Evolutionary history of the Corallinales (Corallinophycidae, Rhodophyta) inferred from nuclear, plastidial and mitochondrial genomes

Systematics of the red algal order Corallinales has a long and convoluted history. In the present study, molecular approaches were used to assess the phylogenetic relationships based on the analyses of two datasets: a large dataset of SSU sequences including mainly sequences from GenBank; and a combined dataset including four molecular markers (two nuclear: SSU, LSU; one plastidial: psbA; and one mitochondrial: COI). Phylogenetic analyses of both datasets re-affirmed the monophyly of the Corallinales as well as the two families (Corallinaceae and Hapalidiaceae) currently recognized within the order. Three of the four subfamilies of the Corallinaceae (Corallinoideae, Lithophylloideae, Metagoniolithoideae) were also resolved as a monophyletic lineage whereas members of the Mastophoroideae were resolved as four distinct lineages. We therefore propose to restrict the Mastophoroideae to the genera Mastophora, Metamastophora, and possibly Lithoporella in the aim of rendering this subfamily monophyletic. In addition, our phylogenies resolved the genus Hydrolithon in two unrelated lineages, one containing the generitype Hydrolithon reinboldii and the second containing Hydrolithon onkodes, which used to be the generitype of the now defunct genus Porolithon. We therefore propose to resurrect the genus Porolithon for the second lineage encompassing those species with primarily monomerous thalli, and trichocyte arrangements in large pustulate horizontal rows. Moreover, our phylogenetic analyses revealed the presence of cryptic diversity in several taxa, shedding light on the need for further studies to better circumscribe species frontiers within the diverse order Corallinales, especially in the genera Mesophyllum and Neogoniolithon.     

植物分类学在化石珊瑚藻(珊瑚藻目,红藻门)中的应用

最近有人认为将化石藻类的分类归入现生藻类分类单元有利于珊瑚藻作为古环境的标志,便于理解该类群的演化。然而,这样分类可能很难,因为并不是所有现生藻类分类特征都能在化石种中保存下来。Sporolithacea科的钙化部分(独立或者聚集的孢子囊群)的出现,可以把它们与这个类群的另一个现生科Corallinaceae区别开,这个科在生殖窠中产生孢子囊。节片的有无,丝间细胞的联系类型,生殖窠中孢子囊释放的数目都是用来划分Coral1inaceae科的亚科的标准,在化石样品中也可以用合适的条件进行观察。在大多数情况下,对现生珊瑚藻类属的划分特征可以在化石藻类中鉴别出来,但在几种现生珊瑚藻没有钙化的生殖结构或发育特征。因此,它们生殖结构无法与相应的化石藻类进行对比,也不能进行化石藻类的分类。近年来的趋势认为生殖结构和发育特征是对现生珊瑚藻进行分类的优先鉴定标准,然而,某些特征的稳定性在属的划分上仍然存在争论。在许多情况下,现生藻类的分类标准特征都不能在化石中保存,对古生物化石的分类标准的最佳选择是在化石藻类中选择辅助的,并且可以识别的其它鉴定特征,或者应用非正式的比现生藻类代表定义更宽的属名。     

A new genus of Mantispidae (Insecta: Neuroptera) from the Eocene of Germany, with a review of the fossil record and palaeobiogeography of the family

A new mantispid genus and species Symphrasites eocenicus gen. sp. nov. is described from the Middle Eocene of the Messel Pit fossil site, Germany. It has been placed, with confidence, in the subfamily Symphrasinae, the fossils of which were previously unknown. A review of the known fossil species of Mantispidae is provided, and their systematic placements are discussed. Liassochrysa stigmatica Ansorge & Schlüter, 1990 is assigned to Mantispidae, and therefore Liassochrysidae is a new synonym of Mantispidae; a second, more complete specimen of Mesomantispa sibirica Makarkin, 1997 is described from the Early Cretaceous Baissa locality, Russia; Mantispidiptera Grimaldi, 2000 is excluded from the family; Vectispa Lambkin, 1986 is referred to subfamily Mantispinae; and the assignment of Whalfera Engel, 2004 to Rhachiberothidae is validated. The origin and palaeobiogeography of the mantispids are briefly discussed: the concept of ousted relicts – which assumes that former widely distributed taxa were replaced with groups originating in the tropics – is assumed to best explain the present distribution of the family.  © 2007 The Linnean Society of London, Zoological Journal of the Linnean Society , 2007, 149 , 701–716.     

