity are spatially congruent with hot spots of fishery impact. Our results highlight that future conservation strategies and assessment efficiency of current reserve systems will need to be revisited after deconstructing the different components of biodiversity.  相似文献   

5.
Biological diversity can be measured using ecological, taxonomic and functional indices, although numerous studies have concluded that organism morphology can be also a source for computing diversity indices. In the present study, we characterized fish morphology using geometric morphology, which included body shape landmarks as well as the morphology of fins, and we computed the correlation among ecological, taxonomic, functional and morphological indices (including a new index defined here called “morphological richness”). Morphological indices were calculated both from abundance data and presence/absence data. To carry out this study, thirteen fish assemblages of two different areas of the Catalan coast (north-western Mediterranean) were analyzed. The data was sampled by commercial fishing vessels using trammel nets. The results clearly indicated that each type of morphological index is related to one dimension of the biodiversity space. Furthermore, we demonstrated that presence/absence data provided the similar results as abundance data when using morphological indices, opening the possibility to analyze the evolution of fish assemblages over time from species checklists collected in experimental surveys from the late XIX century to the present.  相似文献   

6.
The abundance of a given species in a community is likely to depend on both the total abundance and diversity of other species making up that community. A large number of co-occurring individuals or co-occurring species may decrease the abundance of any given species via diffuse competition; however, indirect interactions among many co-occurring species can have positive effects on a focal species. The existence of diffuse competition and facilitation remain difficult to demonstrate in natural communities. Here, we use data on communities of fleas ectoparasitic on small mammals from 27 distinct geographical regions to test whether the abundance of any given flea species in a community is affected by either the total abundance of all other co-occurring flea species, or the species richness and/or taxonomic diversity of the flea community. At all scales of analysis, i.e. whether we compared the same flea species on different host species, or different flea species, two consistent results emerged. First, the abundance of a given flea species correlates positively with the total abundance of all other co-occurring flea species in the community. Second, the abundance of any given flea species correlates negatively with either the species richness or taxonomic diversity of the flea community. The results do not support the existence of diffuse competition in these assemblages, because the more individuals of other flea species are present on a host population, the more individuals of the focal species are there as well. Instead, we propose explanations involving either apparent facilitation among flea species via suppression of host immune defenses, or niche filtering processes acting to restrict the taxonomic composition and abundance of flea assemblages.  相似文献   

7.
城市化是生物多样性快速丧失的主要原因之一。鸟类作为城市生态系统的重要组成部分, 其生物多样性格局和物种保护已成为城市生态学研究的热点。为揭示城市化过程中城区和郊区破碎化林地中鸟类群落的多样性差异和嵌套格局, 本研究于2021年春、夏季鸟类繁殖期采用样线法对海口和三亚市的城区、郊区共13个林地斑块中的鸟类群落进行调查。使用NODF (nestedness metric based on overlap and decreasing fill)和WNODF (weighted nestedness metric based on overlap and decreasing fill)方法进行嵌套格局分析。研究发现: (1)共记录到林鸟100种, 隶属于11目39科, 其中三亚郊区的鸟类丰富度最高, 共8目29科68种。记录到国家重点保护鸟类共18种, 其中两城市郊区的国家重点保护鸟类物种数均多于城区, 海口郊区还记录到国家I级重点保护鸟类黄胸鹀(Emberiza aureola)。(2)鸟类群落多度、物种丰富度、Pielou均匀度指数和Shannon-Wiener多样性指数在不同区域中均存在差异。海口城区的鸟类群落多度显著高于海口郊区(P < 0.05), 三亚郊区的鸟类群落物种丰富度、Pielou均匀度指数和Shannon-Wiener多样性指数均显著高于三亚城区和海口郊区(P < 0.05)。(3)嵌套分析结果表明, 海口和三亚市的城区、郊区林地鸟类群落均呈现反嵌套分布格局。线性回归分析显示, 三亚市城区和郊区的斑块面积与鸟类物种丰富度呈显著正相关, 而物种丰富度与斑块距最近大面积林地的距离之间无显著相关性。研究表明, 两城市鸟类群落多样性都表现出郊区高于城区的特点, 少数优势种(如白头鹎 Pycnonotus sinensis)占据了城市中的主要生态位。受城市化的影响, 海口郊区与城区鸟类群落有同质化的趋势。鸟类在城区和郊区斑块间的高流动性、种间竞争和斑块中资源的可利用性等因素可能导致斑块间鸟类群落的反嵌套分布格局。我们建议应加强城区和郊区鸟类的保护, 减少对林地的破坏, 提高城市鸟类多样性。  相似文献   

