Genotyping the Heading Date of Male-Sterile Rice Line Ⅱ-32A

Ⅱ-32A, an elite male-sterile line of rice (Oryza sativa L.), has been widely used for the production of hybrid rice seed in China. Heading date in most combinations using Ⅱ-32A shows transgressive inheritance or similarity to the latter parent, but the genotype of Ⅱ-32A with respect to major genes for heading time is unknown. This limits the further exploitation of this sterile line in breeding and hybrid seed production. Using a number of major gene heading date isogenic lines and heading date QTL near-isogenic lines, we genetically analyzed Ⅱ-32B under both long- and short-day conditions. We show that Ⅱ-32B carries two photoperiod-sensitive genes, E1 and E3, a recessive late-heading gene, ef-1, and a photoperiod-sensitive allele, Se-1u. In addition we identified in Ⅱ-32B a recessive inhibitor for E1 or Se-1n and other modified photoperiod-sensitive genes. The heading-date constitution of Ⅱ-32A was determined to be E1e2E3Se-1Uef-1i-Se-1.     

水稻雄性不育系珍汕97A抽穗期的基因型分析

水稻雄性不育系珍汕97A是我国应用最大,使用最广泛的不育系,利用抽穗期基因型明确的秋光（e1e1e2e2e3e3se-1^eSe-1^e),越光（E1E1E2E2e3e3Se-1^eSe-1^e),日本晴（E1E1e2e2e3e3Se-1Se-1)和日光（E1E1E2E2e3e3Se-1Se-1)作测验品种,分析了水稻珍汕97B的抽穗期基因型,结果表明,珍汕97B的抽穗期感光基因型为：e1e1e2e2E3E3Se-1Se-1,同时还存在1对隐性感光抑制基因i-Se-1,进一步用QTL近等基因系NIL（Hd1),HIL(Hd2),NIL(Hd3),NIL(Hd5)和NIL（Hd6)进行的实验也验证了珍汕]97B 在1个显性的主效感光基因Se-1,以及其他感光修饰基因,如E3,Hd3(En-Se-1),Hd5和Hd6的基因的作用。因此,推测珍汕97A带有主效感光基因是其配制的灿型杂交稻抽穗期超亲表现的内因。     

Genotyping the Heading Date of Male-Sterile Rice Line II-32A

II-32A, an elite male-sterile line of rice （Oryza sativa L.）, has been widely used for the production of hybrid rice seed In China. Heading date In most combinations using II-32A shows transgressive Inheritance or similarity to the latter parent, but the genotype of II-32A with respect to major genes for heading time Is unknown. This limits the further exploitation of this sterile line In breeding and hybrid seed production. Using a number of major gene heading date Isogenlc lines and heading date QTL near-lsogenic lines, we genetically analyzed II-32B under both long- and short-day conditions. We show that II-32B carries two photoperlod-sensltlve genes, E1 and E3, a recessive late-heading gene, ef-l, and a photoperlod-sensltlve allele, Se-1^u. In addition we Identified In II- 32B a recessive Inhibitor for E1 or Se-1^n and other modified photoperlod-sensltlve genes. The heading-date constitution of II-32A was determined to be E1e2E3Se-1^uef-li-Se-1.     

The Distribution of Japonica Rice Cultivars in the Lower Region of the Yangtze River Valley is Determined by Its Photoperiod-sensitivity and Heading Date Genotypes

There are generally four recognized classes of japonica rice cultivars grown in the lower region of the Yangtze River valley. The geographical distribution of the four classes is latitude-dependent. Variation for heading date (HD) among 29 japonica rice cultivars grown in the lower region of the Yangtze River valley and belonging to the four classes was characterized, and their sensitivity to variations in photoperiod and temperature was analyzed. All of the cultivars were sensitive to both photoperiod and temperature. A regression analysis showed that HD is closely correlated with photoperiod sensitivity (PS). The PS of the four classes increased gradually from the medium maturing middle (MMM) types, through the late maturing middle (LMM) and early maturing late (EML) types to the medium maturing late (MML) types. Crosses with tester lines established that almost all of the cultivars carry the dominant early-heading allele at Ef-1, the photoperiod insensitive allele e_2 and the PS alleles E_1 or E_1~t. Most of the MMM, LMM and MML types carry the insensitive allele e_3, while EML types have either E_3 or E_3~t. At Se-1, MMM and LMM types have Se-1~e, some EML types have Se-1~e and others Se-1~n, while the MML types are mostly Se-1~n. The PS of some MMM, LMM and EML types is reduced by the presence of hd2. These results show that the distribution of the four rice cultivar classes from high latitude to low latitude regions depended on a gradual increase in PS, which is mainly determined by its HD genotypes.     

