Kinetic parameters of lactate dehydrogenases of some rumen bacterial species,the anaerobic ciliate Isotricha prostoma and mixed rumen microorganisms

A number of kinetic parameters of the lactate dehydrogenases of three rumen bacterial species (Peptostreptococcus productus, Propionibacterium acnes and Actinomyces viscosus), the rumen ciliate Isotricha prostoma and mixed rumen microorganisms (MRM) with respect to NADH, pyruvate, fructose-1,6-diphosphate (FDP) as well as the effects of several nucleotide phosphates were studied.Partially purified LDH of Peptostr. productus had the same kinetic parameters as in crude cell free extracts. Values for K_m, determined by Michaelis-Menten kinetics with pyruvate as the substrate, were in the same range for all lactate dehydrogenases. After feeding a cow, changes in the apparent K_m and V_max values for NADH of the total LDH activity in MRM were followed.It is suggested that of the factors studied the ratio NADH/NAD(H) and ATP are the most important regulatory factors for the lactate dehydrogenases of mixed rumen microorganisms.The investigation were supported by the Foundation for Fundamental Biological Research (BION), which is subsidized by the Netherlands Organization for the Advancement of Pure Research (ZWO)     

Inter-species comparison of 7-hydroxycoumarin glucuronidation and sulfation in liver S9 fractions

Summary UDP glycosyltransferases (UGTs) and sulfotransferases (SULTs) are phase II enzymes that interact with a number of xenobiotics in humans and animals. Species differences in enzymatic characteristics have seldom been investigated. Liver S9 fractions are commonly used for studying phase II metabolism in vitro. The objective of this study was to characterize the UGT and SULT activities in liver S9 fractions from various species including humans, monkeys, dogs, and rats. A single substrate, 7-hydroxycoumarin (7-HC), at several concentrations was incubated at 37° C with the S9 reaction matrices along with necessary cofactors. The rate of formation of two metabolites, 7-HC-glucuronide (7-HC-G) and 7-K_m and V_mas values were calculated for each species. For the UGTs, the apparent K_m and V_max for 7-HC-G formation varied greatly among different species, with dog UGTs having both the highest K_m and V_max values. In contrast to UGTs, the K_m for 7-HC-S formation showed no significant difference among humans, monkeys, and rats (approximately 3 μM). However, the K_m in dog was 8.7 μM. Species differences with respect to phase II metabolism must be carefully considered when selecting an in vitro model system to study various aspects of drug metabolism.     

PURIFICATION AND PROPERTIES OF CHOLINE ACETYLTRANSFERASE FROM THE NERVOUS SYSTEM OF DIFFERENT INVERTEBRATES

—Choline acetyltransferase has been purified from three invertebrate species, namely snail (Helix aspersa), cockroach (Periplaneta americana) and horse shoe crab (Limulus polyphemus.) All three enzymes followed a Theorell-Chance enzyme mechanism with a sequential addition of the substrates. All three enzymes were activated by sodium and potassium chloride and inhibited by high concentrations of magnesium or calcium chloride. The apparent K_m for choline and acetyl-CoA was for snail: K_mch= 370 μm ,K_mAcetyl-CoA= 51μm ; cockroach:K_mCh= 550 μm , K_mAcely-CoA= 16 μm horse shoe crab:K_mCn= 2700 μm K_mAcctyl-coA= 68 μm CoA inhibited the enzymes competitively with respect to acetyl-CoA and non-competitively with respect to choline. Acetylcholine inhibited the enzymes competitively with respect to choline and non-competitively with respect to acetyl-CoA. All the enzymes were inhibited strongly by 5,5′-dithiobis (2-nitrobenzoate), iodoacetate, acryloylcholine, chloracetylcholine and 3-bromacetonyltrimethyl-ammonium. The enzymes were only weakly inhibited by the styrylpyridine derivatives. The isoelectric points were 5.3 and 5.0 for the horse shoe crab and cockroach enzymes respectively. All three enzymes showed low affinity for a cation-exchanger (CM-Sephadex).     

