水稻minE基因的克隆及分析

 植物叶绿体与原核生物分裂机制相似,其中MinE蛋白在细菌分裂过程中具有重要作用. 为了研究植物MinE蛋白在叶绿体分裂过程中的功能及其进化,利用RT PCR技术克隆了水稻叶绿体分裂相关基因OsMinE,并在GenBank登录（No. AY496951）.OsMinE基因cDNA全长1 035 bp,其ORF为711 bp,编码236个氨基酸.与原核生物MinE蛋白相比,水稻OsMinE具有明显延伸的N端与C端.其N端102个氨基酸残基为预测的叶绿体导肽序列,C端延伸保守,推测赋予植物MinE蛋白新的功能.植物minE基因结构分析显示,水稻、拟南芥、杨树都仅含有1个内含子,且插入位置及相位相同.这表明,该内含子可能在单子叶、双子叶植物分化前产生.水稻OsMinE基因在大肠杆菌细胞中的表达严重影响了细胞的分裂,初步证明了水稻MinE蛋白与原核细胞MinE蛋白功能类似.水稻OsMinE基因的克隆为进一步研究叶绿体的分裂机制奠定了基础.     

梅花草属叶绿体基因组进化分析

叶绿体基因组序列变异和基因组成等特征可有效反映植物类群间的系统发育和进化关系。本研究利用Illumina高通量测序平台对梅花草属（Parnassia）及其近缘属5种植物的叶绿体基因组进行测序和组装,同时基于已发表的近缘种叶绿体基因组信息,对梅花草属叶绿体基因组结构特征、序列遗传变异和蛋白编码基因密码子偏好性比对分析。结果显示：梅花草属叶绿体基因组整体结构较为保守,均为四分体结构;梅花草多个基因出现假基因化,而本属其他物种叶绿体基因组成一致,均编码115个基因;与近缘属物种相比,本属所有物种均丢失rpl16基因的内含子;蛋白质编码基因的非同义/同义替代率比值较低,叶绿体基因可能经历纯化选择作用;密码子偏好性聚类结果与蛋白编码序列重建的系统发育关系结果一致。本研究表明选择压力可能在梅花草属叶绿体基因组蛋白编码基因进化过程中发挥作用,有助于进一步理解梅花草属植物的进化和适应机制。     

衣藻叶绿体分裂相关基因CrFtsZ3的克隆及其原核表达

FtsZ蛋白在原核细胞以及植物细胞叶绿体的分裂过程中发挥着重要作用。为了研究叶绿体分裂装置的进化 ,运用RT PCR方法从莱茵衣藻中克隆了叶绿体分裂相关基因CrFtsZ3。由于已经从衣藻细胞中克隆了一个ftsZ基因 ,所以CrFtsZ3的克隆表明衣藻中已经存在两类不同的 ftsZ基因 ,这说明 ftsZ基因的复制与分歧发生于绿藻的分化之前。序列分析结果显示 ,CrFtsZ3所编码的蛋白质具有FtsZ蛋白的典型模体。进一步的原核表达与定位分析表明CrFtsZ3 GFP融合蛋白沿着宿主菌体的纵轴方向有规律地聚集成荧光点或荧光带 ,并且CrFtsZ3蛋白过量表达明显干挠了宿主菌正常的细胞分裂过程 ,说明衣藻CrFtsZ3蛋白能够识别宿主细胞内的分裂位点并影响细胞分裂过程 ,从而初步验证了它的生物学功能     

植物早期光诱导蛋白基因研究进展

植物早期光诱导蛋白（ELIP）是核编码的叶绿体蛋白,它属于叶绿素结合蛋白超家族的成员。皿伊基因是一古老的基因,在原核细胞中即已存在。真核生物细胞核中的皿,尸基因最初可能来源于其质体基因组。目前,已从30多种不同植物中克隆到该基因,研究发现它们多属于胁迫诱导基因,其功能可能涉及光保护作用。本文介绍了20多年来皿,尸基因的克隆、生物发生、表达调控和功能方面的研究进展,以期为今后的进一步研究奠定基础。     

Bt基因甜菜叶绿体转化载体构建及毒蛋白表达

利用植物叶绿体基因组在进化中高度保守的特点,根据烟草、菠菜、水稻叶绿体基因组全序列资料设计合成引物,PCR扩增并克隆了甜菜叶绿体两个重要功能基因rbcL和atpB(GenBank登录号分别为DQ067450和DQ067451),并以其作为定点整合外源基因的同源重组片段,构建了Bt基因CryIAc甜菜叶绿体定点转化载体pSKARBt,酶切鉴定表明:所构建载体符合预期设计。对克隆菌菌体总蛋白进行了生物杀虫试验,结果表明:Bt基因CryIAc能够在叶绿体特异性启动子及终止子的调控下表达,并对二龄末甘蓝夜蛾有很强的毒杀作用。该载体构建对培育甜菜高抗虫品种具有重要应用价值。叶绿体转化及后续工作正在进行中。     

