Isolation of tannin-degrading lactobacilli from humans and fermented foods

Lactobacilli with tannase activity were isolated from human feces and fermented foods. A PCR-based taxonomic assay revealed that the isolates belong to Lactobacillus plantarum, L. paraplantarum, and L. pentosus. Additional studies on a range of Lactobacillus species from established culture collections confirmed that this enzymatic activity is a phenotypic property common to these three species.     

棉秸秆降解高温菌株的筛选及产酶分析

从新疆地区分离具有降解棉秸秆纤维素功能的菌株,得到4株耐高温真菌(50°C)。纤维素酶学性质分析表明,该4株菌的纤维素酶具有良好的耐酸性(最适pH为4.5)和耐高温性(最高达60°C)。以羧甲基纤维素钠(CMC-Na)、微结晶纤维素、棉花、滤纸、淀粉、果胶为底物测定酶活力,滤纸酶活力(FPA)最高达2.63 U/mL、淀粉酶活力最高达6.17 U/mL、果胶酶活力最高达5.86 U/mL。4株真菌酶学特性分析表明,该系列菌株在秸秆生物质利用方面有很大的应用潜力。     

Isolation of thermophilic fungal strains producing oxido-reductase and hydrolase enzymes from various Tunisian biotopes

The present study surveys 37 thermophilic fungal strains, that were isolated from various Tunisian biotopes such as litter, husk and compost, for their involvement in lignin degradation activities. Oxido-reductase and hydrolase activities were screened. Oxido-reductase activities, such as Extracellular Oxidase, Laccase, Tyrosinase and Peroxidase, were tested. Hydrolase activities, namely Lipase, Protease, Amylase and Cellulase, were also revealed. Strain ST26, isolated from locally made compost, and showed an important laccase activity with ABTS and DMP, was selected. Laccase activity of strain ST26 was 1575 U/l in liquid media. This strain was identified and was belonging to Scytalidium genus and more precisely to the specie Scytalidium thermophilum using 5.8S rRNA gene sequencing analysis.     

Isolation of zoosporogenous actinomycetes from desert soils

We have undertaken a study to estimate the species diversity of zoosporogenous actinomycetes that can be isolated from an arid environment. The study site encompassed an area of approximately 22 000 square kilometers of the Mojave Desert along the California-Nevada border. A series of 29 soil samples was collected along two intersecting transects of approximately 190 and 240 km which traversed a number of distinct ecosystems. A₀ horizon soils were collected from the rhizosphere of the predominant vegetation at each sampling site and screened for the target genera using selective isolation techniques: chemoattraction (xylose and -collidine) and baiting with hair. Following incubation of primary isolation plates for 28 days at 28°C, all colonies that exhibited filamentous growth, presence of sporangia and/or motile spores upon direct microscopic observation (450 and 1000×) were further characterized by fatty acid analysis (FAME). Most of the isolates fell into three broad clusters that roughly correlated with presumptive genus assignments. Individual isolates could be assigned to 226 FAME biotypes based on chromatographic similarity (85%). The dominant species (514/826 isolates) belong to a previously undescribed taxon that morphologically resemblesGeodermatophilus but possesses unique FAME profiles that include at least three novel lipids. The remainder of the isolates were species ofActinoplanes, indeterminate species or vagrant isolates ofStreptomyces.     

Isolation of fungi from judean desert soil

Summary 1. Results of culture of thirty soil samples obtained from the Judean Desert on the western side of the Dead Sea are reported. These soil samples were obtained from caves found in the walls of the cliff leading to the plateau Massada, the level of the caves varying from sea level to 300 feet below.2. Two strains ofCryptococcus neoformans were recovered from soil obtained from a bat cave 300 feet below the top of the plateau.3. No evidence ofHistoplasma capsulatum orCoccidioides immitis was found.4. This evidence, coupled with negative skin test data reported previously, implies thatHistoplasma capsulatum andCoccidioides immitis are probably not inhabitants of soil in this part of Israel.     