Inhibition of Spinach Leaf NADPH(NADH)-Glyoxylate Reductase by Acetohydroxamate, Aminooxyacetate, and Glycidate

Acetohydroxamate (AHA) and aminooxyacetate (AOA) were found to be potent inhibitors of purified NADPH(NADH)-dependent glyoxylate reductase from spinach (Spinacia oleracea) leaves. AHA was a noncompetitive (ro mixed) inhibitor of the NADPH-dependent activity of the reductase with a K_i of 0.33 millimolar. With NADH serving as a cofactor, AHA preferentially bound to the same form of the enzyme as glyoxylate, exhibiting a K_i of 0.31 millimolar. Glycine hydroxamate and l-glutamic acid-γ-hydroxamate were also inhibitory, but to a lesser extent than AHA. Inhibition by AOA (K_i of 1.8 millimolar) was enhanced by increased concentrations of glyoxylate, indicating that the inhibitor preferentially reacted with the glyoxylate-bound form of the enzyme. Glycidate, an effector of glycolate metabolism in leaves, was found to be a much weaker inhibitor of the enzyme with a K_i of 21 millimolar. While the inhibition by both AHA and AOA was fully reversible, glycidate acted as a tight-binding inhibitor. These findings are discussed with respect to the use of AHA, AOA, and glycidate as inhibitors of photorespiratory carbon metabolism in leaves. Caution is recommended in the use of these inhibitors with intact tissue experiments due to their lack of specificity.     

Purine nucleotide synthesis in lymphoblasts cultured from normal subjects and a patient with Lesch-Nyhan syndrome

Human lymphoblasts derived from normal and hypoxanthine-guanine phosphoribosyltransferase (HGPRT) deficient individuals have been maintained in permanent tissue culture, and comparative studies of their purine metabolism have been undertaken. In agreement with previous observations in fibroblasts, the HGPRT-deficient lymphoblasts (less than 2% normal HGPRT activity) demonstrate threefold increases in the production of purines by the de novo pathway and four- to eightfold increases in intracellular concentrations of 5-phosphoribosyl 1-pyrophosphate (PRPP). The activities of the enzymes of purine metabolism responsible for production and utilization of PRPP were measured under optimal conditions in each cell line. The activities of adenine phosphoribosyltransferase (APRT), PRPP synthetase, and PRPP amidotransferase were independent of cell density and were not significantly different in the two cell lines. The K _m values of the common substrate, PRPP, were determined in normal lymphoblast extracts for APRT (K _m of 0.033 mM), HGPRT (K _m of 0.074 mM), and PRPP amidotransferase (K _m of 0.3 m M). The relatively low affinity of PRPP amidotransferase for PRPP suggests that deficiency of the HGPRT enzyme with its attendant increase in PRPP concentration should be accompanied by increased in vivo activity of PRPP amidotransferase, the first and presumed rate-limiting enzyme of de novo purine biosynthesis.This work was supported in part by National Institutes of Health Grants AM-05646, AM-13622, and GM-17702.     

Purification and kinetic properties of ATP: citrate oxaloacetate lyase from rat brain.

Abstract— A method for a partial purification of ATP:citrate oxaloacetate lyase from rat brain is described. The Lineweaver–Burk plots of velocity vs citrate concentration are biphasic in the presence of fixed concentrations of MgCl₂. Therefore two values of K_m, corresponding to low and high concentrations of citrate, can be determined. When MgCl₂ is added in equimolar concentrations with citrate, a monophasic plot with one K_m of 0.13 mm is obtained. The K_m value for MgATP^2- was independent of citrate concentration, being equal to 0.40–0.43 mm. The K_m for CoA was 0.0007 mm. ADP and P_i are competitive inhibitors with respect to ATP. K_i for MgADP⁻ is equal to 0.13 mm. dl -isocitrate and cis-aconitate are partially competitive inhibitors with respect to citrate with K_i values of 5.8 and 4.8 mm, respectively. α-Ketoglutarate and pyruvate are noncompetitive inhibitors with respect to ATP and citrate, with K_i values equal to 9 and 45 mm, respectively. The physiological significance of these effectors for the regulation of citrate lyase activity in brain is discussed.     