水稻（Oryza sativa L.）核基因组存在叶绿体psbA基因的同源 …

序列比较说明、重复ＤＮＡ顺序ｐＲＲＤ９＾＊与水稻叶绿体基因组中编码ＱＢ蛋白的ｐｓｂＡ基因存在高度的同源。用ｐＲＢＤ９亚克隆片段ｐＲＲＤ９Ｒ和片段ｐＲＲＤ９Ｌ对水稻的叶绿体和核ＤＮＡ进行Ｓｏｕｔｈｅｒｎ杂交分析,揭示了ｐｓｂＡ基因同源片段在某个进化时期由叶绿体基因组转移到水稻核基因组,而且两者在水稻进化过程中的变异程度存在明显的差异。     

叶绿体基因组:起源、结构与表达调控

叶绿体具有独立基因组。被认为是内共生起源的细胞器。叶绿体基因组是多拷贝的,具有比较保守的环状结构,但也存在着一些例外。叶绿体基因组主要用于编码与光合作用密切相关的一些蛋白和一些核糖体蛋白。由核基因编码的叶绿体蛋白质在胞质中先形成分子量较大的前体蛋白,而后跨过叶绿体膜,使叶绿体完成生理功能。叶绿体基因表达调控是在不同水平上进行的,光和细胞分裂素对叶绿体基因的表达也起着重要的调节作用。     

甘薯叶绿体表达载体构建及其融合基因在叶绿体中的瞬间表达

利用叶绿体基因组进化中高度保守的特点,根据烟草叶绿体基因组全序列设计引物,从甘薯(Ipomoea batatas)叶绿体基因组中克隆了2个相邻的功能基因rbcL(GenBank登录号为AY942199)和accD(GenBank登录号为AY942200),并以此作为定点整合外源基因的同源重组片段.以来自叶绿体基因组的强启动子Prrn和RpsbA-pro分别驱动选择标记基因aadA及phaC-gfp融合基因,构建成表达盒prrn-aadA-TpsbA-ter与RpsbA-pro-phaC-gfp-RpsbA-ter,然后将这2个表达盒串联在一起克隆进甘薯叶绿体同源片段中,获得甘薯叶绿体定点整合表达载体pSC-GFP.酶切分析证明,所构建的载体符合预期设计;采用该载体对甘薯叶片进行基因枪转化,结果显示,phaC-gfp融合基因可在叶绿体特异启动子和终止子的调控下在甘薯幼嫩叶片中瞬间表达,证明构建的载体pSC-GFP可用于甘薯叶绿体转化.     

拟南芥未知功能基因At4g22890编码蛋白的叶绿体定位

蛋白质的亚细胞定位信息对于深入了解该蛋白质的功能具有重要意义。本文对一个预测的拟南芥叶绿体未知功能基因At4g22890编码蛋白进行了叶绿体定位研究。我们克隆了该基因5′端长208bp的DNA片段,与绿色荧光蛋白(GFP)基因构建重组表达载体pMON530-cTP-GFP,经农杆菌介导转化拟南芥。转基因植株经激光共聚焦显微镜观察,GFP荧光仅在叶绿体中观察到,表明所克隆的DNA序列编码的多肽能够将At4g22890编码蛋白质引导进入叶绿体,由此推测该蛋白质为叶绿体蛋白质。     

拟南芥未知功能基因At4g22890 编码蛋白的叶绿体定位

蛋白质的亚细胞定位信息对于深入了解该蛋白质的功能具有重要意义。本文对一个预测的拟南芥叶绿体未知功能基因At4g22890 编码蛋白进行了叶绿体定位研究。我们克隆了该基因5′端长208 bp 的DNA 片段, 与绿色荧光蛋白(GFP) 基因构建重组表达载体pMON530-cTP-GFP, 经农杆菌介导转化拟南芥。转基因植株经激光共聚焦显微镜观察, GFP 荧光仅在叶绿体中观察到, 表明所克隆的DNA 序列编码的多肽能够将At4g22890 编码蛋白质引导进入叶绿体, 由此推测该蛋白质为叶绿体蛋白质。     

A Chloroplast Protein Homologous to the Eubacterial Topological Specificity Factor MinE Plays a Role in Chloroplast Division