8.
Hu Y  Du H  Jiao N  Zeng Y 《FEMS microbiology letters》2006,263(2):200-206
Known anoxygenic photosynthetic bacteria (APB) affiliated to Gammaproteobacteria usually use anaerobic metabolism and are restricted to oxygen-free habitats. Here, we report abundant (average of 34.5%) presence of diverse APB related to gamma-like Proteobacteria in oxic oceanic surface water as indicated by the pufM gene, that encodes the M subunit of the light reaction centre complex. Thus, our sequences were most likely derived from aerobic anoxygenic phototrophs (AAnP). Two genetically distinct genotypes were revealed: one was from the oligotrophic North Pacific Ocean Gyre and the other, was from the trophic East China Sea and Bering Sea. The discovery of abundant presence of novel gamma-like Proteobacterial pufM gene in the oxic seawater extends the functional ecotypes of AAnP.  相似文献   

9.
Spiders are a megadiverse group that can be useful indicators of the overall species richness and health of biotic communities. The spider diversity in subtropical forests of the Neotropical region are not yet well known, especially in Argentinean subtropical forests where systematic fieldwork has not been done until recently. The Great Chaco is very important as the unique dry subtropical forest of the earth, but it is suffering increasing degradation by the advance of agriculture. Spider communities have been shown to be more directly influenced by vegetation architecture than vegetation species composition. In this study, we aim to assess whether spider diversity and assemblages change in adjacent habitats with different types of vegetation. We compare the diversity and spider assemblages in two different contiguous protected habitats (hygrophilous woodland and savannah parkland) of the Mburucuyá National Park, (Humid Chaco ecoregion). Seasonal samples were obtained using three types of sampling methods: pitfall trapping, beating, and manual litter extraction. The spider assemblages were different in the studied areas, and the abundance, diversity, evenness, and species richness were higher in the hygrophilous woodland than the savannah parkland. These differences in spider diversity and assemblages indicate that both types of habitats are important if the biodiversity is to be conserved in the Chaco ecoregion, where different types of habitat are shown as a patchy distribution.  相似文献   

10.
In this work, we study the diversity of bathypelagic microbial eukaryotes (0.8–20 μm) in the global ocean. Seawater samples from 3000 to 4000 m depth from 27 stations in the Atlantic, Pacific and Indian Oceans were analyzed by pyrosequencing the V4 region of the 18S ribosomal DNA. The relative abundance of the most abundant operational taxonomic units agreed with the results of a parallel metagenomic analysis, suggesting limited PCR biases in the tag approach. Although rarefaction curves for single stations were seldom saturated, the global analysis of all sequences together suggested an adequate recovery of bathypelagic diversity. Community composition presented a large variability among samples, which was poorly explained by linear geographic distance. In fact, the similarity between communities was better explained by water mass composition (26% of the variability) and the ratio in cell abundance between prokaryotes and microbial eukaryotes (21%). Deep diversity appeared dominated by four taxonomic groups (Collodaria, Chrysophytes, Basidiomycota and MALV-II) appearing in different proportions in each sample. Novel diversity amounted to 1% of the pyrotags and was lower than expected. Our study represents an essential step in the investigation of bathypelagic microbial eukaryotes, indicating dominating taxonomic groups and suggesting idiosyncratic assemblages in distinct oceanic regions.  相似文献   

11.
As biodiversity loss rapidly increases through habitat degradation in the Amazon rainforest, the need to characterize and understand the species diversity becomes even more important. In this study we used empirical and published datasets to assess the diversity patterns and produce the first overview of the sphingid fauna in the Brazilian Amazon. We compared the diversity patterns in distinct areas in the biome by analyzing hawkmoth assemblages considering both species composition and abundance, and asked whether these communities are structured according to environmental factors. Additionally, we provide information of diel activity pattern of sphingids and evaluated the importance of time in sampling effort. We found that the Brazilian Amazon may harbor more than 80 % of the hawkmoth species that occur in Brazil and more than half of the species recorded in South America. Species composition and assemblage structure is determined by the quality of the habitat (disturbed or undisturbed vegetation), temperature and relative humidity. Finally, we show that the temporal activity of sphingids presents distinct patterns at different taxonomic levels, highlighting the importance of full night collections to better characterize the fauna. Our results show that habitat alteration can be an important factor affecting sphingid assemblages, illustrating the importance of Protected Areas in species maintenance.  相似文献   

