Is bioconvection enhancing bacterial growth in quiescent environments?

Bioconvection is an intriguing pattern-forming phenomenon driven by the swimming activity of various aquatic microorganisms. It is generally assumed that bioconvection has a positive effect on the entire microbial population by carrying oxygen into deep layers of non-aerated suspensions. In order to examine the presence of such a biological benefit, we analysed the correlation between bioconvective pattern formation and population growth of several Bacillus subtilis and Bacillus licheniformis strains under non-aerated conditions. Bioconvection is a robust phenomenon, we observed its development in numerous cultures of various strains and growth phases. Nevertheless, evaluation of the data has not revealed detectable positive effects on population growth, questioning the potential biological relevance of bioconvection in natural habitats.     

Growing degree days – Ecosystem indicator for changing diurnal temperatures and their impact on corn growth stages in Kansas

Understanding how climate change will affect plant phenology (shifts in the timing of plant activity) is central to many ecological and biogeochemical studies. This aspect of plant ecology often has been overlooked, but addressing the consequences of climate change for adaptive/mitigative management is now high on the list of priorities for funding agencies. This study is innovative because it uses growing degree days (GDD), which has existed since the 1730s, as an ecosystem indicator to study changing diurnal temperatures; their effects on different plant growth stages in the last century; and as a basis for development of future adaptive management strategies. Our results show the most recent time period (1980–2009) had the earliest emergence and the least variability among stations in the day at which the crop stage occurred for most stages except emergence and physiological maturity. 100 year linear trends in the stations indicated all seven crop stages except tassel initiation occurred earlier by one day per decade during the study period. The number of stations with significant decreases varied from 11 to 17 stations out of 23 stations in Kansas. Tassel initiation stage occurred later by one day per decade during the study period. The most recent time period (1980–2009) had the highest variability among stations and 30 year time periods. The variability in trends is higher in western Kansas when compared to eastern Kansas. This knowledge has transformative potential to improve our understanding of the occurrence and duration of the different plant growth stages, add local precision to earlier findings for changes in overall GDD that encompassed larger areas, and help explain the differences in trends from some earlier studies. These shifts in the phenology of agricultural plants as a result of climate change have implications on food production increases required to feed the growing population.     

Are the actively respiring cells (CTC+) those responsible for bacterial production in aquatic environments?

The 5-cyano-2,3-ditolyl tetrazolium chloride (CTC) staining method is commonly and increasingly used to detect and to enumerate actively respiring cells (CTC+ cells) in aquatic systems. However, this method remains controversial since some authors promote this technique while others pointed out several drawbacks of the method. Using flow cytometry (FCM), we showed that CTC staining kinetics vary greatly from one sample to another. Therefore, there is no universal staining protocol that can be applied to aquatic bacterial communities. Furthermore, using (3)H-leucine incorporation, it was shown that the CTC dye has a rapid toxic effect on bacterial cells by inhibiting protein synthesis, a key physiological function. The coupling of radioactive labelling with cell sorting by FCM suggested that CTC+ cells contribute to less than 60% of the whole bacterial activity determined at the community level. From these results, it is clearly demonstrated that the CTC method is not valid to detect active bacteria, i.e. cells responsible for bacterial production.     

Estuaries – how challenging are these constantly changing aquatic environments for associated fish species?

Environmental Biology of Fishes - Much has been written about the abundance of fishes in estuaries, and particularly the value of the littoral zone and associated macrophyte habitats as fish...     

Predator–prey interactions and changing environments: who benefits?

While aquatic environments have long been thought to be more moderate environments than their terrestrial cousins, environmental data demonstrate that for some systems this is not so. Numerous important environmental parameters can fluctuate dramatically, notably dissolved oxygen, turbidity and temperature. The roles of dissolved oxygen and turbidity on predator-prey interactions have been discussed in detail elsewhere within this issue and will be considered only briefly here. Here, we will focus primarily on the role of temperature and its potential impact upon predator-prey interactions. Two key properties are of particular note. For temperate aquatic ecosystems, all piscine and invertebrate piscivores and their prey are ectothermic. They will therefore be subject to energetic demands that are significantly affected by environmental temperature. Furthermore, the physical properties of water, particularly its high thermal conductivity, mean that thermal microenvironments will not exist so that fine-scale habitat movements will not be an option for dealing with changing water temperature in lentic environments. Unfortunately, there has been little experimental analysis of the role of temperature on such predator-prey interactions, so we will instead focus on theoretical work, indicating that potential implications associated with thermal change are unlikely to be straightforward and may present a greater threat to predators than to their prey. Specifically, we demonstrate that changes in the thermal environment can result in a net benefit to cold-adapted species through the mechanism of predator-prey interactions.     