We report the identification of a nucleus-encoded minE gene, designated AtMinE1, of Arabidopsis. The encoded AtMinE1 protein possesses both N- and C-terminal extensions, relative to the eubacterial and algal chloroplast-encoded MinE proteins. The N-terminal extension functioned as a chloroplast-targeting transit peptide, as revealed by a transient expression assay using an N terminus:green fluorescent protein fusion. Histochemical beta-glucuronidase staining of transgenic Arabidopsis lines harboring an AtMinE1 promoter::uidA reporter fusion unveiled specific activation of the promoter in green tissues, especially at the shoot apex, which suggests a requirement for cell division-associated AtMinE1 expression for proplastid division in green tissues. In addition, we generated transgenic plants overexpressing a full-length AtMinE1 cDNA and examined the subcellular structures of those plants. Giant heteromorphic chloroplasts were observed in transgenic plants, with a reduced number per cell, whereas mitochondrial morphology remained similar to that of wild-type plants. Taken together, these observations suggest that MinE is the third conserved component involved in chloroplast division.     

The sequences of MinE responsible for its subcellular localization analyzed by competitive binding method in <Emphasis Type="Italic">Escherichia coli</Emphasis>

The subcellular localization of a protein is important for its proper function. Escherichia coli MinE is a small protein with clear subcellular localization, which provides a good model to study protein localization mechanism. In the present study, a series of recombinant minEs truncated in one end or in the middle regions, fused with egfp, was constructed, and these recombinant proteins could compete to function with the chromosomal MinE. Our results showed that the sequences related to the subcellular localization of MinE span several functional domains, demonstrating that MinE positioning in cells depends on multiple factors. The eGFP fusions with some truncated MinE from N-terminal resulted in different cell phenotypes and localization features, implying that these fusions can interfere chromosomal MinE’s function, similar to MinE^36–88 phenotype in the previous report. The amino acid in the region (32–48) is sensitive to change MinE conformation and influence its dimerization. Some truncated protein structure could be unstable. Thus, the MinE localization is prerequisite for its proper anti-MinCD function and some new features of MinE were demonstrated. This approach can be extended for subcellular localization research for other essential proteins.     

Division site placement in E.coli: mutations that prevent formation of the MinE ring lead to loss of the normal midcell arrest of growth of polar MinD membrane domains

The MinE protein functions as a topological specificity factor in determining the site of septal placement in Escherichia coli. MinE assembles into a membrane-associated ring structure near midcell and directs the localization of MinD and MinC into a membrane- associated polar zone that undergoes a characteristic pole-to-pole oscillation cycle. Single (green fluorescent protein) and double label (yellow fluorescent protein/cyan fluorescent protein) fluorescence labeling experiments showed that mutational alteration of a site on the alpha-face of MinE led to a failure to assemble the MinE ring, associated with loss of the ability to support a normal pattern of division site placement. The absence of the MinE ring did not prevent the assembly and disassembly of the MinD polar zone. Mutant cells lacking the MinE ring were characterized by the growth of MinD polar zones past their normal arrest point near midcell. The results suggested that the MinE ring acts as a stop-growth mechanism to prevent the MinCD polar zone from extending beyond the midcell division site.     

Deletion analysis of gene minE which encodes the topological specificity factor of cell division in Escherichia coli

Division inhibition caused by the minCD gene products of Escherichia coli is suppressed specifically at mid-cell by MinE protein expressed at physiological levels. Excess MinE allows division to take place also at the poles, leading to a minicell-forming (Min⁻) phenotype. In order to investigate the basis of this topological specificity, we have analysed the ability of truncated derivatives of MinE to suppress either minCD -dependent division inhibition in a chromosomal Δ( minB ) background, or the division inhibition exerted by MinCD at the cell poles in a minB,+ strain. Our results indicate that these two effects are not mediated by identical interactions of MinE protein. In addition, gel filtration and the yeast two-hybrid system indicated that MinE interacts with itself by means of its central segment. Taken together, our results favour a model in which wild-type MinE dimer molecules direct the division inhibitor molecules to the cell poles, thus preventing polar divisions and allowing non-polar sites to divide. This model explains how excess MinE, or an excess of certain MinE derivatives which prevent the accumulation of the division inhibitor at the poles, can confer a Min⁻ phenotype in a minB ⁺ strain.     