UV-B Radiation Mediated Alterations in the Nitrate Assimilation Pathway of Crop Plants 1. Kinetic Characteristics of Nitrate Reductase

The kinetics and other characteristics of nitrate reductase (NR, EC 1.6.6.1) in cowpea [Vigna unguiculata (L.) Walp.] seedlings irradiated with biologically effective UV-B radiation (280-320 nm, 3.2 W m^-2 s^-1) were recorded. The in vivo and in vitro NR activities were inhibited by 34 and 41 % under UV-B treatment, respectively. Both V_max and K_m for the substrate were enhanced by UV-B radiation. The K_m for nitrate increased from 1.2 to 1.7 mM after the UV-B irradiation. The change in K_m for NADH was from 0.12 to 0.17 mM. The increases in K_m indicate that UV-B radiation seriously changes the topology of NR, particularly with respect to the nitrate and NADH binding sites. The rate of NR turnover indicates the extent of damage inflicted by UV-B radiation on the nitrate metabolism. The half-life (t_1/2) of NR was reduced from 7 to 4 h in the UV-B treated seedlings. UV-B also inhibited the kinetics of nitrate uptake by plants: its K_m increased from 0.08 to 0.12 mM. This revised version was published online in June 2006 with corrections to the Cover Date.     

Physicochemical Study of Calcium-binding Properties of Chemical Substances as Inhibitors against Calcium Phosphate Insolubilization

Calcium-binding properties of some chemical substances known as inhibitors against calcium phosphate insolubilization were investigated using a calcium-ion-selective electrode. First, the calcium binding properties of citrate, a well-known inhibitor, were evaluated by both the formation constant K_f and two parameters N and K in the Langmuir equation. It was confirmed that the parameters N and K were superior to the formation constant K_f to describe the calcium-binding property. Second, the calcium-binding properties of several inhibitors such as poly-L-aspartate, poly-L-glutamate, and alginates were analyzed by the Langmuir equation. They were well-described by the Langmuir equation. The tested inhibitors were classified into two groups: inhibitors of which parameters were independent of their concentrations (Group 1) and those whose parameters were dependent on their concentrations (Group 2). The values of the affinity parameter K for the Group 1 inhibitors were larger than those for the Group 2 inhibitors.     

Mitochondrial bioenergetics linked to the manifestation of programmed cell death during somatic embryogenesis of <Emphasis Type="Italic">Abies alba</Emphasis>

The present work reports changes in bioenergetic parameters and mitochondrial activities during the manifestation of two events of programmed cell death (PCD), linked to Abies alba somatic embryogenesis. PCD, evidenced by in situ nuclear DNA fragmentation (TUNEL assay), DNA laddering and cytochrome c release, was decreased in maturing embryogenic tissue with respect to the proliferation stage. In addition, the major cellular energetic metabolites (ATP, NAD(P)H and glucose-6-phosphate) were highered during maturation. The main mitochondrial activities changed during two developmental stages. Mitochondria, isolated from maturing, with respect to proliferating cell masses, showed an increased activity of the alternative oxidase, external NADH dehydrogenase and fatty-acid mediated uncoupling. Conversely, a significant decrease of the mitochondrial K_ATP⁺ channel activity was observed. These results suggest a correlation between mitochondrial activities and the manifestation of PCD during the development of somatic embryos. In particular, it is suggested that the K_ATP⁺ channel activity could induce an entry of K⁺ into the matrix, followed by swelling and a release of cytochrome c during proliferation, whereas the alternative pathways, acting as anti-apoptotic factors, may partially counteract PCD events occurring during maturation of somatic embryos.     

Flow kinetics of L-asparaginase attached to nylon tubing

L -Asparaginase has been attached by chemical means to the inner surface of nylon tubing. An experimental study has been carried out of the flow kinetics for such a system, asparagine solutions at various concentrations being passed through two lengths of tubing at various flow rates. Measurements were made of the concentration of the product ammonia at the tube exit, and of the rate of formation of ammonia, under the various conditions. Apparent Michaelis constants, K_m(app), were some three orders of magnitude higher than the K_m for the enzyme in free solution (～13 × 10^?6JM). The results were analyzed with respect to the theoretical treatment described in the preceding paper (Kobayashi and Laidler), three different methods being employed. It is concluded that at lower substrate concentrations and flow rates the reactions are largely diffusion-controlled, the enhanced K_m(app) values being largely if not entirely due to the diffusion control; ionic strength studies showed electrostatic repulsion effects to be unimportant. At high concentrations and high flow rates (when the diffusion layer is of negligible thickness) the diffusional effects are minimized, and K_m(app) approaches the true K_m value for the immobilized enzyme.     