Effect of manganese spatial distribution in the soil profile on wheat growth in rice–wheat rotation

Manganese (Mn) deficiency in wheat under rice (Oryza sativa L.) and wheat (Triticum aestivum L.) rotation is an important problem in most rice-growing areas in China. A field survey, field trials and a soil column experiment were conducted to determine the relationship between Mn leaching and distribution in soil profiles and paddy rice cultivation and the effects of Mn distribution in soil profiles on wheat growth and its response to Mn fertilization. At five field sites surveyed, total Mn and active Mn concentrations in the topsoil layers under rice–wheat rotations were only 42% and 11%, respectively, of those under systems without paddy rice. Both total and available Mn increased with soil depth in soils with rice–wheat rotations, showing significant spatial variability of Mn in the soil profile. Manganese leaching was the main pathway for Mn loss in coarse-textured soil with high pH, while excessive Mn uptake was the main pathway for Mn loss in clay-textured and acid soil. When Mn was deficient in the topsoil, sufficient Mn in the subsoil contributed to better growth and Mn nutrition of wheat but insufficient Mn in the subsoil resulted in Mn deficiency in wheat.     

Virtual issue: Alpine and subalpine plant communities: importance of plant growth,reproduction and community assemblage processes for changing environments

Natural plant communities are exposed to environmental changes such as global warming and increased human activities. It is thought that alpine and subalpine ecosystems with cool climatic conditions are sensitive to environmental changes. This virtual issue introduces multidisciplinary research at alpine and subalpine plant communities. The articles include research on (1) species diversity, vegetation and biomass, (2) species assembly, (3) climate and growth of alpine plants, (4) reproduction of alpine plants, (5) differences of growth traits among coexisting species, (6) vegetation changes by human activities and overgrazing of deer, and (7) differentiation of growth traits among ecotypes in relation to climatic conditions. These thirteen articles provide valuable information for future research on the effects of environmental changes on alpine and subalpine plant communities.     

Atlantic salmon growth in strongly food-limited environments: Effects of egg size and paternal phenotype?

I manipulated egg size and followed individual mass trajectories from the egg stage in Atlantic salmon to test for effects of size, and for interactions between size and paternal body mass, on offspring performance in strongly food-limited environments. Egg size had a strong effect on body mass at yolk absorption, causing juveniles originating from large eggs to outgrow their siblings from small eggs. This corroborates previous findings of egg size effects under more benign environments, and demonstrates that positive effects of egg size on offspring success are manifested even under strong food-limitation. Previously reported negative effects of being large during the critical period for survival in dense populations are thus likely related to social interactions, rather than to effects of density on total food abundance in the environment. The effect of egg size on offspring performance, and hence the optimal egg size, was independent of paternal body mass.     

Is there an optimal root architecture for nitrate capture in leaching environments?

Little is known about root architectural attributes that aid the capture of nitrate from coarse-textured soil profiles of high leaching potential. In this study, a range of root architectures from the herringbone to the dichotomous structure were simulated, and their capacity to take up nitrate leaching through a sandy profile was recorded. All root systems had equal total volume at each point in time, and so were considered cost equivalent. These simulations showed that the root architecture likely to maximize nitrate capture from sandy soils (under the Mediterranean rainfall pattern experienced in Western Australia) is one that quickly produces a high density of roots in the top-soil early in the season, thereby reducing total nitrate leached with opening season rains, but also has vigorous taproot growth, enabling access to deep-stored water and leached nitrate later in the season. This is the first published, spatially explicit attempt to assess the ability of different root architectures equivalent in cost, to capture nitrate from a spatially and temporally heterogeneous soil environment.     

Sex cells in changing environments: can organisms adjust the physiological function of gametes to different temperatures?