高等植物质体的分裂

质体来源于早期具光合能力的原核生物与原始真核生物的内共生事件。原核起源的蛋白以及真核寄主起源的蛋白共同参与了质体的分裂过程。以原核生物的细胞分裂蛋白为蓝本, 近些年在植物中陆续鉴定出几种主要的原核生物细胞分裂蛋白的同源物, 如FtsZ、MinD和MinE蛋白。然而, 除此之外, 原核细胞大多数分裂相关因子在植物中找不到其同源物, 但却鉴定了许多真核寄主来源的分裂相关蛋白。当前研究的重点是剖析各种质体分裂蛋白协同作用的机制, 业已证明MinD和MinE的协同作用保证了FtsZ(Z)环的正确定位。尽管经典的FtsZ的抑制因子MinC在植物中不存在, 但实验表明ARC3在拟南芥中具有类似MinC的功能。ARC3蛋白与真核起源的蛋白如ARC5、ARTEMIS、FZL和PD环以及其它原核起源的蛋白如ARC6和GC1等共同构成了一个复杂的植物质体分裂调控系统。     

高等植物质体的分裂

质体来源于早期具光合能力的原核生物与原始真核生物的内共生事件。原核起源的蛋白以及真核寄主起源的蛋白共同参与了质体的分裂过程。以原核生物的细胞分裂蛋白为蓝本,近些年在植物中陆续鉴定出几种主要的原核生物细胞分裂蛋白的同源物,如FtsZ、MinD和MinE蛋白。然而,除此之外,原核细胞大多数分裂相关因子在植物中找不到其同源物,但却鉴定了许多真核寄主来源的分裂相关蛋白。当前研究的重点是剖析各种质体分裂蛋白协同作用的机制,业已证明MinD和Mine的协同作用保证了FtsZ（Z）环的正确定位。尽管经典的FtsZ的抑制因子MinC在植物中不存在,但实验表明ARC3在拟南芥中具有类似MinC的功能。ARC3蛋白与真核起源的蛋白如ARC5、ARTEMIS、FZL和PD环以及其它原核起源的蛋白如ARC6和GC1等共同构成了一个复杂的植物质体分裂调控系统。     

Overexpression of MinE gene affects the plastid division in cassava

The MinE protein plays an important role in plastid division. In this study, the MinE gene was isolated from the cassava (Manihot esculenta Crantz) genome. We isolated high quality and quantity protoplasts and succeed in performing the transient expression of the GFP-fused Manihot esculenta MinE (MeMinE) protein in cassava mesophyll protoplasts. The transient expression of MeMinE-GFP in cassava protoplasts showed that the MeMinE protein was located in the chloroplast. Due to the abnormal division of chloroplasts, overexpression of MeMinE proteins in cassava mesophyll protoplasts could result in fewer and smaller chloroplasts. Overexpression of MeMinE proteins also showed abnormal cell division characteristics and minicell occurrence in Escherichia coli caused by aberrant septation events in the cell poles.     

Dynamic localization cycle of the cell division regulator MinE in Escherichia coli

The MinC protein directs placement of the division septum to the middle of Escherichia coli cells by blocking assembly of the division apparatus at other sites. MinD and MinE regulate MinC activity by modulating its cellular location in a unique fashion. MinD recruits MinC to the membrane, and MinE induces MinC/MinD to oscillate rapidly between the membrane of opposite cell halves. Using fixed cells, we previously found that a MinE-green fluorescent protein fusion accumulated in an annular structure at or near the midcell, as well as along the membrane on only one side of the ring. Here we show that in living cells, MinE undergoes a rapid localization cycle that appears coupled to MinD oscillation. The results show that MinE is not a fixed marker for septal ring assembly. Rather, they support a model in which MinE stimulates the removal of MinD from the membrane in a wave-like fashion. These waves run from a midcell position towards the poles in an alternating sequence such that the time-averaged concentration of division inhibitor is lowest at midcell.     

Role of MinD-membrane association in Min protein interactions

Division site placement in Escherichia coli involves interactions of the MinD protein with MinC and MinE and with other MinD molecules to form membrane-associated polymeric structures. In this work, as part of a study of these interactions, we established that heterologous membrane-associated proteins such as MinD can be targeted to the yeast nuclear membrane, dependent only on the presence of a membrane-binding domain and a nuclear targeting sequence. Targeting to the nuclear membrane was equally effective using the intrinsic MinD membrane-targeting domain or the completely unrelated membrane-targeting domain of cytochrome b(5). The chimeric proteins differing in their membrane-targeting sequences were then used to establish the roles of membrane association and specificity of the membrane anchor in MinD interactions, using the yeast two-hybrid system. The chimeric proteins were also used to show that the membrane association of MinD and MinE in E. coli cells had no specificity for the membrane anchor, whereas formation of MinDE polar zones and MinE rings required the presence of the native MinD membrane-targeting sequence.