Homing and Daytime Tidal Movements of Juvenile Snappers (Lutjanidae) between Shallow-Water Nursery Habitats in Zanzibar, Western Indian Ocean

We studied daily tidal movements of tagged juvenile Lutjanus fulviflamma and Lutjanus ehrenbergii between two adjacent habitats, a subtidal channel and shallow tidal notches in the fossil reef terrace, in a shallow marine bay on Zanzibar Island (Tanzania). Due to a large tidal range, the notches were dry at low-tide and were only accessible to the snappers at high-tide. Of the resighted individuals, 48% showed clear movement between the two habitats, orientated in a direction perpendicular to the tidal currents. Individuals resighted more than once showed site fidelity, indicating homing in both the channel and the notches. We suggest that a significant part of this population of juvenile snappers may move from a low-tide resting habitat to a high-tide resting habitat during the daytime, perhaps to avoid predation by larger predators that may enter the channel at high-tide.     

泉州湾蟳埔潮间带大型底栖动物群落的时空分布

为了比较泉州湾蟳埔潮间带沙滩、互花米草滩和牡蛎石泥滩3种生境(3个潮层)的大型底栖动物群落,2011年4月至2012年1月对3种生境的大型底栖动物进行了季度定量取样。在3种生境共获得85种大型底栖动物,其中环节动物39种,软体动物20种,节肢动物21种,刺胞动物、扁形动物、纽虫动物、星虫动物和脊索动物各1种。多维标度排序(MDS)分析表明,春季和冬季泉州湾蟳埔潮间带3种生境的大型底栖动物群落相似性较低;夏季和秋季互花米草滩与牡蛎石泥滩的大型底栖动物群落相似性较高,而与沙滩的大型底栖动物群落相似性较低。沙滩大型底栖动物群落的季节变化较明显,其次是牡蛎石泥滩,而互花米草滩大型底栖动物群落的季节变化较不明显。大型底栖动物栖息密度和生物量随着潮层降低而增加。单变量双因素方差分析(Two-way ANOVA)表明,不同生境之间的大型底栖动物物种数、栖息密度、多样性指数、均匀度指数和丰度指数有显著差异,但生物量无显著差异,这是因为沙滩的物种数较少,栖息密度较低,但优势种弧边招潮蟹(Uca arcuata)个体较大,互花米草滩和牡蛎石泥滩的优势种为加州中蚓虫(Mediomastus californiensis),个体相对弧边招潮蟹小。不同季节之间大型底栖动物物种数、栖息密度、生物量和丰度指数有显著差异,但多样性指数和均匀度指数元显著差异,这是因为沙滩物种数少,但个体分布比较均匀,而互花米草滩和牡蛎石泥滩物种数较多,个体分布较不均匀。以上结果表明,潮汐、沉积物粒径和生境是影响潮间带大型底栖动物群落的主要因素。潮汐导致潮间带的空间异质性,空间异质性导致大型底栖动物群落的差异。     

Do systematic daily counts reflect the total number of birds using stopover sites during migration? A test with Eurasian Spoonbill

Many migratory waterbird populations are declining and wetland connectivity is a major conservation challenge. The importance of stopover sites has been typically assessed by peak counts of birds, which underestimate the total number of individuals using the site over a migratory season, especially in small wetlands. We analysed the accuracy of different daily count schemes to estimate the total number of Eurasian Spoonbill that stop over at two tidal wetlands during their autumn migration and compared them with the birds observed leaving the area each day. Total number of birds was obtained by combining numbers of each flock of birds leaving during the season. We obtained different accurate predictors for birds departing daily from each stopover area. Daily low-tide counts were the best predictor of the daily number of birds that stopover in a tidal wetland mainly used to refuel (staging site), whereas daily high-tide counts were best at a wetland mainly used to rest (stopover site). Each measure also accurately predicted annual trends for each area, respectively. Daily low-tide counts could be used as an easy census method to estimate the daily number of individuals using a staging site consistently during the entire migratory season, as well as indicating trends, without the necessity of estimating turnover rates. By contrast, daily high-tide counts would be especially suitable for determining the minimum relevance and the population trends of other tidal wetlands (especially the smaller ones), which regularly support moderate numbers of spoonbills during migration where birds use to stop over for less than one day. This method developed for the spoonbill, a flagship and umbrella species, could represent a first step in improving the conservation of other endangered migratory waterbird populations.     

