转录调控因子WRKY 超级家族: 起源、结构和功能*

WRKY 蛋白质是一个植物特有的超级转录调控因子家族, 在拟南芥和水稻基因组中分别拥有至少74 个和97 个成员。最古老的WRKY 转录调控因子拥有2 个高度保守的WRKY 结构域, 可能起源于15~ 20 亿年前的真核生物。虽然所有WRKY 蛋白质主要通过特异地结合靶基因启动子区域的W 盒序列而调控其表达, 但各家族成员基因的生物学功能存在着各自的特异性。本文详细总结了WRKY 蛋白质在调控植物发育和逆境诱导反应的信号转导途径建立等方面的分子生物学功能。     

转录调控因子WRKY超级家族:起源、结构和功能

WRKY蛋白质是一个植物特有的超级转录调控因子家族,在拟南芥和水稻基因组中分别拥有至少74个和97个成员。最占老的WRKY转录调控因子拥有2个高度保守的WRKY结构域,可能起源于15～20亿年前的真核牛物。虽然所有WRKY蛋白质主要通过特异地结合靶基因启动子区域的W盒序列而调控其表达,但各家族成员基因的生物学功能存在着各自的特异性。本文详细总结了WRKY蛋白质在调控植物发育和逆境诱导反应的信号转导途径建立等方面的分子生物学功能。     

植物WRKY转录因子结构及功能研究进展

WRKY蛋白是植物所特有的转录因子家族.因WRKY结构域中的N-端均含有高度保守的WRJKYGQK氨基酸序列而得名.它能够与(T)TGACC(A/T)序列(W*box)发生特异性作用,调节启动子中含W-box元件的调节基因或功能基因的表达,从而参与植物的各种防卫反应,调节植物的发育和代谢等.近些年来.有关WRKY转录因子的研究很多,如模式生物中的拟南芥和水稻基因组中拥有大量的WRKY成员.主要介绍WRKY转录因子的结构特点及生物学功能.     

转录因子KLF8基因结构及其功能研究进展

随着分子生物学研究的进展,机体各种生物学特性的影响都在分子水平上寻求到原因。转录因子作为调节基因转录的重要蛋白质,一直在被人们进行种类发掘及功能鉴定。KLF8(Krüppel-like factor 8)是属于KLFs(Krüppel-like factors)家族中的一种转录因子,对细胞侵袭和上皮-间质转化、细胞致癌性转化和肿瘤、细胞周期循环、脂肪细胞分化等方面有着深远影响。由于其在生物学功能上的多方面影响,使其逐渐成为科研人员探究的热点。对该转录因子的结构和作用已经有了深入的了解。现就KLF8基因与蛋白质的分子结构和生物学特性研究进展进行综述,可为该基因作为遗传标记奠定基础并以期为相关研究如癌症调控、肥胖治疗及基础研究等提供参考。     

植物bHLH转录因子的结构特点及其生物学功能

bHLH(basic/helix-loop-helix)转录因子在真核生物的生长发育过程中起着重要的调控作用,它们组成了转录因子中的一个大家族。bHLH转录因子不仅普遍参与了植物的生长发育,包括毛状体的发生、光形态建成和光信号转导,而且在植物响应逆境胁迫和次生代谢方面也具有重要作用。对植物bHLH转录因子的结构特点及其生物学功能进行综述。     

北京中医药大学中药学院

转录因子是能够结合某基因上游特异核苷酸序列上的蛋白质,活化后从胞质转位至胞核,通过识别和结合基因启动子区的顺式作用元件,启动和调控基因表达。真核生物在转录水平上的基因表达调控,影响和控制着细胞和生物个体的许多生物学过程。本文综述了转录因子的结构、分类以及其在植物干旱胁迫中发挥的作用。     