The Distribution of Japonica Rice Cultivars in the Lower Region of the Yangtze River Valley is Determined by Its Photoperiod-sensitivity and Heading Date Genotypes

There are generally four recognized classes of japonica rice cultivars grown in the lower region of the Yangtze River valley. The geographical distribution of the four classes is latitude-dependent. Variation for heading date (HD) among 29 japonica rice cultivars grown in the lower region of the Yangtze River valley and belonging to the four classes was characterized, and their sensitivity to variations in photoperiod and temperature was analyzed. All of the cultivars were sensitive to both photoperiod and temperature. A regression analysis showed that HD is closely correlated with photoperiod sensitivity (PS). The PS of the four classes increased gradually from the medium maturing middle (MMM) types, through the late maturing middle (LMM) and early maturing late (EML) types to the medium maturing late (MML) types. Crosses with tester lines established that almost all of the cultivars carry the dominant early-heading allele at Ef-1 , the photoperiod insensitive allele e₂ and the PS alleles E₁ or E₁^t . Most of the MMM, LMM and MML types carry the insensitive allele e₃ , while EML types have either E₃ or E₃^t . At Se-1 , MMM and LMM types have Se-1^e , some EML types have Se-1^e and others Se-1ⁿ , while the MML types are mostly Se-1ⁿ . The PS of some MMM, LMM and EML types is reduced by the presence of hd2 . These results show that the distribution of the four rice cultivar classes from high latitude to low latitude regions depended on a gradual increase in PS, which is mainly determined by its HD genotypes.     

Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivars

To dissect the genetic factors controlling naturally occurring variation of heading date in Asian rice cultivars, we performed QTL analyses using F₂ populations derived from crosses between a japonica cultivar, Koshihikari, and each of 12 cultivars originating from various regions in Asia. These 12 diverse cultivars varied in heading date under natural field conditions in Tsukuba, Japan. Transgressive segregation was observed in 10 F₂ combinations. QTL analyses using multiple crosses revealed a comprehensive series of loci involved in natural variation in flowering time. One to four QTLs were detected in each cross combination, and some QTLs were shared among combinations. The chromosomal locations of these QTLs corresponded well with those detected in other studies. The allelic effects of the QTLs varied among the cross combinations. Sequence analysis of several previously cloned genes controlling heading date, including Hd1, Hd3a, Hd6, RFT1, and Ghd7, identified several functional polymorphisms, indicating that allelic variation at these loci probably contributes to variation in heading date. Taken together, the QTL and sequencing results indicate that a large portion of the phenotypic variation in heading date in Asian rice cultivars could be generated by combinations of different alleles (possibly both loss- and gain-of-function) of the QTLs detected in this study.     

Prospect of the QTL-qSB-9^Tq utilized in molecular breeding program of japonica rice against sheath blight

The major QTL-qSB-9Tq conferring partial resistance to rice (Oryza sativa L.) sheath blight (Rhizoctonia solani Kühn) has been verified on chromosome 9 of the indica rice cultivar, Teqing. In this study, the prospect of this QTL utilized in molecular breeding program of japonica rice for sheath blight resistance was investigated. Most of the japonica rice cultivars showed lower level of sheath blight resistance than the indica rice cultivars. At the corresponding site of qSB-9Tq, nine typical japonica rice culfivars from different ecological regions or countries proved to possess the susceptible allele(s). Introgression of qSB-9Tq into these cultivars enhanced their resistance level by decreasing sheath blight score of 1.0 (0.5-1.3), which indicated that qSB-9Tq had a large potential in strengthening the resistance of japonica rice to sheath blight. The use of the three molecular markers, which were polymorphic between Teqing and many japonica rice cultivars, promotes the application of qSB-9Tq in a concrete molecular breeding program.     