两株海洋蛭弧菌的分离及生物学性质

[目的]从深圳湾海泥中分离鉴定蛭弧菌,并对其生物学性质进行初步研究.[方法]通过稀释营养肉汤(dilute nutrient broth,DNB)双层平板法分离蛭弧菌,对所分离的菌株进行电镜形态观测,并进行16S rDNA测序分析,之后结合1994年版伯杰氏鉴定细菌学手册对菌株进行鉴定,最后通过生理试验对其生物学性质进行研究.[结果]从深圳湾海泥中分离出2株蛭弧菌,分别命名为5#-12和5#-sh06,它们可在20℃～35℃范围内生长,最适温度分别是25℃和30℃;生长pH范围6.1～8.6,最适pH均为7.2;2株蛭弧菌可分别裂解46和48株试验菌,各占总试验菌株数(58)的79.3%和82.8%;联合2株蛭弧菌,可裂解56株试验菌,占总试验菌株数的96.6%;同时,它们一起能将所有试验弧菌裂解.[结论]研究结果揭示了蛭弧菌作为一种生物净化因子具有极大的潜在应用价值.     

Isolation of tannin-degrading bacteria isolated from feces of the Japanese large wood mouse, Apodemus speciosus, feeding on tannin-rich acorns

Bacteria with tannase activity were isolated from the feces of the Japanese large wood mouse, Apodemus speciosus. They were largely classified into two groups: Gram-positive cocci and Gram-positive bacilli. Genotypic analysis using a species-specific PCR assay as well as biochemical tests identified all cocci as Streptococcus gallolyticus. A PCR assay targeting a genus-specific sequence in the 16S/23S rDNA spacer region and additional 16S rDNA sequencing indicated that the bacilli belong to the genus Lactobacillus, with L. animalis and L. murinus being closely related taxa. Subsequent estimation of guanine-plus-cytosine content, amplified ribosomal DNA restriction analysis, and DNA/ DNA hybridization assay confirmed that the bacilli are homologous to each other but different from L. animalis or L. murinus. Consequently, a novel species of the genus Lactobacillus may be proposed. To date, this study is the first to report on the isolation of tannase-positive bacteria from the feces of a rodent species. These bacteria may play an essential role for the host organism in digesting tannin-rich acorns available in their natural habitats, thereby endowing them with a greater ecological advantage.     

Beta-amylases from various fungal strains. A review

An overview presentation is made on the current global status of fungal beta3-amylases, their characteristics and applications in various industries. Among the few available report on beta-amylase producing fungal strains, many showed a preference for a cultivation temperature of 28 degrees C, acidic pH and soluble starch as an inducer of enzyme synthesis. In some fungal strains, alpha-amylase and alpha-glucosidases were found to be present as major contaminating enzymes. Although the existence of a few starch digesting and raw starch adsorbing fungal strains were reported, detailed study on molecular biology of corresponding fungal genes was not available.     

Endophytic fungal community in stems and leaves of plants from desert areas in China

Endophytic fungi are known to play important ecological roles in protecting plants from various abiotic and biotic stresses. Therefore, it is valuable to investigate the endophytic fungal community associated with plants distributed in harsh environments, such as deserts. Fungal communities in the stems and leaves of ten plant samples belonging to eight species were collected from a desert area in China and tested after plant surface sterilization. The fungal compositions were different among plants. Salsola collina, Suaeda salsa, and Coriospermum declinatum possessed the highest fungal richness. The colonization rates of these samples were high, exceeding 50% in eight of the samples. However, the fungal diversity of the samples was low when measured using Shannon??s index, Fisher??s ??, and Simpson??s index. Alternaria alternata, A. franseriae, Fusarium solani, and a second Fusarium species were most frequently isolated from all samples. The diversity of isolated species was low in desert areas, although the colonization rate was relatively high. It was concluded that fungal communities associated with plants in deserts had low diversity, but a small number of species colonized various plants with a high colonization rate. The Jaccard, Sorensen, and Bray?CCurtis similarity indices for the fungal communities were low between stems and leaves. This indicated that different fungal communities colonized these two tissues. Phoma pomorum and Phoma sp. showed tissue preferences.     