THE PHYLOGENY OF CAULERPA BASED ON RDNA INTERNAL TRANSCRIBED SPACER SEQUENCES

Phylogenetic hypotheses for the pantropical marine green algal genus, Caulerpa , were inferred based on analyses of nuclear-encoded rDNA internal transcribed spacer (ITS) sequences. Results of these analyses were used to assess the correspondence between rDNA phylogeny and traditional sectional taxonomy, to identify synapomorphic morphological characters (including assimilator morphology and chloroplast ultrastructure), and to examine marine biogeographic hypotheses for the genus. Ribosomal DNA ITS sequences were aligned for thirty-three species and intraspecific taxa of Caulerpa. Results indicate limited correspondence between phylogeny and sectional taxonomy for the genus, (e.g., the sections Filicoideae and Sedoideae were not monophyletic). In contrast, chloroplast morphology could be mapped to the tree topology with limited homoplasy. Pantropical isolates of the filicoidean species, Caulerpa sertularioides and Caulerpa mexicana each formed monophyletic groups. Caulerpa reyesii was included as a derived taxon within the Caulerpa taxifolia clade, suggesting that these species were conspecific and affirmed the lack of correspondence between phylogeny and assimilator morphology. Isolates and various intraspecific taxa of Caulerpa racemosa did not form a monophyletic group. Instead, these taxa formed a heterogeneous assemblage with other sedoidean and filicoidean taxa. Within the C. sertularioides clade, Caribbean and Atlantic isolates formed a basal paraphyletic group, whereas eastern and western Pacific isolates formed a more derived monophyletic group. Therefore, these results are not consistent with an Indo-West Pacific origin of this species.     

The phylogeny and taxonomy of Hippopotamidae (Mammalia: Artiodactyla): a review based on morphology and cladistic analysis

The phylogeny and taxonomy of the whole family Hippopotamidae is in need of reconsideration, the present confusion obstructing palaeoecology and palaeobiogeography studies of these Neogene mammals. The revision of the Hippopotamidae initiated here deals with the last 8 Myr of African and Asian species. The first thorough cladistic analysis of the family is presented here. The outcome of this analysis, including 37 morphological characters coded for 15 extant and fossil taxa, as well as non-coded features of mandibular morphology, was used to reconstruct broad outlines of hippo phylogeny. Distinct lineages within the paraphyletic genus Hexaprotodon are recognized and characterized. In order to harmonize taxonomy and phylogeny, two new genera are created. The genus name Choeropsis is re-validated for the extant Liberian hippo. The nomen Hexaprotodon is restricted to the fossil lineage mostly known in Asia, but also including at least one African species. The genus Hippopotamus is confirmed. These changes represent substantial advances for understanding the evolutionary history of the Hippopotamidae, and provide a new framework for future studies.  © 2005 The Linnean Society of London, Zoological Journal of the Linnean Society , 2005, 143 , 1–26.     