Temporal Dynamics of South End Tidal Creek (Sapelo Island, Georgia) Bacterial Communities

Bacterial community dynamics in South End tidal creek, Sapelo Island, GA, were studied over a 74-h, five-tidal-cycle period. Observations were made hourly for the first consecutive 24 hours, every 3 hours on the second day, and every 6 hours on the third day. Tide most strongly influenced bacterial community composition (high-tide versus low-tide community analysis of similarities, R = 0.41, P < 0.03). Dissolved oxygen concentration and conductivity were important proximate drivers. However, after accounting for tide and environmental variables colinear with tide, cumulative time became more important in describing community variation. In-stream physical processes, including particulate suspension and sedimentation, may explain tide-associated trends in the bacterial community composition observed.     

浙江马鞍列岛海域潮间带底栖海藻分布特征

2007年3—7月对浙江马鞍列岛海域潮间带底栖海藻进行了调查,初步查明该海域潮间带底栖海藻的组成、分布情况和温度属性,并利用相似性指数（S_c）和相对重要性指数（IRI_c）分析了调查海域潮间带底栖海藻的优势种组成.结果表明：调查海域采集到的31种海藻隶属于3门24属,其中绿藻门5属7种,褐藻门5属8种,红藻门14属16种;在波浪和潮汐作用下,潮间带出现局限分布种和选择性分布种,孔石莼、鼠尾藻等在调查岛礁区域广有分布;红藻门种类在调查海域的出现频率为61.1%,为优势门类,绿藻门种类在该海域的总体水平分布基本呈均匀状态;81%的调查种类分布在低潮带,其中包括一些中潮带延伸种类,中、低潮带的海藻组成相似性值为0.47,并且中、低潮带的生境趋同效果大于高、中潮带.马鞍列岛潮间带底栖海藻具有明显的垂直分带现象,温水性种类占绝对优势,优势种多为暖温性种.该海域底栖海藻属于暖温带-亚热带过渡型海洋植物区系.     

Mangrove inundation and nutrient dynamics from a GIS perspective

A digital elevation model describing topography, tide elevation and inundation degree and frequency of a mangrove forest in North Brazil is discussed in relation to existing phosphate and physicochemical data in waters of an adjacent tidal creek. Due to smooth topography, an increase of 20 cm in tidal height above average neap tides increases flooded area from about 50 to 80%. Analysis of the relationship between microtopography, tidal height and flooding rate showed that in the upper 60 cm of the mangrove forest, increases of 20 cm in topographical height resulted in a doubling of the inundation frequency. This can be particularly relevant for the analysis of nutrient mobilization and vegetation structure of infrequently inundated wetlands. Throughout the year, low-tide phosphate in creek water was inversely proportional to the maximum area flooded during high tide, this correlation being higher during the dry season. Similarly, the inverse relationship between flooded areas and low-tide/high-tide pH ratios was highly significant during the dry season and the beginning of the rainy season. Although the high correlations obtained are based on data pairs obtained at high and low tide, it has to clarified whether the association between inundation degree and creek water pH is relevant for the stability of P compounds in sediment on the short scale of a tidal cycle.     

Characterization of Microbial Mats from a Siliciclastic Tidal Flat (Bahía Blanca Estuary,Argentina)