Over the past decade, hundreds of studies have examined the abilities of whole organisms to modify their physiology and behaviour in response to environmental temperature changes; despite this, virtually nothing is known about the ability of sex cells to adjust to different temperature conditions. In fact, a recent meta‐analysis based on studies of 309 species and 112 physiological and ecological traits found no studies examining the influence of temperature on gamete function. Because sex cells play a critical role in the adaptation and persistence of species, this represents a severe oversight in physiological studies of thermal adaptation. Our study examines whether sex cells can respond phenotypically to variation in the thermal environment that is experienced by the whole‐organism. Specifically, we studied the thermal dependence of sperm swimming and the critical thermal limits of sperm cells in males of the poeciliid fish, Gambusia holbrooki. This species is well known for its ability to modify physiological function and maintains burst and sustained swimming performance and mating ability across a wide range of thermal conditions. In contrast, we found that sperm cells from male G. holbrooki did not adjust their physiological function as predicted by adaptive models. After acclimation of adult males to cool or warm temperatures, we found that the critical thermal limits of sperm function remained unchanged, as did the effect of temperature on sperm swimming performance. However, warm‐acclimated fish had sperm with higher swimming speeds across all temperatures. The absence of phenotypic changes in the critical thermal limits of sperm or thermal dependence of sperm swimming performance is surprising given that whole‐organism traits in G. holbrooki generally show improved performance after exposure to novel environments. As such an inability to thermally adjust gamete function may be widespread among other organisms, we urge biologists to investigate the generality of this result.     

Does hut climate matter for piglet survival in organic production?

Piglet mortality in outdoor production systems varies across the year, and a reason for this variation could be fluctuations in hut climate, as ambient temperature might influence piglet survival, both directly and indirectly. Therefore, the aim of the current study was to investigate the impact of farrowing hut climate and year variation on stillbirth and liveborn mortality. A large-scale observational study was conducted at five commercial organic pig-producing herds in Denmark from June 2015 to August 2016. Both year variation (F_3,635=4.40, P=0.004) and farrowing hut temperature (F_2,511=6.46, P=0.002) affected the rate of stillbirths. The risk of stillborn piglets was lowest in winter and during this season larger changes in hut temperature between day 1 prepartum and the day of farrowing increased the risk of stillbirths (F_1,99=6.39, P=0.013). In addition, during the warm part of the year stillbirth rate increased at temperatures ⩾27°C. Year variation also affected liveborn mortality (F_3,561=3.86, P=0.009) with a lower rate of liveborn deaths in spring. However, the hut climate did not influence liveborn deaths. Consequently, other factors than hut climate may explain the influence of year variation on liveborn mortality. These could be light differences causing seasonality in reproduction and lactation.     

Can spelt wheat be used as heterotic group for hybrid wheat breeding?

Key message

Spelt wheat is a distinct genetic group to elite bread wheat, but heterosis for yield and protein quality is too low for spelt to be recommended as heterotic group for hybrid breeding in wheat.

Abstract

The feasibility to switch from line to hybrid breeding is currently a hot topic in the wheat community. One limitation seems to be the lack of divergent heterotic groups within wheat adapted to a certain region. Spelt wheat is a hexaploid wheat that can easily be crossed with bread wheat and that forms a divergent genetic group when compared to elite bread wheat. The aim of this study was to investigate the potential of Central European spelt as a heterotic group for Central European bread wheat. We performed two large experimental field studies comprising in total 43 spelt lines, 14 wheat lines, and 273 wheat–spelt hybrids, and determined yield, heading time, plant height, resistance against yellow rust, leaf rust, and powdery mildew, as well as protein content and sedimentation volume. Heterosis of yield was found to be lower than that of hybrids made between elite wheat lines. Moreover, heterosis of the quality trait sedimentation volume was negative. Consequently, spelt wheat does not appear suited to be used as heterotic group in hybrid wheat breeding. Nevertheless, high combining abilities of a few spelt lines with elite bread wheat lines make them interesting resources for pre-breeding in bread wheat. Thereby, the low correlation between line per se performance and combining ability of these spelt lines shows the potential to unravel the breeding value of genetic resources by crossing them to an elite tester.

     

Forest biodiversity in a changing climate: which logic for conservation strategies?

Climate change has direct and indirect impacts on forest ecosystems worldwide. In this context, changing site conditions and altered disturbance regimes as well as forest management responses are challenging the conservation of biodiversity in forests. Climate-induced dynamics and uncertainties related to future forest ecosystem development are calling into question current conservation strategies and concepts. Given the longevity of trees, slow development rates of forest ecosystems and slow migration rates of many forest species, the planning of adaptation measures in response to climate change are especially difficult though highly important for forest biodiversity conservation. This paper introduces a special issue with eight contributions which deal with a variety of aspects of forest biodiversity conservation in the face of climate change. More specifically, the papers address direct impacts of climate change on forest biodiversity, adaptation measures for forest and conservation management, as well as resulting challenges for conservation strategies and concepts. In conclusion, adaptation measures that enhance diversity and provide different options for future action, thereby maintaining ecosystems’ resilience, as well as conservation management operating on a landscape level, are promoted as being beneficial for coping with uncertainties related to climate change. Adaptive management, which constantly reviews conservation goals and measures, and which takes into account both science-based and local ecological knowledge on climate change can be a valuable tool to inform decisions for forest biodiversity conservation.     