High species diversity in one of the dominant groups of spiders in East African montane forests (Araneae: Pholcidae: Buitinga n. gen., Spermophora Hentz)

The six-eyed pholcid spiders of East Africa are revised. A new genus is recognized, Buitinga n. gen ., with 17 new species and three species transferred from Spermophora Hentz. The new genus is characterized by the presence of a scape on the epigynum. This scape may be straight or tightly curled up at rest, and is usually highly expandable. Seven additional African and Comoran species are newly described and tentatively assigned to Spermophora . A data matrix with 60 characters and 77 taxa (including 20 East African species and 25 additional Spermophora and ' Spermophora -like' species) is analysed cladistically. Buitinga is closer to the genera Paramicromerys Millot (endemic in Madagascar) and Spermophorides Wunderlich (Mediterranean and Canary Islands) as well as to several African and Comoran species tentatively assigned to Spermophora than to the type species of Spermophora . It is argued that current estimates of species numbers may be inaccurate and that pholcids may turn out to be one of the most diverse spider families.  © 2003 The Linnean Society of London. Zoological Journal of the Linnean Society, 2003, 137, 555−619     

Phylogeny of the Saprininae reveals interesting ecological shifts in the history of the subfamily (Coleoptera: Histeridae)

A morphological data set for the histerid beetle subfamily Saprininae comprising 95 adult morphological characters scored (multistate coding) from 72 terminal taxa and four outgroups was developed in order to analyse and determine the relationships amongst the genera and subgenera of the Saprininae subfamily. Cladograms were rooted with exemplars of Dendrophilinae (genus Dendrophilus), Bacaniini (genus Bacanius), Abraeinae (genus Chaetabraeus), and Anapleini (genus Anapleus). Parsimony‐based phylogenetic analyses were performed based on the type species of each genus and subgenus of the Saprininae occurring around the world, with the exception of three taxa: Paramyrmetes foveipennis (type species of the genus Paramyrmetes), Satrapister nitens (type species of the genus Satrapister) and Xerosaprinus (Auchmosaprinus) laciniatus (type species of the subgenus Auchmosaprinus) that were not available. In addition, in order to test the monophyly of several questionable genera, multiple exemplars were added in a few cases. The analysis also included an exemplar of an apparently undescribed genus. The results of the analysis confirm the monophyly of the subfamily supported by two unique synapomorphies: (1) presence of sensory structures of the antenna; and (2) presence of the antennal cavity, as well as several other weaker synapomorphies. However, the phylogeny inferred here shows mostly low support for the deeper branches and consequently no major changes in the Saprininae classification are proposed. The presented cladogram is discussed together with its implications for the evolution of the subfamily. The most informative characters and their respective states are outlined. Multiple shifts in lifestyles have evolved during the evolutionary history of the group. Taxa found near the root of the cladogram are mostly nidicolous or myrmecophilous, and inquiliny is presumed to be the plesiomorphic lifestyle of the subfamily. The nidicolous lifestyle has undergone several transformations to other lifestyles and myrmecophily has evolved three times independently during the evolution of the subfamily. Termitoxeny has evolved two times independently in the group whereas ecological adaptation for life in caves has likewise evolved two times independently. The analyses yielded a large clade of predominantly psammophilous taxa; psammophily is thought to have evolved once and has been subsequently lost several times. © 2014 The Linnean Society of London     

The fossil record of Glypturus Stimpson, 1866 (Crustacea,Decapoda, Axiidea,Callianassidae) revisited,with notes on palaeoecology and palaeobiogeography

Abstract: The fossil record of the callianassid genus Glypturus (Decapoda, Axiidea) is re‐evaluated. Our systematic revision, both of extant and fossil taxa, is based on major cheliped morphology only, thus providing an important impetus for palaeontological studies. Both spination and tuberculation of chelipeds are herein considered of great taxonomic importance. Presence of spines on the upper margins of the merus and propodus and the lower margin of the carpus are significant for generic assignment, whereas the extent of tuberculation on lateral surfaces of the propodus is important for assignment at the species level. Altogether, four extant and six exclusively fossil species of Glypturus are recognized. Several extinct callianassid taxa are now transferred to the genus, namely Callianassa berryi, Callianassa fraasi, Callianassa munieri, Callianassa pugnax and Callianassaspinosa; Callianassa pseudofraasi is considered a junior synonym of C. fraasi. Based on a comparison of ecological preferences of extant representatives, the presence of Glypturus in the fossil record is considered to be linked with tropical to subtropical, nearshore carbonate environments of normal salinity. We argue that Glypturus is of Tethyan origin, with a stratigraphical range going as far back as the Eocene. Since then, the genus migrated both westwards and eastwards, establishing present‐day communities in the western Atlantic and Indo‐West Pacific which both comprise several distinct species. In the presumed area of origin, the genus does no longer occur today. The exlusively fossil (middle Eocene) genus Eoglypturus from Italy is considered closely related to Glypturus and is thus assigned to the subfamily Callichirinae as well.     