Biofilms and microbial mats cover the tidal flats of the central zone of the Bahía Blanca estuary (Argentina), creating extensive layers. The objective of this study was to characterize the microphytobenthic communities in these biofilms and mats from sediment cores taken in March, June, September and December 2010. Microorganisms were identified and enumerated by microscopy, and their biomass (chlorophyll a, biovolume) quantified at two different stations in the lower supratidal zone, located ～210 m apart from each other (namely S1 and S2). Additionally, the colloidal carbohydrates produced by these microbial communities were quantified, together with physical parameters such as temperature, granulometry, moisture and organic matter content of the sediment layers that comprise a typical epibenthic mat. On the other hand, changes in biomass and colloidal carbohydrate content were studied through a half-tidal cycle (7 h). There were significant seasonal differences in microphytobenthic biovolume (P < 0.001) with a considerably lower biomass in summer, but no significant differences in microalgal biovolume between stations (P = 0.454). Cyanobacterial biomass (largely composed of the filamentous Microcoleus chthonoplastes) was dominant on all dates at both stations, followed by pennate diatoms. Chlorophyll a and colloidal carbohydrate contents in sediment presented a similar pattern to that of microalgal biovolume; with a 5-fold variation in chlorophyll a for S1 between consecutive sampling events on September and December. There were significant differences between sampling dates in colloidal carbohydrates (P < 0.001) with the lowest values recorded during fall and winter; conversely there were no significant differences between stations (P = 0.324). Silt was the dominant sediment fraction at S1 while sand dominated throughout the uppermost 20 mm at S2. Chlorophyll a contents did not show significant differences throughout a half-tidal cycle, likely the product of vertical migration along the section sampled. Conversely, the content of colloidal carbohydrates varied 5-fold, showing a significant (P < 0.001) and steady increase with time of exposure to air and pointing to the rapid metabolic rates of the community. In conclusion, the microphytobenthic community of the Bahía Blanca estuary presented marked seasonality in its biological parameters and overall physiognomy, also showing elevated metabolic rates when subject to tidal fluctuations.     

Structural variations of phytoplankton in the coastal seas of Yucatan,Mexico

A study was done of the relationship between hydrographic variables and the composition, abundance, community structure and biomass spectrums of coastal phytoplankton at scales greater than 100 km on the Yucatan Peninsula (SE Gulf of Mexico). This was done during the season of greatest environmental instability in the region, the northwind season (late fall to winter). Samples were collected at stations in the west (Campeche), north (Yucatan), and east (Quintana Roo) zones of the Peninsula. Measurements were taken of temperature, salinity, dissolved oxygen, dissolved inorganic nutrients (ammonia, nitrite, nitrate and phosphate) and chlorophyll a, and samples were taken for phytoplankton analysis. The hydrographic results showed the Campeche zone as having the lowest salinity (<35 psu) values, as well as the highest inorganic nutrient and chlorophyll a values, all of which are related to continental water contributions. The Yucatan zone had the lowest temperatures and the lowest inorganic nutrient values, indicating influence from the Yucatan Current and the Gulf of Mexico. A total of 159 phytoplankton species were identified, dominated by diatoms (>80%) and dinoflagellates. Phytoplankton exhibited greater concentration, richness, equitability and diversity in Campeche, while the lowest community structure values were had in the Quintana Roo zone. The ordination analysis demonstrated that the dominant genera were the diatoms Chaetoceros, Pseudonitzschia and Thalassionema. The biomass spectrums exhibited the lowest slope in environments of higher heterogeneity, with Campeche being the most disturbed and heterogeneous zone and Quintana Roo that with the least heterogeneity.     

Entrainment of the activity rhythm of the mole crab Emerita talpoida

The mole crab Emerita talpoida migrates with the tide in the swash zone of sand beaches. A circatidal rhythm in vertical swimming underlies movement, in which mature male crabs show peak swimming activity 1-2 h after the time of high tides at the collection site. In addition, there is a secondary rhythm in activity amplitude, in which crabs are maximally active following low amplitude high tides and minimally active following high amplitude high tides. The present study determined the phase response relationship for entrainment of the circatidal rhythm with mechanical agitation and whether the cycle in activity related to tidal amplitude could be entrained by a cycle in the duration of mechanical agitation at the times of consecutive high tides. After entrainment with mechanical agitation on an orbital shaker, activity of individual crabs was monitored in constant conditions with a video system and quantified as the number of ascents from the sand each 0.5 h. Mechanical agitation at the times of high tide, mid-ebb and low tide reset the timing of the circatidal rhythm according to the timing relationship to high tide. However, mechanical agitation during flood tide had no entrainment effect. In addition, a cycle in duration of mechanical agitation entrained the rhythm in activity amplitude associated with tidal amplitude. Both rhythms and entrainment effectiveness over the tidal cycle may function to reduce the likelihood of stranding above the swash zone.     