12.
Benthic ecological surveys using standardized methods are crucial for assessing changes associated with several threats in the Southern Ocean. The acquisition of data on assemblage structure over a variety of spatial scales is important to understand the variation of biodiversity patterns. During the ANT XXIX/3 (PS81) expedition of RV Polarstern, three different regions at the tip of the Antarctic Peninsula were sampled: the northwestern Weddell Sea, the Bransfield Strait, and the northern boundary of the South Shetland Archipelago in the Drake Passage. The aim of this study was to characterize the distribution and biodiversity patterns of ophiuroid assemblages in these regions and depths. We quantified different community parameters in terms of the number of species, abundance, and biomass. Additionally, we calculated various components of species diversity (alpha, beta, and gamma diversity) over the three regions. Based on the benthic surveys, we collected 3331 individuals that were identified to species level (17 species). Overall, species diversity, as measured based on rarefaction, species richness and evenness estimators, was higher in the Bransfield Strait compared to the Weddell Sea and Drake Passage. Two deep stations in the Weddell Sea showed high dominance only of Ophionotus victoriae. Significant differences in the patterns of alpha diversity were found among the regions but not between depth zones, whereas beta diversity showed no differences. Regarding the resemblance among the ophiuroid assemblages of each region, there was a significant gradient from east to west with a maximum distance between the stations in the Drake Passage and the Weddell Sea. This study provides a baseline for detecting potential effects related to climate change, and it furnishes a basis for the implementation of monitoring schemes of Antarctic assemblages.  相似文献   

13.
Landscape-scale patterns of freshwater fish diversity and assemblage structure remain poorly documented in many areas of Central America, while aquatic ecosystems throughout the region have been impacted by habitat degradation and hydrologic alterations. Diadromous fishes may be especially vulnerable to these changes, but there is currently very little information available regarding their distribution and abundance in Central American river systems. We sampled small streams at 20 sites in the Sixaola River basin in southeastern Costa Rica to examine altitudinal variation in the diversity and species composition of stream fish assemblages, with a particular focus on diadromous species. A set of environmental variables was also measured in the study sites to evaluate how changes in fish assemblage structure were related to gradients in stream habitat. Overall, fish diversity and abundance declined steeply with increasing elevation, with very limited species turnover. The contribution of diadromous fishes to local species richness and abundance increased significantly with elevation, and diadromous species dominated assemblages at the highest elevation sites. Ordination of the sampling sites based on fish species composition generally arranged sites by elevation, but also showed some clustering based on geographic proximity. The dominant gradient in fish community structure was strongly correlated with an altitudinal habitat gradient identified through ordination of the environmental variables. The variation we observed in stream fish assemblages over relatively small spatial scales has significant conservation implications and highlights the ecological importance of longitudinal connectivity in Central American river systems.  相似文献   

14.
The influence of seasonal fluctuations and environmental factors on the occurrence and distribution of zoosporic true fungi and heterotrophic straminipiles in terrestrial ecosystems is poorly understood. This contribution analyses the species composition, frequency, abundance and diversity of zoosporic true fungi and heterotrophic straminipiles assemblages from two areas of Cerrado in the State of São Paulo, Brazil. Samples of soil were collected at four dates during the rainy and dry seasons. Twenty-one abiotic factors were measured. The assemblages showed a high diversity and evenness and were represented by 30 taxa of Chytridiomycota and Oomycota. Some abiotic factors appeared to have influenced the patterns of distribution and occurrence of the taxa in different areas and/or seasons. Even so, the biotic factors (richness, diversity indices and evenness) and the Sorensen index showed high similarity between the assemblages.  相似文献   

15.
Middle-Upper Oxfordian assemblages of foraminifera in the Prebetic Zone (Betic Cordillera, SE Spain) were analysed at the genus level to determine their composition, relative abundance, diversity, and dominance, as well as the size of the specimens. A relationship has been established between lithofacies, palaeogeography and composition of foraminiferal assemblages, the former two also determining the stratigraphic record of these microfossil assemblages. Two assemblages of foraminifera serve to identify relatively distal and proximal areas in the Prebetic shelf. The distal assemblage is characterized by higher diversity, specimens of greater size, and more abundant planktic and agglutinated forms. Benthic forms include Ophthalmidium, Epistomina and colonies of encrusting foraminifera. The proximal assemblage shows lower diversity, lower abundance of planktic forms, Epistomina and encrusting nubeculariids, and a greater abundance of spirillinids and Reofax. On the whole, planktic foraminifera decrease upwards in the studied succession, which, together with decreasing nodularity, could be related to system tract conditions previously proposed for Oxfordian deposits in the southern palaeomargin of Iberia.  相似文献   

16.
The abundance and diversity of parasites vary among different populations of host species. In some host-parasite associations, much of the variation seems to depend on the identity of the host species, whereas in other cases it is better explained by local environmental conditions. The few parasite taxa investigated to date make it difficult to discern any general pattern governing large-scale variation in abundance or diversity. Here, we test whether the abundance and diversity of gamasid mites parasitic on small mammals across different regions of the Palaearctic are determined mainly by host identity or by parameters of the abiotic environment. Using data from 42 host species from 26 distinct regions, we found that mite abundances on different populations of the same host species were more similar to each other than expected by chance, and varied significantly among host species, with half of the variance among samples explained by differences between host species. A similar but less pronounced pattern was observed for mite diversity, measured both as species richness and as the taxonomic distinctness of mite species within an assemblage. Strong environmental effects were also observed, with local temperature and precipitation correlating with mite abundance and species richness, respectively, across populations of the same host species, for many of the host species examined. These results are compared to those obtained for other groups of parasites, notably fleas, and discussed in light of attempts to find general rules governing the geographical variation in the abundance and diversity of parasite assemblages.  相似文献   