Characterisation of the PTEN inhibitor VO-OHpic

PTEN (phosphatase and tensin homologue deleted on chromosome 10) is a phosphatidylinositol triphosphate 3-phosphatase that counteracts phosphoinositide 3-kinases and has subsequently been implied as a valuable drug target for diabetes and cancer. Recently, we demonstrated that VO-OHpic is an extremely potent inhibitor of PTEN with nanomolar affinity in vitro and in vivo. Given the importance of this inhibitor for future drug design and development, its mode of action needed to be elucidated. It was discovered that inhibition of recombinant PTEN by VO-OHpic is fully reversible. Both K _m and V _max are affected by VO-OHpic, demonstrating a noncompetitive inhibition of PTEN. The inhibition constants K _ic and K _iu were determined to be 27 ± 6 and 45 ± 11 nM, respectively. Using the artificial phosphatase substrate 3-O-methylfluorescein phosphate (OMFP) or the physiological substrate phosphatidylinositol 3,4,5-triphosphate (PIP₃) comparable parameters were obtained suggesting that OMFP is a suitable substrate for PTEN inhibition studies and PTEN drug screening.     

Identification of morin and other compounds as inhibitors of the malic enzyme of Mucor circinelloides in vitro but not in vivo

Of 13 compounds tested, 11 inhibited malic enzyme activity in Mucor circinelloides, to some degree, at 5 mM. Four of these inhibitors (tartronic acid, morin, catechin and 2,5-dihydroxybenzoic acid) were studied further. Tartronic acid, morin and catechin were competitive inhibitors of malic enzyme (with respect to malate), with apparent K_i values of 0.04 mM, 5 μM and 0.6 mM, respectively. 2,5-Dihydroxybenzoic acid was a non-competitive inhibitor, with respect to malate, and had an apparent K_i value of 0.8 mM. Morin and tartronic acid did not inhibit any other NADPH-generating enzyme studied, although both inhibited malate dehydrogenase. The inhibitory actions of catechin and 2,5-dihydroxybenzoic acid were less specific. All four compounds inhibited malic enzyme, to some extent, when included in the culture medium. This inhibition was not as great as in vitro however and was insufficient to have an effect on lipid metabolism in M. circinelloides. This revised version was published online in July 2006 with corrections to the Cover Date.     

Purification and characterization of laccase-1 fromPleurotus florida

Pleurotus florida (ITCC 3308) produces two laccase enzymes (L₁ and L₂) in potato-dextrose media containing 0.5% yeast extract. Concentrated culture filtrate was separated on DEAE-Sephadex (A-50) column into two enzyme peaks, subsequently named L₁ and L₂. The L₁ enzyme has been purified to homogeneity by ion-exchange and gel-permeation chromatography. L₁ is a monomeric glycoprotein with a molar mass of 77 and 82 kDa as determined by SDS-PAGE and gelfiltration chromatography, respectively. The pI value of L₁ has been determined to be 4.1. The optimum reaction temperature of the enzyme is 50°C. TheK _m and some other kinetic parameters of L₁ have been determined. Cyanide and azide completely inhibit the enzyme activity. The enzyme was fully active in 1: 1 (V/V) buffer-chloroform for at least 2 h. Spectroscopic analysis revealed that the enzyme has four copper atoms, a type 1 copper, a type 2 copper and a type 3 binuclear copper.     

A tale of two plasticities: leaf hydraulic conductances and related traits diverge for two tropical epiphytes from contrasting light environments