Effects of low temperature on the burrowing rates of four sandy beach molluscs

Burrowing rates have been measured as a function of size and temperature in four molluscs from warm temperate South African sandy beaches: two bivalves of the genus Donax and two whelks of the genus Bullia. Animals were acclimated to a summer temperature of 21 °C and then subjected to drastic temperature drops, aimed at simulating coastal temperatures recorded during local upwelling. Burrowing times increased from 6–16 s at 20 °C to 18-∞ s at 10 °C, the lowest temperature recorded during summer upwelling. The degree of retardation of burrowing that occurred at low temperature was inversely proportional to the height of penetration into the intertidal zone by the different species. Large animals burrowed more slowly than small animals but were less affected by lowered temperature. Comparison of burrowing rates at 10 °C against swash frequencies recorded under upwelling conditions suggests that under extreme conditions of upwelling, burrowing in three species may not be rapid enough to prevent some individuals being swept up the beach by the swash. The most dangerous time in this respect is at the high tide during choppy sea conditions.     

Population Densities of Nematodes Under Seven Tillage Regimes

Numbers of plant-parasitic nematodes on corn growing under seven tillage regimes were monitored. Differences among treatments occurred for Helicotylenchus pseudorobustus, Pratylenchus spp., Xiphinema americanum, dorylaimids, and total numbers of nematodes. Except with members of the Tylenchinae, highest densities occurred in no-till ridge plots and lowest numbers occurred in spring- and fall-plowed pots.     

Coarse root spatial distribution determined using a ground-penetrating radar technique in a subtropical evergreen broad-leaved forest, China

Coarse roots play a critical role in forest ecosystems and both abiotic and biotic factors affect their spatial distribution. To some extent, coarse root density may reflect the quantity of root biomass and biotic competition in forests. However, using traditional methods (e.g., excavation) to study coarse roots is challenging, because those methods are time-consuming and laborious. Furthermore, these destructive methods cannot be repeated in the same forests. Therefore, the discovery of non-destructive methods for root studies will be very significant. In this study, we used a ground-penetrating radar technique to detect the coarse root density of three habitats (ridge, slope and valley) and the dominant tree species (Castanopsis eyrei and Schima superba) in a subtropical forest. We found that (i) the mean of coarse root density for these three habitats was 88.04 roots m^?2, with roots being mainly distributed at depths of 0–40 cm. Coarse root densities were lower in deeper soils and in areas far from the trunk. (ii) Coarse root densities differed significantly among the three habitats studied here with slope habitat having the lowest coarse root density. Compared with S. superba, C. eyrei had more roots distributed in deeper soils. Furthermore, coarse roots with a diameter >3 cm occurred more frequently in the valleys, compared with root densities in ridge and slope habitats, and most coarse roots occurred at soil depths of 20–40 cm. (iii) The coarse root density correlated negatively with tree species richness at soil depths of 40–60 cm. The abundances of the dominant species, such as C. eyrei, Cyclobalanopsis glauca, Pinus massoniana, had significant impacts on coarse root density. (iv) The soil depth of 0–40 cm was the “basic distribution layer” for coarse roots since the majority of coarse roots were found in this soil layer with an average root density of 84.18 roots m^?2, which had no significant linear relationships with topography, tree species richness, rarefied tree species richness and tree density. Significant relationships between coarse root density and these factors were found at the soil depth of 40–60 cm, which was the “potential distribution layer” for coarse root distribution.     

Distribution of Different Species of the Bacteroides fragilis Group in Individuals with Japanese Cedar Pollinosis

We investigated associations of species of the Bacteroides fragilis group with Japanese cedar pollinosis (JCPsis). Cell numbers of Bacteroides fragilis and Bacteroides intestinalis were significantly higher in JCPsis subjects than in non-JCPsis subjects before the pollen season. They correlated positively with both symptom scores and JCPsis-specific immunoglobulin E levels.     