Beryllium in the environment: Whether fatal for plant growth?

Beryllium could be a threatening heavy metal pollutant in the agro-ecosystem that may severely affect the performance of crops. Beryllium is used in various industries to make nuclear weapons and reactors, aircraft and space vehicle structures, instruments, and X-ray machines, and its entry into the environment is alarming for the productivity and sustainability of the ecosystem. In this review, we present a contemporary synthesis of the existing data regarding the toxic effects of beryllium on toxicity on biochemical and physiological processes in plants. Moreover, uptake, translocation, and assimilation of beryllium and its interaction with some essential mineral elements are also discussed. Although limited data are available regarding biochemical responses of plants to beryllium toxicity, we tried to clarify some basic physiological and biochemical steps that can be hampered by beryllium in plants. We linked our hypothetical concepts with previous evidence and provide a comprehensive summary of all possible remediation strategies that can be used for plants. Overall, we hope this review will be beneficial due to its practical implications and research directions.     

Do grains whisper for help? Evidence for herbivore‐induced synomones in wheat grains

Thus far, the release of herbivore‐induced synomones (HIS) has almost exclusively been demonstrated in somatic plant tissue. Here we present evidence for the production of HIS from reproductive tissue, i.e., seeds. The study system consisted of wheat grains (Triticum aestivum L., Poaceae) infested by larvae of the granary weevil Sitophilus granarius L. (Coleoptera, Curculionidae), which in turn are attacked by the parasitic wasp Lariophagus distinguendus Förster (Hymenoptera, Pteromalidae). The use of potential chemical signals from the infested grain for host recognition of L. distinguendus was studied with weevil‐infested grains that had developed under a range of humidity conditions. Wasps always performed longer antennal drumming on infested than healthy grains, demonstrating that they were able to recognize infested grains under all humidity conditions. In grains developed at a high humidity (75% r.h.), host recognition is enabled by chemical signals arising from the host faeces which densely cover infested grains. However, in grains from a low humidity (45% r.h.) almost no faeces are present, indicating that other cues are used by the wasp. Control experiments revealed that these other cues are neither chemical signals from faeces contaminations, volatiles from faeces nor host larvae inside the grain, movement of host larvae, or moisture content of infested grains. Therefore, wasp recognition of infested grains in low humidity conditions is probably based on chemical signals from the grain itself that are induced by the feeding of granary weevil larva. Further experiments revealed that infested grains increase their viability when granary weevil larvae are killed by the idiobiont L. distinguendus. This justifies the categorisation of potential signals from the grain as HIS. To our knowledge, this is the only system where potential HIS in plant seeds have been studied. We discuss whether potential HIS are actively produced by infested grains or are a by‐product of grain metabolism.     

Selective growth of a mutant in continuous culture of Bacillus caldolyticus for production of α-amylase

Summary In a continuous culture of Bacillus caldolyticus strain SP, which requires maltose as an inducer for production of -amylase in batch culture, a predominant mutant strain M1 which produced high amounts of -amylase in the absence of maltose in batch culture, developed. The change of cell population from strain SP to strain M1 in maltose-casitone medium was linear with time in the transient state after the change from batch to continuous culture at a dilution rate of 0.17 h^-1, and was completed in about 11 generations of bacterial growth. The dilution rate effect of continuous culture on -amylase activity was almost the same with both strains SP and M1. The maximum -amylase activity of 380 units/ml was observed at an intermediate dilution rate that was 11.5 times higher than -amylase activity at the end of a batch culture using the same medium. It was deduced that the enhancement of -amylase production in continuous culture was attributed partly to the predominant growth of a mutant strain with higher -amylase productivity.     

A sequential response to growth substances in coleoptiles from γ-irradiated wheat

Summary -irradiated wheat seed (500 kr) produces coleoptiles that grow without cell division or DNA synthesis. Apart from an initial 24-hr delay in growth, intact coleoptiles have a pattern of cell elongation similar to normal coleoptiles. The elongation of coleoptiles excised at a size of 2 mm, when the cells are small and just prior to entering a rapid elongation phase, is promoted by kinetin and gibberellic acid (GA₃). Elongation of coleoptiles excised at 8 mm, when the cells are larger and in the rapid elongation phase, is promoted by indoleacetic acid (IAA). This sequential response to growth substances in coleoptiles is remarkably similar to that in normal coleoptiles. The GA₃ response in excised coleoptiles is not inhibited by FUDR, confirming that DNA synthesis is not required for GA₃-induced elongation in coleoptiles.