We compared the effects of different light environments on leaf hydraulic conductance (K_leaf) for two congeneric epiphytes, the tank bromeliads Guzmania lingulata (L.) Mez and Guzmania monostachia (L.) Rusby ex Mez. They occur sympatrically at the study site, although G. monostachia is both wider ranging and typically found in higher light. We collected plants from two levels of irradiance and measured K_leaf as well as related morphological and anatomical traits. Leaf xylem conductance (K_xy) was estimated from tracheid dimensions, and leaf conductance outside the xylem (K_ox) was derived from a leaky cable model. For G. monostachia, but not for G. lingulata, K_leaf and K_xy were significantly higher in high light conditions. Under both light conditions, K_xy and K_ox were co‐limiting for the two species, and all conductances were in the low range for angiosperms. With respect to hydraulic conductances and a number of related anatomical traits, G. monostachia exhibited greater plasticity than did G. lingulata, which responded to high light chiefly by reducing leaf size. The positive plasticity of leaf hydraulic traits in varying light environments in G. monostachia contrasted with negative plasticity in leaf size for G. lingulata, suggesting that G. monostachia may be better able to respond to forest conditions that are likely to be warmer and more disturbed in the future.     

Discrimination between rival laccase inhibition models from data sets with one inhibitor concentration using a penalized likelihood analysis and Akaike weights

Laccase from the white-rot fungus Fomes fomentarius was used for the biodegradation of ferulic acid (FA) in the presence of chloride anions. The initial reaction rates of substrate depletion were obtained by reverse-phase HPLC determination of remaining FA since substrate and reaction products have absorption peaks at similar wavelengths. Modelling of time-course data was accomplished by discrimination of the best enzyme inhibition equation from an initial set of seven different models based on Michaelis–Menten kinetics: competitive; uncompetitive; non-competitive; mixed; mixed hyperbolic; mixed parabolic; mixed hyperbolic and parabolic. Corrected Akaike information criterion was used to evaluate the relative merit of each kinetic model in order to rank them and find the more likely one. The discrimination results showed that the models with higher probabilities were the competitive and mixed inhibition types, but Akaike weights supported the selection of competitive inhibition (CI). After optimization by nonlinear regression, laccase kinetic parameters of FA biodegradation in the presence of chloride anions were: V_max?=?0.11?μmol?min^?1?mg^?1, K_m?=?44?μmol?L^?1 and a CI constant K_ic?=?14?mmol?L^?1.     

Multiple regulatory sites in the C-terminal autoinhibitory domain of the plasma membrane H+-ATPase

The H⁺-ATPase activities of root and leaf plasma membranes from tobacco (Nicotiana tabacum) have been characterized with respect to V_max, K_m for ATP, pH dependence and activation involving the C-terminal autoinhibitory domain. With root plasma membranes, addition of lysophosphatidylcholine (lyso-PC) resulted in the expected increase in V_max, a decrease in K_m(ATP), and a shift in pH optimum to a more alkaline pH, typical for activation via the C-terminal inhibitory domain. With leaf plasma membranes, however, K_m(ATP) was relatively low and the pH optimum was around pH 7.0 before the addition of lyso-PC and did not change upon addition of the activator, although V_max increased twofold. Similar results were obtained with the in vivo activator fusicoccin. The results obtained with the leaf plasma membranes show that V_max may be regulated independently of K_m(ATP) and pH optimum, and suggest the presence of at least two regulatory sites within the C-terminal autoinhibitory domain of the H⁺-ATPase.     

On the inhibition of camel retina acetylcholinesterase activity by cycloheximide in vitro

The kinetic parameters of inhibition of camel retinal acetylcholinesterase (AChE) activity by cycloheximide (CH) were investigated. For the control system, the Michaelis–Menten constant (K _m)for the hydrolysis of acetylthiocholine iodide was found to be 0.076 mmol/L and the V _max was 0.547 mol/min per mg protein. In contrast, these parameters were decreased in the CH-treated systems. Dixon and Lineweaver–Burk plots, and their secondary replots, indicated that the inhibition was of the linear mixed type, which seems to be a combination of partial competitive and pure noncompetitive inhibition. The values of K_i(slope) and K _I(intercept) were estimated to be 3.50 and 5.68 mmol/L, respectively. K _i was greater than K_i, indicating that CH has a greater binding affinity for the peripheral site than the active site.     