Crustaceans as ecological indicators of metropolitan sandy beaches health

We have investigated how indices of beach health perform in predicting the abundances of the crustaceans Emerita brasiliensis and Atlantorchestoidea brasiliensis from 22 metropolitan beaches in the cities of Rio de Janeiro and Niterói. Urbanization, Recreation and Conservation indices were used to assess sandy beaches health. Grain size and beach slope were used as morphodynamics indicators. Diagram from the principal component analysis clearly separated beaches with different urbanization and conservation levels. Generalized additive models (GAM's) were adjusted for species abundance using the indices and morphodynamic parameters as explanatory variables. Lower abundances were predicted for beaches with high levels of urbanization, whereas predictions of higher abundances occurred on beaches with high conservation levels. Using theoretic inference we showed that the urbanization index was the most important predictor for abundance of A. brasiliensis and the conservation index was the most important predictor for E. brasiliensis, reflecting different responses by upper tidal and intertidal species. A. brasiliensis occupies the intermediate and upper beach zones and E. brasiliensis is a swash zone filter-feeder that is more abundant in pristine beaches. Both species are highly subject to the impact of bathers and coastal modification. Unexpected, the recreation index did not show a negative effect on abundance predictions. Urbanization and conservation indices can be suitable metrics to measure anthropogenic effects on macrobenthic species. Moreover, mole crabs and sandhoppers species can be easily monitored. Coastal urbanization is a global phenomenon and we used the diagram of urbanization and conservation levels to expose possible directions for management strategies of metropolitan sandy beaches.     

Effects of oil/gas field produced water on the macrobenthic community in a small gradient estuary

Little is known about how climatic events (i.e., drought) inhibit or enhance movement of petroleum hydrocarbon laden sediments in estuarine systems and how this in turn effects the macrobenthic populations exposed to these sediments. Seventeen collection stations were established and monitored at New Bayou, Texas, a small gradient estuary which receives petroleum products via oil/gas field produced water discharge. Hydrographic, geologic and biotic samples were taken monthly from each station during a period of reduced rainfall. Both temperature and dissolved oxygen data taken during the study followed patterns typical for the area. Salinity values increased into the polyhaline range at near-bay stations during the reduced rain period, while upper bayou stations remained within the oligohaline range. Sediment grain sizes along the bayou were generally in the silty-clay range. Sediment hydrocarbon concentrations were highest (11.4 mg g⁻¹ dry sediment) around the produced water discharge site and lowest at near-bay stations (0.2 mg g⁻¹ dry sediment). Ninety-six macrobenthic species were collected during the study. General effects from produced water discharge on macrobenthic populations followed the classical pattern outlined by other research in shallow bay systems. A sediment hydrocarbon concentration of 2.5 mg g⁻¹ dry sediment was found to reflect the average value needed to depress population abundances. Both abundance and diversity values were lowest at central stations near the discharge site. This zone of depressed macrobenthic populations extended from the discharge site at least 107 m downstream and 46 m upstream. The zone of stimulated macrobenthic populations occurred 1486 m downstream and 381 m upstream from the discharge site.     