水稻核不育系6442S—7显性早熟性的遗传分析

研究了早籼核不育系6442S-7与明恢63等16个中迟熟品种杂交F1及其部分组成F2和B1F1的抽穗期遗传.结果表明,6442S-7具有完全显性早熟特性,主要受2对无连锁关系的显性早熟基因控制.同时,还对IR68,献国、9311和BG1639等其他4个迟熟品种与6442S－7杂交F1和F2代,以及三交F1代的抽穗期进行遗传分析,发现IR68、献国和BG1639等4个迟熟品种均含1对等位的不完全显性抑制基因,可部分抑制6442S－7显性早熟基因的表达。认为6442S－7携带的显性早熟基因对水稻遗传改良具有重要的应用价值。     

Breeding strategies for optimum heading date using genotypic information in rice

Heading date (HD) is a key trait for the adaptation of rice cultivar to a specific growing region. Here, we report conventional and marker-assisted breeding strategies using genetic information related to the determination of HD, where the breeding objectives were to avoid the delayed heading common in indica × japonica hybrids, to increase the efficiency in selecting hybrid rice combinations having a suitable growth duration, and to develop cultivars with target growth duration by quantitative trait locus (QTL) pyramiding. The allelic constitution at the major HD loci was determined for a set of 109 leading Chinese rice cultivars by crossing them with HD tester lines. It was shown that the late heading in indica × japonica hybrids can be overcome by replacing the strong photoperiod-sensitivity allele Se-1 ⁿ with Se-1 ^e . A breeding strategy to enable the selection of hybrid combinations with suitable growth duration was proposed, based on HD genotypic information in rice. Meanwhile, a QTL analysis for HD was conducted over five years based on a recombinant inbred line population, derived from two parents Asominori (japonica) and IR24 (indica). Four QTLs, located on chromosomes 2, 3, 6, and 8, respectively, could be detected in all five years, indicating they were stably expressed QTL. According to this QTL information, and taking Asominori as an example, the HD genotypes for improving the growth duration were designed, and the best breeding selection schemes were determined by use of a genetic breeding simulation tool. Results obtained in this study demonstrate that genetic information related to HD can make a significant contribution to rice breeding.     

直播水稻茎鞘非结构碳水化合物积累与转运的遗传剖析

为了揭示水稻（Oryza sativa）茎鞘非结构碳水化合物（nonstructural carbohydrate, NSC）积累与转运的遗传基础, 在大田直播条件下, 利用来源于Lemont/特青的重组自交系群体, 对5个相关性状进行了QTL定位。始穗期和成熟期共检测到3个茎鞘NSC含量QTL, 分别位于第1、9和12染色体上, 贡献率分别为13%、7%和7%, 增效等位基因均来自特青。检测到的2个NSC转运率QTL均位于第12染色体上, 贡献率分别为8%和14%。检测到的结实率和千粒重QTL分别为3个和4个, 3个结实率QTL的贡献率分别为9%、24%和6%, 4个千粒重QTL的贡献率分别为14%、11%、12%和13%。进一步的分析表明,来自Lemont的等位基因降低成熟期茎鞘NSC含量的同时却能提高NSC转运率、结实率和千粒重, 而来自特青的等位基因对NSC转运率和结实率均有增效作用, 这为性状间表型相关提供了重要的遗传解释。     

水稻抽穗后剑叶衰老过程中光合关键酶的基因表达

协优 930 8、培矮 6 4s/ 9311和汕优 6 3三个超级高产水稻品种抽穗后 ,剑叶中光合速率减小、叶绿素含量下降、SOD活力降低和MDA含量上升的幅度不同 ,显示它们开花结实过程中叶片衰老的速度不同 ,以汕优 6 3衰老最快 ,协优 930 8最慢 ,培矮 6 4s/ 9311居中。Northern杂交和免疫定量研究表明 ,汕优 6 3和培矮6 4s/ 9311剑叶rbcS(Rubisco小亚基基因 )和rca(Ru bisco活化酶基因 )mRNA的表达随抽穗后天数的增加而下降 ,而协优 930 8在抽穗后第 10天才开始下降 ;Rubisco和Rubisco活化酶蛋白含量的下降趋势与rbcS和rcamRNA的变化趋势相似。因此 ,水稻抽穗后剑叶衰老过程中光合能力的下降与光合关键酶基因(rbcS和rca)表达下降密切相关     