17.
The marine viromes of four oceanic regions   总被引:8,自引:3,他引:5       下载免费PDF全文
Viruses are the most common biological entities in the marine environment. There has not been a global survey of these viruses, and consequently, it is not known what types of viruses are in Earth's oceans or how they are distributed. Metagenomic analyses of 184 viral assemblages collected over a decade and representing 68 sites in four major oceanic regions showed that most of the viral sequences were not similar to those in the current databases. There was a distinct “marine-ness” quality to the viral assemblages. Global diversity was very high, presumably several hundred thousand of species, and regional richness varied on a North-South latitudinal gradient. The marine regions had different assemblages of viruses. Cyanophages and a newly discovered clade of single-stranded DNA phages dominated the Sargasso Sea sample, whereas prophage-like sequences were most common in the Arctic. However most viral species were found to be widespread. With a majority of shared species between oceanic regions, most of the differences between viral assemblages seemed to be explained by variation in the occurrence of the most common viral species and not by exclusion of different viral genomes. These results support the idea that viruses are widely dispersed and that local environmental conditions enrich for certain viral types through selective pressure.  相似文献   

18.
Urban expansion threatens global biodiversity through the destruction of natural and semi-natural habitats and increased levels of disturbance. Whilst woodlands in urban areas may reduce the impact of urbanisation on biodiversity, they are often subject to under or over-management and consist of small, fragmented patches which may be isolated. Effective management strategies for urban woodland require an understanding of the ecology and habitat requirements of all relevant taxa. Yet, little is known of how invertebrate, and in particular moth, assemblages utilise urban woodland despite being commonly found within the urban landscape. Here we show that the abundance, species richness, and species diversity of moth assemblages found within urban woodlands are determined by woodland vegetation character, patch configuration and the surrounding landscape. In general, mature broadleaved woodlands supported the highest abundance and diversity of moths. Large compact woodlands with proportionally less edge exposed to the surrounding matrix were associated with higher moth abundance than small complex woodlands. Woodland vegetation characteristics were more important than the surrounding landscape, suggesting that management at a local scale to ensure provision of good quality habitat may be relatively more important for moth populations than improving habitat connectivity across the urban matrix. Our results show that the planting of broadleaved woodlands, retaining mature trees and minimising woodland fragmentation will be beneficial for moth assemblages.  相似文献   

19.
Variations of the pufM gene [encoding the M subunit of the photosynthetic reaction center in aerobic anoxygenic phototrophic (AAnP) bacteria] diversity in response to environmental changes were investigated in waters of six aqueous regimes (including Daotang River and five saline/hypersaline lakes on the Tibetan Plateau) representing a full salinity gradient from freshwater to NaCl-saturation. AAnP bacterial community structures responded to salinity change: Gamma-like AAnP community was predominant in freshwater Daotang River (0.01% salinity). AAnP community structure shifted from Loktanella-like sequences of the Alphaproteobacteria in saline Qinghai Lake to Roseobacter-like sequences in hypersaline lakes (Gahai, Xiaochaidan and Charhan). In addition to salinity, other environmental variables (e.g. N and P availability, TOC and/or DOC, and HCO? 3/CO2? 3 ions) were also important in affecting the pufM gene diversity in hypersaline lakes. These data have important implications for our understanding of the response of AAnP bacterial community to environmental variables in high-altitude aquatic ecosystems.  相似文献   

20.
The appearance of spider (Araneae) and beetle (Coleoptera) assemblages found in nests of great reed warbler Acrocephalus arundinaceus was studied, firstly to investigate breeding success and the amount of precipitation as potential factors which might affect the abundance and species richness of both groups. In addition, we compared the diversity of spider and beetle assemblages between nests found in different reed habitats, and considered the position of nests (above water or dry ground). In this study we selected five different randomly chosen reed habitats: two mining ponds, two small canals and one large canal. Great Reed Warbler nests were collected either shortly after fledging, or after the clutch had failed. Altogether, 12 species of spider and 19 species of beetle were collected. In both groups there was no significant difference in abundance between successful, lost and cuckoo-parasitized nests; however, there was a significant difference in species richness between the three nest categories in spider assemblages, which was not the case in beetle assemblages. The amount of precipitation did not affect beetle or spider abundance; only the species richness of spiders showed significant growth. Furthermore, we found no significant relationship between vegetation cover and the species richness and abundance of spiders and beetles. The diversity of both groups differed significantly according to reed habitat: beetle assemblages were most diverse by the large canal and spiders at the mining ponds.  相似文献   

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