水土流失治理措施对小流域土壤有机碳和全氮的影响

明确综合治理条件下小流域土壤有机碳(Soil organic carbon,SOC)和全氮(Total nitrogen,TN)的空间分布特征及其影响因素,对科学评价水土流失区土壤固碳潜力具有重要意义。以黄土高原丘陵沟壑区典型小流域(砖窑沟流域)为对象,基于流域内3种典型地貌类型(梁峁坡、沟坡、沟谷)和3种典型水土流失治理措施(水平梯田、林地和草地措施,坡耕地为对照),采集土壤样品737个,研究地貌类型和水土流失治理措施对小流域SOC和TN变化的影响。结果表明,同一地貌类型上,水平梯田、林地和草地措施的SOC和TN(0—10 cm土层)含量均显著高于坡耕地(P<0.1)。梁峁坡上,水平梯田、林地和草地措施条件下的SOC和TN含量较坡耕地依次提高了18%和24%、70%和59%、25%和21%;沟坡上,林地和草地措施的SOC和TN较坡耕地依次提高了76%和54%、25%和27%。同一治理措施在不同地貌类型间对0—10 cm土层SOC和TN的影响存在显著差异(P<0.1)。水平梯田条件下,沟谷的SOC和TN含量比峁坡提高了46%和43%;林地措施条件下,沟坡的SOC和TN含量比峁坡提高了18%和6%;草地措施条件下,沟坡的SOC和TN含量比峁坡提高了14%和18%。0—100 cm土层的SOC或TN在不同地貌类型或不同治理措施间的差异与土壤水分含量(Soil moisture,SM)的变化趋势基本一致,并且SOC或TN与SM呈指数关系y=aebx(y为SOC或TN,x为SM)。     

Formation of cardinal process in Ordovician strophomenids

The cardinalia of strophomenids Lynnica fragilis gen. et sp. nov. and Sowerbyella (Sowerbyella) liliifera Öpik, 1930 from the Ordovician of the Leningrad Region are described in detail for different developmental stages. The study has revealed that the cardinal process of S. liliifera is bilobed unifid and the cardinal process of L. fragilis is bilobed trifid. L. fragilis gen. et sp. nov. is described.     

Evaluation of new gyrB-based real-time PCR system for the detection of B. fragilis as an indicator of human-specific fecal contamination

A rapid and specific gyrB-based real-time PCR system has been developed for detecting Bacteroides fragilis as a human-specific marker of fecal contamination. Its specificity and sensitivity was evaluated by comparison with other 16S rRNA gene-based primers using closely related Bacteroides and Prevotella. Many studies have used 16S rRNA gene-based method targeting Bacteroides because this genus is relatively abundant in human feces and is useful for microbial source tracking. However, 16S rRNA gene-based primers are evolutionarily too conserved among taxa to discriminate between human-specific species of Bacteroides and other closely related genera, such as Prevotella. Recently, one of the housekeeping genes, gyrB, has been used as an alternative target in multilocus sequence analysis (MLSA) to provide greater phylogenetic resolution. In this study, a new B. fragilis-specific primer set (Bf904F/Bf958R) was designed by alignments of 322 gyrB genes and was compared with the performance of the 16S rRNA gene-based primers in the presence of B. fragilis, Bacteroides ovatus and Prevotella melaninogenica. Amplicons were sequenced and a phylogenetic tree was constructed to confirm the specificity of the primers to B. fragilis. The gyrB-based primers successfully discriminated B. fragilis from B. ovatus and P. melaninogenica. Real-time PCR results showed that the gyrB primer set had a comparable sensitivity in the detection of B. fragilis when compared with the 16S rRNA primer set. The host-specificity of our gyrB-based primer set was validated with human, pig, cow, and dog fecal samples. The gyrB primer system had superior human-specificity. The gyrB-based system can rapidly detect human-specific fecal source and can be used for improved source tracking of human contamination.     

Variations of Mn,Fe and S concentrations in sediment pore waters of Ria Formosa at different time scales

Intertidal sediments of Ria Formosa have been surveyed at different time scales. Pore water of short sediment cores was collected bimonthly at five stations, from May 1993 to June 1994, around low-tide. One location was studied intensively every 1.5 hour, during a 6-hour air-exposure period, and during 20 minutes (1, 5, 10 and 20 minutes) immediately after tidal water had inundated the sampling site. Determinations of vertical profiles of pH, Eh, water content, O₂, total dissolved Mn (Mn_diss), total dissolved Fe (Fe_diss) and inorganic sulphur [(HS^–)_t] were carried out in all samples. The results obtained indicate that daily variations of Mn_diss, Fe_diss and (HS^–)_t concentrations appear to be superimposed to the seasonal ones. Probably, the renewal of the pore water at periods of tidal inundation causes advective transport of manganese and exchange of iron, between the pore water and the solid fraction of the sediment that masks seasonal fluctuations induced by temperature and organic matter input variations.