一个籼稻脆性突变体的生物学特性及基因定位研究

水稻脆性突变体是研究细胞壁组分结构形成机制的重要材料。通过离子束诱变籼稻9311获得1个茎秆、叶片均脆的突变体,命名为bc9311-1。bc9311-1突变体与野生型9311相比,分蘖数减少,结实率显著降低,其他农艺性状无明显差异。叶片和茎秆的细胞壁成分分析表明,与野生型相比,bc9311-1突变体茎秆中的纤维素和木质素含量明显降低,半纤维素和SiO2含量显著增加;叶片中的纤维素含量降低,半纤维素和木质素含量增加,SiO2含量无明显差异。遗传分析表明,该脆性突变体脆性性状受单隐性基因控制。以bc9311-1突变体与02428杂交的F2群体为基因定位群体,利用SSR标记将bc9311-1突变位点定位在水稻第1染色体上,位于SSR分子标记的RM1095和RM3632之间,遗传距离分别为0.6cM和3.4cM,与其中的标记RM1183表现共分离。这些结果为进一步克隆突变基因,揭示脆性性状的分子机制奠定坚实基础。     

亚种间杂交稻颖花受精率与温度的相关性及模型分析

分析了籼粳杂种、中间型杂种、籼稻和粳稻4种类型水稻15个品种2年分期播种的观测结果,结合对应的逐日气象资料,探讨了温湿度等气象因子对亚种间杂交稻受精率的影响规律,证实了亚种间杂交稻的受精率及其稳定性一般低于籼稻和粳稻.在温度、湿度、日照的11项气象因子中,探明温度是影响受精率的主要气象因子,且以盛花前后5～7 d的日均温影响最大.建立了4种水稻受精率-温度拟合模型,计算出亚种间杂交稻的受精最适温度和安全温度分别为28.2～29.3和23.4～24.3 ℃,比籼稻和粳稻的平均值分别高2.2和1.5 ℃.用旬平均气温24～25 ℃作为亚种间杂交稻的安全齐穗期温度指标分析表明,亚种间杂交稻的安全齐穗期在华南双季稻区为9月下旬～10月上旬,长江中下游稻区提前至9月上旬,江淮一季稻区则在8月下旬～9月上旬.     

水稻多分蘖矮秆突变体htd1-2的遗传分析和基因定位

文章所采用的多分蘖矮秆突变体为htd1-2(high-tillering dwarf 1-2), 是野生型籼稻品种9311经350Gy的60Co- g射线辐射处理后产生的后代中选育出来的稳定多分蘖矮秆突变体。遗传分析表明, 突变体htd1-2多分蘖矮秆性状是由一对隐性核基因的突变造成的。文章利用简单重复序列(Simple sequence repeat, SSR)、酶切扩增多态性序列(Cleaved amplified polymorphic sequence, CAPS)和衍生型CAPS(derived CAPS, dCAPS)等分子标记的方法, 最终将多分蘖矮秆基因HIGH-TILLERING DWARF1-2(HTD1-2)定位在水稻第4号染色体116 kb的物理区间内。在该物理区间内有一个已经克隆的控制水稻分蘖的基因HIGH-TILLERING DWARF1(HTD1), 经过测序比对和dCAPS特异性分析, 认为HTD1就是HTD1-2基因。尽管突变体htd1与突变体htd1-2是等位基因的不同位点发生突变, 但是由于遗传背景的不同, 两者表型并不完全相同。此外, 通过去除分蘖芽的实验证明了突变体htd1-2的矮化部分是由于分蘖过多造成的。     

高产早籼稻群体动态结构的差异

1998年早季在广州研究了不同类型高产早籼稻群体动态结构差异,结果认为:两系法杂交稻高产新组合培矮64s/E32、培矮64s/9311、粤杂122,其幼穗第2次枝梗原基分化期以前的植株干物重、叶面积指数（LAI）比常规稻高产品种粤香占和特三矮2号表现出明显的生长优势。培矮64s/E32在5个供试材料中在始穗期的LAI最高,达7.81,干物重日增量最大,达8.76kg/亩·d;粤香占的每亩有效穗数最高,达23.3万穗/亩,收获指数是所有参试材料中唯一达到 0.6以上者。     

普通小麦抽穗期基因定位的研究

本文以物晚熟多小穗器系１０阿为被测材料,中国春和阿勃两套单体系列为测验系,对抽穗期性状进行了基因定位研究。结果表明,被测系１０阿晚抽穗,受５Ａ,１Ｂ,２Ｂ,６Ｂ和２Ｄ染色体上的隐性基因所控制。其中,２Ｄ染色体上的基因表现为强效,５Ａ,１Ｂ,２Ｂ和６Ｂ染色体上的基因表现为弱效.据前人研究和本试验结果分析认为,被测系１０阿的１Ｂ和２Ｂ染色体上可能具有控制晚熟性的新基因。     