干扰素调节因子新剪接异构体IRF7-e的结构及功能

干扰素调节因子7是诱导玉型干扰素表达的最主要的转录因子。寻找IRF7新的剪接异构体,研究其结构及功能,为探索IRF7参与调控玉型干扰素机制的多样性提供基础。通过PCR和Sanger测序获得了IRF7一种新的剪接形式IRF7-e,并通过RACE获取了IRF7-e 基因全长。IRF7-e全长为1994 bp,含5'-UTR 410 bp,3'-UTR 120 bp,开放阅读框1464 bp,编码487个氨基酸的蛋白,预测其等电点为6.659,蛋白分子量为52.8 kD。双荧光素酶报告分析表明过表达IRF7-e能够提高玉型干扰素IFNα和IFNβ启动子的活性,其中对IFNα启动子活性提高了12.18倍,对IFNβ的启动子活性提高了2.99倍。表明IRF7-e可能参与玉型干扰素的调控。     

A genome-wide analysis of sumoylation-related biological processes and functions in human nucleus

Protein sumoylation is an important reversible post-translational modification of proteins in the nucleus, and it orchestrates a variety of the cellular processes. Genome-wide analysis of functional abundance and distribution of Small Ubiquitin-related MOdifier (SUMO) substrates may shed a light on how sumoylation is involved in nuclear biological processes and functions. Two interesting questions about sumoylation have emerged: (1) how many SUMO substrates exist in mammalian proteomes, such as human and mouse, (2) and what are their functions and how are they involved in a variety of biological processes? To address these two questions,we present an in silico genome-scale analysis for SUMO substrates in human. Based on the pattern recognition and phylogenetic conservation, we retrieved a list of 2683 potential SUMO substrates conserved in both human and mouse. Then, by functional enrichment analysis, we surveyed the over-represented GO terms and functional domains of them against the whole human proteome. Besides the consistence between our analyses and in vivo or in vitro work, the in silico predicted candidates also point to several potential roles of sumoylation, e.g., perception of sound. These potential SUMO substrates in human are of great value for further in vivo or in vitro experimental analysis.     

Binding of Erythroagglutinating Phytohemagglutinin Lectin from Phaseolus vulgaris to the Epidermal Growth Factor Receptor Inhibits Receptor Function in the Human Glioma Cell Line, U373 MG

Abstract: Little is known about the role of the N -linked oligosaccharides in the function of the epidermal growth factor (EGF) receptor (EGF-R). In a human glioma cell line, U373 MG, EGF-Rs contain the bisecting N -linked oligosaccharide sequence recognized by erythroagglutinating phytohemagglutinin lectin from Phaseolus vulgaris (E-PHA). Incubation of E-PHA with cultured U373 MG cells results in inhibition of EGF binding to its receptor and consequently inhibition of EGF-induced autophosphorylation of the receptor. Consistent with the inhibitory effects on the EGF-R, phenotypic events that depend on EGF-R signaling, such as cell spreading and proliferation, were also found to be modified. The effect of this lectin seems to be specific because leukoagglutinating phytohemagglutinin lectin from P. vulgaris (L-PHA), an isolectin of E-PHA, had no effect on EGF-R activity or the biological functions of these cells even though L-PHA was able to bind to the EGF-R. These findings suggest the presence of an important bisecting N -linked oligosaccharide structure in close proximity to the EGF binding site on the receptor. Furthermore, these results suggest the possibility that E-PHA lectin binding may provide an additional approach to blocking EGF-dependent glioma cell growth.     

逆境胁迫诱导基因的结构、功能与表达调控

对有关逆境响应基因的最新进展作了一简要的综述.在逆境条件下,脱落酸(ABA)浓度增加,诱导许多新的基因表达及蛋白质合成.已克隆到几百种逆境响应基因,其中大多数可受外源ABA的诱导.对这些基因及蛋白质的功能已有所了解,认为它们可能与植物的抗逆能力有关.目前认为有多条信号传递途径参与胁迫信号的转导.     