Effects of In Vitro Hypoxia and Lowered pH on Potassium Fluxes and Energy Metabolism in Rat Brain Synaptosomes

Synaptosomes isolated on isosmotic Ficoll density gradients are an effective model for some aspects of neuronal function. They maintain metabolic energy levels ([ATP]/[ADP] [Pi1) and transplasma membrane electrical potentials very similar to those of neurons in the intact brain. The concentration of K⁺ in the external medium (K⁺-sensitive electrode), O₂ uptake, and cytochrome c reduction (550 nm minus 540 nm) were simultaneously monitored in synaptosomal suspensions. Oxidative metabolism is the primary source of intrasynaptosomal ATP and at pH 7.4 anaerobiosis results in K⁺ leakage at 4.5 ± 0.8 nmol/min/mg protein with glucose as substrate and 10.7 T 1.9 nmol/min/mg protein with lactate plus pyruvate (10:1) as substrate. Reintroduction of oxygen initiates complete (ouabain-sensitive) reuptake of K. at initial rates of 35.4 ± 3.2 nmol/min/mg protein and 18 ± 1.7 nmol K^-/min/mg protein, respectively. The rates of K⁺ leakage and reuptake fall when the pH is lowered from 7.4 to 6.0 but recover fully if the pH is raised to the original value. The rates of K¹ release and uptake decrease when the Na^- concentration in the medium is decreased and increase when the Ca^2- concentration is decreased. The intrasynaptosomal [K⁺] under aerobic conditions was 77.3 ± 3 MM and the calculated K⁺ diffusion potential was -72 mV. Anaerobic incubation of the synaptosomes for up to 20 min and at pH values from 7.4 to 6.0 did not produce irreversible impairment of any of the measured variables. These results suggest that permanent loss of brain function following prolonged hypoxia and ischemia is not due to irreversible damage to the synapses with respect to these parameters but rather to impairment of some other neuronal functions.     

Shortcomings in USEPA's Approach for Predicting Risk Due to Consumption of Animal Food Products Impacted by Air Emissions from Hazardous Waste Combustion Facilities: A Case Study Involving Phthalates

As a part of the permitting process for hazardous waste combustion facilities, regulatory agencies are now conducting site-specific, multipathway risk assessments. In accordance with the approach established by the USEPA, the Texas Natural Resource Conservation Commission uses a prospective risk assessment paradigm whereby site-specific activity pattern and land use information is used to determine plausible exposure scenarios and pathways. A set of exposure scenarios defined as receptors (i.e., resident adult, resident child, farmer adult, farmer child, fisher adult and fisher child) is then assumed to be exposed via multiple applicable exposure pathways. In conducting such risk assessments, modeled air emissions of di-n-octyl phthalate (DNOP), at concentrations near or below detectable levels, have been observed to produce an unacceptable hazard in the farmer exposure scenario. Sensitivity analyses indicated that two key parameters affected hazard estimates for DNOP in the farmer scenario: the octanol-water partition coefficient (K_ow), which is used to predict bioaccumulation in animal tissue, and the metabolism factor, which is used to account for metabolism and elimination. Evidence indicates that K_ow values for highly lipophillie compounds are accurately determined using a slow-stir method. In addition, evidence indicates that the phthalates of interest are extensively metabolized and eliminated. However, current USEPA guidance includes geometric mean K_ow values for highly lipophillie compounds derived in part on methods that are outdated and no longer considered accurate. In addition, USEPA guidance only considers metabolism for bis-% ethylhexyl phthalate (BEHP). Collectively, these two shortcomings in the USEPA approach result in a 38-fold underestimation of hazard for BEHP and a 172,000-fold overestimation of hazard for DNOP.     

Histidines 345 and 378 of <Emphasis Type="Italic">Bacillus stearotheromophilus</Emphasis> leucine aminopeptidase II are essential for the catalytic activity of the enzyme

The conserved histidine residues, His-191, His-227, His-345, and His-378, in Bacillus stearothermophilus leucine aminopeptidase II (LAPII) were replaced with leucine by site-directed mutagenesis. The overexpressed wild-type and mutant enzymes have been purified by nickel-chelate chromatography and their molecular masses were approximately 44.5 kDa. Under assay conditions, no LAP activity was detected in H345L and H378L. Although the K_m value for H191L increased more than 30% with respect to the wild-type LAPII, alteration in this residue did not lead to a significant change on the catalytic efficiency. The 39% decrease in K_cat/K_m for H227L was partly caused by a 3.9-fold increase in K_m value. Based on these results, it is suggested that His-345 and His-378 play a crucial role in the catalytic reaction of B. stearothermophilus LAPII.