Dissection of a major QTL for photoperiod sensitivity in rice: its association with a gene expressed in an age-dependent manner

 A proposed major quantitative trait locus (QTL) for photoperiod sensitivity on chromosome 6 in rice was examined by introducing a chromosomal segment from a sensitive line into an insensitive one. The crossing experiments showed that a range of variation in heading date occurred in the later generations and that the region might contain at least a major gene and two additional recessive genes controlling photoperiod sensitivity. Gene mapping experiments showed that the major gene was Se-1 and that a recessive gene (tentatively named se-pat) was loosely linked to it. The responses to photoperiods were examined among the different genotypes under natural and controlled conditions. The two genes acted additively on the degree of photoperiod sensitivity. However, se-pat plants showed a response to photoperiods that differed from that of the other sensitive lines; a short-day treatment at the seedling stage delayed heading in the former plants, suggesting that the manner of its expression was age-dependent. A recessive gene similar to se-pat seemed to be widely distributed in wild and cultivated rice, suggesting that the gene complex in the region plays a significant role in response to photoperiod. Received: 8 October 1997 / Accepted: 1 April 1998     

Roles of the Hd5 gene controlling heading date for adaptation to the northern limits of rice cultivation

During the diversification of cultivated rice after domestication, rice was grown in diverse geographic regions using genetic variations attributed to the combination of alleles in loci for adaptability to various environmental conditions. To elucidate the key gene for adaptation in rice cultivars to the northern limit of rice cultivation, we conducted genetic analyses of heading date using extremely early-heading cultivars. The Hd5 gene controlling heading date (flowering time) generated variations in heading date among cultivars adapted to Hokkaido, where is the northernmost region of Japan and one of the northern limits of rice cultivation in the world. The association of the Hd5 genotype with heading date and genetical analysis clearly showed that the loss-of-function Hd5 has an important role in exhibiting earlier heading among a local population in Hokkaido. Distinct distribution of the loss-of-function Hd5 revealed that this mutation event of the 19-bp deletion occurred in a local landrace Bouzu and that this mutation may have been selected as an early-heading variety in rice breeding programs in Hokkaido in the early 1900s. The loss-of-function Hd5 was then introduced into the rice variety Fanny from France and contributed to its extremely early heading under the presence of functional Ghd7. These results demonstrated that Hd5 plays roles not only in generating early heading in variations of heading date among a local population in Hokkaido, but also in extremely early heading for adaptation to northern limits of rice cultivation.     

水稻品种USSR5早熟性的遗传分析

USSR5为极早熟的前苏联品种,以抽穗期近等基因系和抽穗期QTL近等基因系为测验品种,对USSR5的抽穗期基因型进行分析,表明USSR5携带了非感光基因e1、无感光功能的Se-1e基因、感光抑制基因i-Se-1和显性早熟基因Ef-1,从而使它表现极早熟的特性。此外,本研究调查了USSR5和N22的BC1F1和F2群体的抽穗期,利用WindowsQTLCartographer1.13a软件,采用复合区间作图法,在全基因组范围内,分析了南京夏季正常日照条件下2个群体的抽穗期QTL,在USSR5/N22//USSR5BC1F1群体,共检测到2个位点,分别位于第7、8染色体上,其LOD值分别是6.11和2.91,对表型总变异的解释率分别为27.38%和11.15%,2个位点上来自USSR5的等位基因均提早抽穗。在USSR5/N22F2群体,共检测到5个位点,分别位于第1、2、7、9、10染色体上。5个位点LOD值介于3.02～8.4,对表型总变异的解释率分别为4.07%和15.41%。除qHd-9外,其余控制抽穗期的4个基因位点上提早抽穗的等位基因均来源于USSR5。比较分析发现效应较大的qHd-7即是Hd4(E1),USSR5在该位点上携带非感光基因hd4(e1)。尽管本研究定位的其它抽穗期QTL和已知抽穗期基因之间尚不能一一对应,但在早熟性水稻品种选育中,USSR5将可作为良好的基因源加以利用。