SKULL MORPHOLOGY AND PHYLOGENETIC RELATIONSHIPS OF A NEW DIMINUTIVE BALAENID FROM THE LOWER PLIOCENE OF BELGIUM

Abstract:  A new small balaenid is described and compared to all fossil and living balaenid taxa. The specimen represents a new genus and species and is named Balaenella brachyrhynus . It was discovered in the Lower Pliocene of Kallo (north-west Antwerp, Belgium) and adds new information on the diversity and evolution of Balaenidae. Based on both comparative morphology and phylogenetic analysis, Balaenella brachyrhynus is morphologically closer to the genus Balaena , including the living Greenland Bowhead whale ( B. mysticetus ), and two Pliocene species ( B. montalionis and B. ricei ) from central Italy and the eastern USA. Balaenella brachyrhynus has very short nasals, a short rostrum relative to the total skull length and a horizontal supraoccipital. A cladistic treatment of 81 morphological character states scored for 10 balaenids and nine non-balaenid cetaceans revealed that the other small balaenids generally included in the genus Balaenula (including Balaenula astensis, B. balaenopsis and a Pliocene Balaenula sp. from Japan) are closer to the living genus Eubalaena (the Right whale). As the new skull is so different from the nominal Balaenula species, and as it is more closely related to Balaena than to Eubalaena , it is concluded that a small body size was a common condition in different Balaenidae clades.     

Phylogeny of the Cardiidae (Mollusca, Bivalvia): Protocardiinae, Laevicardiinae, Lahilliinae, Tulongocardiinae subfam. n. and Pleuriocardiinae subfam. n.

In a preliminary cladistic analysis of the bivalve family Cardiidae (Schneider 1992), members of the subfamilies Protocardiinae, Lahilliinae, and Laevicardiinae, plus the genus Nemocardium , were found to be the least derived taxa of cardiids. A cladistic analysis is undertaken of the genera and subgenera of these cardiid taxa, plus several Mesozoic taxa which have never been assigned to any subfamily. The Late Triassic Tulongocardium , which is placed in Tulongocardiinae subfam. n., is the sister taxon to all other cardiids. Protocardiinae is restricted to the genus Protocardia. Most other Mesozoic taxa which have been placed in the Protocardiinae are found to be members of the Lahilliinae. Nemocardium is placed in the Laevicardiinae. Incacardium, Pleuriocardia , and Dochmocardia form a monophyletic group, Pleuriocardiinae subfam. n. Pleuriocardiinae, Laevicardiinae, and the remaining members of the Cardiidae (herein informally termed "cucardiids") form a monophyletic group.     

陕西蓝田公王岭“蓝田伟猴”化石的再研究

蓝田公王岭动物群中,唯一的一种非人灵长类化石由胡长康、齐陶(1978)定名为Megamacaca lantianensis(蓝田伟猴)。但按其形态,我们觉得把它归于疣猴亚科比较适宜。特别是与该亚科中的金丝猴属(Rhinopithecus)更为相像,例如蓝田标本下颌支与下颌体垂直,冠状突略向后弯,齿尖起伏较大等都显示了金丝猴的一般性质。至此,本文将蓝田伟猴归于金丝猴属,保留原有种名:Rhinopithecus(Megamacaca)lantianensis(Hu and Qi)。时代为早更新世晚期。     