Description of two anaerobic fungal strains from the bovine rumen and influence of diet on the fungal population in vivo

Neocallimastix sp. NC71 and Piromyces sp. PC12 isolated from the calf remen grew optimally at 39 degrees C and pH 6.5-6.7, utilized a wide range of mono-, oligo- and polysaccharides and exhibited CMCase, Avicelase, cellobiase, amylase and xylanase activities. The end-products of wheat straw fermentation by both strains were acetate, formate, ethanol and lactate. The number of Neocallimastix sp. zoospores in the rumen of cows in the first 3 h after feeding with hay-silage-concentrate diets varied from 7 x 10(3) to 5.4 x 10(5) ml-1; the number of uniflagellate zoospores varied from 10(4) to 10(5) ml-1. Fungal zoosporgenesis and colonization of plant substrates in the rumen were induced by feed intake and were favoured by increased levels of crude fibre in the diet.     

Isolation and characterization of serum-resistant strains ofPseudomonas aeruginosa derived from serum-sensitive parental strains

Six serum-resistant (serR) mutantPseudomonas aeruginosa strains were isolated from six serum-sensitive (serS) parental strains by subculturing the sensitive strains in increasing concentrations of normal pooled fresh human serum (FHS). Although the colonial type of the mutant was similar to that of the parental strains, each of the serR mutants had an altered serotype when compared to its parental counterpart. Three mutant strains and their corresponding parental strains were chosen for further examination. The lipopolysaccharide (LPS) preparations from the serR strains were found to be heterogeneous, containing LPS with varying degrees of O-side-chain substitution, whereas the LPS of the serS strains contained primarily lipid A-core polysaccharide components. Although two of the serR mutant strains had an outer membrane protein (OMP) profile analogous to their serS parental counterparts, one serR strain differed from its parental strain by the absence of a 32,000 dalton major OMP. These studies suggest that the susceptibility ofP. aeruginosa to the bactericidal activity of FHS may be related to either or both LPS structure or OMP content.     

Isolation and characterization of two toxins from the Mexican scorpion Centruroides limpidus limpidus Karsch

1. Several toxic polypeptides were found in the venom of the scorpion Centruroides limpidus limpidus. Comparative studies of the potency of the venom in different strains of mice were conducted. 2. A new type of toxin (component II.9), specific for crustaceans (crayfish and isopods), was isolated from this scorpion and was shown to have the following N-terminal amino acid sequence: Lys-Lys-Asp-Gly-Tyr-Leu-Val-Asn-Lys-Tyr-Thr-Gly-Cys-Lys-Val-Asn-Cys- Tyr-Lys-Leu-Gly-Glu-Asn-Lys-Phe-Cys-Asn-Arg-Glu-. 3. A polypeptide toxic to mice (component II.6) from this venom was shown to have the following N-terminal sequence: Lys-Glu-Gly-Tyr-Leu-Val-Asn-His-Ser-Thr-Gly-Cys-Lys-Tyr- Glu-Cys-Tyr-Lys-Leu-Gly-Asp-Asn-Asp-Tyr-Cys-Leu-Arg-Glu-Cys-Lys-. 4. In cultured chick dorsal root ganglion cells, 1 microM of toxin II.6 was shown to reduce the size of sodium currents and to slow-down their activation-inactivation kinetics. The toxin had also a depressive action on the classical Ca2+ current activated at high membrane potentials (greater than 0 mV).     