Rat alpha1-macroglobulin enhances nerve growth factor-promoted neurite outgrowth, TrkA phosphorylation, and gene expression of pheochromocytoma PC12 cells

Monoamine-activated human alpha2-macroglobulin (alpha2M) has been previously demonstrated to inhibit TrkA-, TrkB-, and TrkC-mediated signal transduction. Rat alpha1-macroglobulin (alpha1M) and alpha2M are structural homologues of human alpha2M, but rat alpha1M is distinctly different from rat alpha2M in many ways and its role in the mammalian nervous system is unknown. In this report, monoamine-activated rat alpha1M was demonstrated to enhance in a dose-dependent manner nerve growth factor (NGF)-promoted neurite outgrowth in pheochromocytoma PC12 cells. Monoamine-activated alpha1M by itself, however, was neither neurotrophic nor mitogenic to PC12 cells. To investigate further its possible mode of action, the ability of monoamine-activated alpha1M and normal alpha1M to bind and to activate the NGF receptor (TrkA) was investigated. Monoamine-activated alpha1M formed a more stable complex with TrkA than normal alpha1 M, but the binding of monoamine-activated alpha1M to TrkA was adversely affected by prior stimulation of TrkA with NGF. In addition, monoamine-activated alpha1M enhanced the NGF-promoted TrkA phosphorylation and up-regulated the expression of NGF-inducible immediate-early genes (c-jun and NGFI-A) and delayed-response genes (SCG10 and transin) in PC12 cells; normal alpha1M, in contrast, produced little or no effect. This study demonstrates that alpha1M, the constitutive form of alpha-macroglobulin in the rat, possesses the ability to promote NGF-mediated differentiation in PC12 cells, possibly via its direct action on TrkA receptors and TrkA-mediated signal transduction and gene expression.     

重组人巨噬细胞集落刺激因子的结构与功能

重组人粒细胞──巨噬细胞集落刺激因子(rhGM-CSF) 已经在原核、真核细胞表达并得到纯品,为它的结构与功能研究提供了有利条件．目前国内外对于rhGM-CSF的结构与功能研究主要集中在晶体结构、化学修饰、溶液中构象和稳定性以及突变和分子设计方面．分子结构与功能的关系以及与GM-CSF受体作用机理研究也取得了突破性进展．     

神经生长因子结构与功能研究进展

神经生长因子(NGF)是神经营养因子家族的典型代表, 它控制着脊椎动物周围和中枢神经系统中部分神经元的发育和存活.NGF的三维结构是以“胱氨酸结”和β折叠为基础,它以二聚体的形式结合细胞表面的受体从而发生生物学效应.参与这些反应的氨基酸残基已通过化学修饰和定点突变法加以确定,这有助于更进一步理解其结构与功能的关系.     

Nerve Growth Factor Determines Survival and Death of PC12 Cells by Regulation of the bcl-x, bax, and caspase-3 Genes

We investigated the effects of nerve growth factor (NGF) and NGF withdrawal on expression of members of the bcl-2 family of genes and caspase-3 in PC12 cells. NGF regulated several members of the bcl-2 family and caspase-3 in a manner consistent with its effect on apoptosis in PC12 cells. Levels of bcl-xl, bcl-xs, and caspase-3 mRNAs were increased by NGF treatment. The increases in caspase-3 and bcl-xs levels should have disposed the cells toward apoptosis but were opposed by the simultaneous increase in bcl-xl level. NGF withdrawal resulted in abrupt down-regulation of bcl-xl and up-regulation of bax, favoring apoptosis. Forced expression of bcl-xl after NGF withdrawal was sufficient to prevent cell death. Cell death was rapid when NGF was withdrawn after 5 days of treatment but relatively slow when NGF was withdrawn after only 1 or 2 days of treatment. This was consistent with the reduced accumulation of caspase-3 mRNA with shorter NGF treatments. These results indicate that Bcl-xl, Bcl-xs, Bax, and caspase-3 are important regulators of apoptosis in PC12 cells. Furthermore, regulation of their mRNA levels is implicated in the signal transduction of NGF.     