Cymbonotus (Compositae: Arctotideae, Arctotidinae): an endemic Australian genus embedded in a southern African clade

The Compositae (Asteraceae) is the largest flowering plant family if described, accepted taxa are considered. Recent revisions in the taxonomy of the family have resulted in the recognition of ten subfamilies and 35 tribes. The tribe Arctotideae is one of the smallest, with around 200 species; it contains two subtribes and several hard-to-place taxa. Previous work has shown that the subtribe Arctotidinae is well defined and is restricted to southern Africa, except for the Australian genus Cymbonotus . Molecular data from internal transcribed spacer (ITS), ndh F, and trn L-F sequences were used (24 previously published sequences; 47 new sequences) to determine the patterns of relationships within the subtribe. Twenty-three samples from the ingroup, including members of all genera and all three species of Cymbonotus , were included in the analysis, together with two outgroup taxa. Cymbonotus is monophyletic and deeply embedded in the subtribe; Haplocarpha is paraphyletic and basal in position; all other genera are monophyletic; however, Arctotis has over 60 species and only eight were sampled for this study, so additional work may prove otherwise. Arctotis is nested high in the tree and has short branch lengths; this may reflect recent radiation. By contrast, the species of the paraphyletic and basal Haplocarpha have long branches, which may indicate an older radiation and a shared ancestry with the remainder of the subtribe. The presence of Cymbonotus in Australia is most probably the result of long-distance dispersal.  Journal compilation © 2007 The Linnean Society of London, Botanical Journal of the Linnean Society , 2007, 153 , 1–8. No claim to original US government works     

A SURVEY OF FLORAL ANATOMY IN ARACEAE

Flowers of 23 species representing six subfamilies of Araceae were studied by means of serial cross sections, special attention being given to vascular patterns and to taxa of supposed phylogenetic importance. Floral structure is shown to be extremely diverse with no unifying pattern common to all subfamilies. Conclusions include the following: (1) Lysichiton has a specialized gynoecial vascular pattern which differs from others encountered in the survey and which weighs against the primitive position attributed to this genus by Hutchinson. (2) Philodendron, with its multiple stylar canals, cannot have originated from subfamily Pothoideae, as Engler's phylogenetic concept would require of all Araceae; instead, it appears that several syncarpous evolutionary lines have evolved independently from extinct apocarpous members of the family. (3) In Acorus, stamens are introrse and dorsal carpellary bundles are lacking; these characters and others justify the recognition of Acorus as a separate subfamily Acoroideae. In addition, the survey revealed a peculiar deterioration of the inner ovary wall and the septa in several taxa, apparently a normal feature of floral development. Spathiphyllum solomonense Nicolson is described in an appendix.     

Out of the Neotropics: newly discovered relictual species sheds light on the biogeographical history of spider ants (Leptomyrmex,Dolichoderinae, Formicidae)