两株耐寒PGPB的分离及其对藏北当地牧草生长的影响

为了从青藏高原北部(简称藏北)退化草原的土壤中分离筛选可以促进当地典型牧草生长的促生菌株,以促进藏北植被修复。该文通过采用稀释涂平板的方法,分离耐低温植物促生菌株,并结合盆栽试验设计,评估分离细菌对当地牧草生长的影响。结果表明:(1)从西藏土壤中成功筛选得到两株耐低温细菌TS22和TS27,经16S rRNA基因鉴定分别属于Brevibacterium sp.和Bacillus mycoides。(2)通过离体评估两株分离菌植物促生属性的结果显示,菌株TS22和TS27均具有产生IAA、SID的能力和ACC-脱氨酶活性,TS22具有较高的ACC-脱氨酶活性(264.69 nmol·α-KB mg~(-1)·h~(-1)),TS27显示出较强的产IAA[(7.52±3.85) mg·L~(-1)]和SID(92%)的能力。(3)盆栽试验显示,在10℃低温环境下,菌株TS22和TS27对早熟禾和老芒麦生长的影响因植物和菌种的不同而有所不同;菌株TS22在株高、根长、地上和地下干重方面显著促进了早熟禾的生长,且促生能力优于TS27。该研究结果为植物-微生物技术在藏北高寒地区植被恢复中的使用提供了很好的菌种资源和实践基础。     

Isolation and characterization of nine polymorphic microsatellite loci from the desert locust,Schistocerca gregaria

Because of the scarcity of polymorphic genetic markers, only a few genetic studies on the population structure of the desert locust, Schistocerca gregaria, have been carried out. We isolated and characterized nine polymorphic dinucleotide microsatellite loci. These markers were evaluated using individuals from Niger and Senegal. Seven of these microsatellite markers are also applicable to the nongregarious subspecies Schistocerca gregaria flaviventris. Cross‐species applicability was limited to one of the loci in the sister species S. americana and in the locust Locusta migratoria.     

Growth temperature preferences of fungal strains from Victoria Land,Antarctica

Thirty-five strains of microfungi, isolated from various sites in Victoria Land, Antarctica, were grown at eight temperatures ranging from 0 to 45°C. Only 1 strain (Chaetomium sp. from hot soil) was a thermotolerant mesophile; other strains were psychrophilic (2 strains) or psychrotrophic (32 strains). The fitness of different species to thermal instability is discussed, based on the width of the growth rate curves.     

Metagenomic insights into the fungal assemblages of the northwest Himalayan cold desert

Psychrophilic fungi are a critical biotic component in cold deserts that serves a central role in nutrient recycling and biogeochemical cycles. Despite their ecological significance, culture-independent studies on psychrophilic mycobiome are limited. In the present study, the fungal diversity patterns across the Drass, an Indian cold desert in the Himalaya, were indexed by targeted amplicon pyrosequencing (ITS). In the Drass dataset, Ascomycota was represented by 92 genera, while 22 genera represented Basidiomycota. The most abundant genus was Conocybe (20.46%). Most of the identified genera were reported in the literature to be prolific extracellular hydrolytic enzyme producers. To identify whether the Drass fungal assemblages share similarities to other cold deserts, these were further compared to Antarctic and Arctic cold deserts. Comparative analysis across the three cold deserts indicated the dominance of Dikarya (Ascomycota and Basidiomycota). The observed alpha diversity, Shannon index as well as Pielou's evenness was highest in the Antarctic followed by Drass and Arctic datasets. The genera Malassezia, Preussia, Pseudogymnoascus, Cadophora, Geopora, Monodictys, Tetracladium, Titaea, Mortierella, and Cladosporium were common to all the cold deserts. Furthermore, Conocybe was represented predominantly in Drass. Interestingly, the genus Conocybe has not been previously reported from any other studies on Antarctic or Arctic biomes. To the best of our knowledge, this is the first fungal metagenome study in Drass soil. Our analysis shows that despite the similarities of low temperature among the cold deserts, a significant differential abundance of fungal communities prevails in the global cold deserts.