植物鞘脂的结构、代谢途径及其功能

众所周知,鞘脂是生物膜结构的重要组成成分,随着鞘脂在动物和酵母中的深入研究发现,鞘脂及其代谢产物是一类很重要的活性分子,它们参与调节细胞的生长、分化、衰老和细胞程序性死亡等许多重要的信号转导过程。鞘脂在植物中的研究最近几年才开始,植物鞘脂的功能还不十分清楚。最近的研究发现,鞘脂及其代谢产物在植物中也起着很重要的信号分子作用。该文详细总结了鞘脂在植物中的结构、代谢途径和主要生物学功能,并结合实验室的工作对植物鞘脂的功能研究进行了展望。     

Structure and activity of membrane receptors: Modeling and computational simulation of ligand recognition in a three-dimensional model of the 5-hydroxytryptamine1A receptor

A three-dimensional molecular model of the transmembrane domain of the 5-HT_1A receptor (5-HT_1AR) is presented in the context of a general strategy for modeling the macromolecular structure of a guanine nucleotide binding, regulatory protein coupled receptor (GPCR). The model of the 5-HT_1AR rests on the definition of the putative residues of the ligand-binding site guided by criteria based on specific models proposed from structure-activity studies and on published results of modifications of GPCRs using methods of molecular biology. The resulting requirements for matching recognition sites in the agonist-binding pocket define the molecular details of the interaction between the agonist 5-HT and the human 5-HT_1AR that includes: (1) the interaction between the protonated amine moiety and the conserved negative Asp-116, located in TMH 3; (2) the hydrogen bond between the hydroxyl group and Thr-199, located in TMH 5; and (3) the interaction complex between the aromatic ring portion of the ligand and the neutral form of His-192, located in TMH 5. Results from quantum mechanical calculations of the interaction between an agonist and the proposed recognition pocket of the 5-HT_1AR model suggest a trigger of the receptor activation mechanism resulting from ligand binding. The antagonist-binding pocket of the human 5-HT_1AR is inferred from the interaction sites of pindolol with the receptor model: (1) the ionic interaction between the protonated amine of the ligand and the side chain of the conserved Asp-116, located in TMH 3; and (2) the hydrogen bonds between the ether oxygen and the hydroxyl group of the ligand and Asn-385, located in TMH 7. Use of the model is proposed to facilitate the identification of the structural elements of agonists and antagonists that are key for their specific functions, in order to achieve the design of new compounds with predetermined pharmacological properties.     

Bacillus Species Proteins Involved in Spore Formation and Degradation: From Identification in the Genome,to Sequence Analysis,and Determination of Function and Structure

The members of Bacillus species are Gram-positive, ubiquitous spore-forming bacilli. Several genomic sequences have been made available during recent years, including Bacillus subtilis, a model organism among this genus, Bacillus anthracis, and their analyses provided a wealth of information about spore-forming bacteria. Some members of this species can cause serious diseases in livestock and humans. An important pathogen in this group of organisms is B. anthracis, which is the causative agent of anthrax. A summary of the B. subtilis genome information, based on the publicly released sequence, that allowed for the identification and characterization of new and novel proteins of this organism as well as similar proteins from other members of Bacillus species is provided. The primary goal for this work is to present a review of the genome sequence-identified genes that encode proteins involved in the sporulation, germination, and outgrowth processes. These three processes are essential for spore development and later its transformation into a vegetative cell. Additionally, for a few selected examples of the protein products of the identified genes, the application of bioinformatics and modeling tools is illustrated in order to determine their likely structure and function. Two three-dimensional models of the structures of such proteins, PrfA endonuclease and phosphatase PhoE, are presented together with the structure-based functional conclusions. The review of such studies provides an example of how the genomic sequence can be utilized in order to elucidate the structure and function of proteins, in particular proteins of the Bacillus species. Because only a limited number of proteins of Bacillus species organisms are involved in the synthesis and degradation of spores and have been characterized to date, this genome-based analysis may provide new insights into the developmental processes of bacterial organism.