Spider ants of the genus Leptomyrmex Mayr (Hymenoptera: Formicidae: Dolichoderinae) are conspicuous species of Australasian rainforests, with putative fossil relatives in the Neotropics and Europe. There is longstanding debate over the biogeographical history of the genus, with the Palaearctic and Neotropical regions proposed as alternate centres of origin. We propose a resolution of this debate with the recent discovery and analysis of an extant species from central Brazil, L. relictus sp.n. , which we describe from workers, males and brood. We sequence ten nuclear genes in the new species and in several Australian Leptomyrmex species, and append these data to a 54‐taxon, 10‐gene data matrix previously generated for the subfamily Dolichoderinae. We conduct phylogenetic and divergence dating analyses, and re‐evaluate the fossil record of the group. We recover Leptomyrmex relictus sp.n. as a member of the Leptomyrmex clade with high support. It is sister to the Australasian species, and the genus Leptomyrmex is, in turn, sister to a pair of Neotropical genera, Forelius and Dorymyrmex. We infer a Neotropical origin for the genus and estimate a mid‐Eocene (46 Ma, 95% CI 56 to 36 Ma) origin for the crown genus and an Oligocene origin for the Australasian clade (29 Ma, 95% CI 40 to 19 Ma). We confirm placement of the Dominican amber species ?L. neotropicus Baroni Urbani in the genus but reject a close relationship with the Palaearctic fossil taxa ?Leptomyrmula Emery and ?Usomyrma Dlussky, Radchenko & Dubovikoff, considering them incertae sedis in the subfamily (Dolichoderinae). In contrast to the mesophilic preferences of the Australasian species of Leptomyrmex, the new Brazilian species inhabits cerrado (dry savannah). Our results support a Neotropical origin for spider ants with dispersal to Australia. Rafting on west‐bound currents and/or a historical diversity imbalance between Australia and South America are proposed as alternate hypotheses to explain a pattern of biased E–W mid‐Tertiary dispersal for ants with austral distributions. This pattern is suggested by our results in conjunction with observations of other ant clades. Overall, our findings highlight the value of integrated taxonomy, critical interpretation of morphology, and a comparative phylogenetic framework when conducting palaeontological and biogeographical studies of insect species. This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:6E9E6617‐6E53‐40B8‐82C7‐67F89A83C553 .     

The Gomphaeschninae (Odonata: Aeshnidae): new fossil genus, reconstructed phylogeny, and geographical history

ABSTRACT. Three new species of fossil Anisoptera (dragonflies) are reported from Tiffanian (Late Palaeocene) sediments of the Paskapoo Formation, near Red Deer, Alberta, Canada. The three species are all assigned to the new genus Alloaeschna , which is classified in the subfamily Gomphaeschninae.
Phylogenetic analysis of gomphaeschnine wing venation suggests that the subfamily is paraphyletic, with derived gomphaeschnines such as Boyeria and Linaeschna more closely related to the Brachytroninae and Aeshninae than are other gomphaeschnines. One of the most primitive gomphaeschnines, and the oldest fossil form, is the Jurassic Morbaeschna. Parallelism, convergence and reversal in the evolution of features of the wing venation is common.
The new genus Alloaeschna is at about the same evolutionary grade as the old-world genus Oligoaeschna and the new-world genus Gomphaeschna , and is one of the more primitive known members of the Gomphaeschninae. The new species are the first recorded Palaeocene gomphaeschnines and the oldest known gomphaeschnines from the Americas.
Several extant genera have fossil representatives on continents different from those on which they now survive, suggesting repeated crossing of land bridges and/or widespread ancestral species prior to the separation of the continents, and subsequent extinction leading to present relict distributions.     

INVESTIGATIONS OF ANGIOSPERMS FROM THE EOCENE OF NORTH AMERICA: STIPULATE LEAVES OF THE RUBIACEAE INCLUDING A PROBABLE POLYPLOID POPULATION

A comparative study was made of the gross morphology, fine venation and cuticular features of Leitneria fioridana Chapman, the single living representative of the order Leitneriales and Leitneria eocenica (Berry) Brown, presumbaly a related fossil species. In addition to the type material, newly collected fossil specimens were investigated from clay pits in the Middle Eocene, Claiborne Formation, of western Tennessee and Kentucky. Foliate stipules attached to the petioles of several specimens suggest the assignment of this fossil leaf type to the genus Leitneria is incorrect. The nature of the gross morphology, fine venation and cuticular features confirms the misidentification. Previously, various specimens of this fossil leaf type have been placed in eight species of seven genera in seven families of six angiosperm orders, none of which are correct systematically. The gross morphology, venation and cuticular characters of the fossil leaf are distributed among a few extant South American genera of arborescent Rubiaceae. The fossil is an extinct rubiaceous leaf type which cannot be placed within a single modern subfamily, tribe or genus of the family. The organ genus, Paleorubiaceophyllum is proposed for these leaves. Three varieties of a single fossil species, P. eocenicum, are recognized. One variety with epidermal cells nearly twice the size of the others may represent a polyploid population.