Why is limb regeneration possible in amphibians but not in reptiles,birds, and mammals?

The capacity to regenerate limbs is very high in amphibians and practically absent in other tetrapods despite the similarities in developmental pathways and ultimate morphology of tetrapod limbs. We propose that limb regeneration is only possible when the limb develops as a semiautonomous module and is not involved in interactions with transient structures. This hypothesis is based on the following two assumptions: To an important extent, limb development uses the same developmental mechanisms as normal limb development and developmental mechanisms that require interactions with transient structures cannot be recapitulated later. In amniotes limb development is early, shortly after neurulation, and requires inductive interactions with transient structures such as somites. In amphibians limb development is delayed relative to amniotes and has become decoupled from interactions with somites and other transient structures that are no longer present at this stage. The limb develops as a semi-independent module. A comparison of the autonomy and timing of limb development in different vertebrate taxa supports our hypothesis and its assumptions. The data suggest a good correlation between self-organizing and regenerative capacity. Furthermore, they suggest that whatever barriers amphibians overcame in the evolution of metamorphosis, they are the same barriers that need to be overcome to make limb regeneration possible in other taxa.     

Environment–richness relationships for mammals,birds, reptiles,and amphibians at global and regional scales

Climate has been routinely indicated as a major determinant of broad-scale species richness patterns for a variety of taxa, but studies vary widely in attributing richness variation to the broad-scale distribution of energy, water, ecosystem productivity, habitat heterogeneity, or some combination thereof. Here, I report global and regional environment–richness relationships for the four classes of terrestrial vertebrates (mammals, birds, reptiles, amphibians) using identical sample units and the same set of climate (temperature, precipitation, annual actual evapotranspiration), productivity (normalized difference vegetation index), and topographic (elevation range) variables. My results strongly support concomitant availability of energy and water as the principal constraint on global richness for all vertebrate groups except reptiles, which are largely constrained by temperature. However, environment–richness models for all taxonomic groups varied widely when applied to single (continental-scale) biogeographic realms. In particular, I found strong support for the ‘water–energy dynamics hypothesis’ that models richness as a function of ambient energy (temperature) in high latitudes and water availability (precipitation) at low latitudes, partially independent of productivity. Ectotherm groups were more constrained by temperature than endotherms, and amphibians were more constrained by water availability than other groups. Although habitat heterogeneity, measured as elevation range, was a consistent contributor to global and regional richness models for all groups, its contribution was always minor compared to other variables. I conclude that temperature and water availability are key variables for modeling broad-scale vertebrate richness, but there remains significant room for taxon-specific modeling approaches and for the inclusion of non-climate factors related to evolutionary history and faunal assembly in different regions.     

Do bushmeat consumers have other fish to fry?

The overexploitation of tropical forests for bushmeat and of the oceans for fish are two of the most important threats to global biodiversity. Both phenomena also have manifold implications for human livelihoods and food security. A recent article by Brashares et al. indicates that these two resources are linked: when regional fish supplies are low, local bushmeat hunting intensifies. Although coordinated management of bushmeat and fisheries is thus needed, gaps in our knowledge of these systems must first be filled.     

Do homomorphic and heteromorphic self-incompatibility systems have the same sporophytic mechanism?

The view put forward by some authors that flowering plant self-incompatibility mechanisms of the homomorphic sporophytic and heteromorphic sporophytic types have a close evolutionary relationship, with one form being evolved from the other, or both forms directly evolved from ancestors with homomorphic gametophytic incompatibility, is challenged. A review is provided of the various facets of each of the three main self-incompatibility systems, including a detailed summary of our current knowledge of the rejection mechanism, to demonstrate that the implicit assumption that these systems have a common S locus, and also evolutionary theories linking the systems, need to be treated with considerable caution.     

Do mammalian amine oxidases and the mitochondrial polyamine transporter have similar protein structures?

Polyamine transport across the mitochondria membrane occurs by a specific, common uniporter system and appears controlled by electrostatic interactions as for polyamine oxidative deamination by bovine serum and mitochondrial matrix amine oxidases was found. In fact in all the cases, while the catalytic constants or the maximum uptake rate values show little changes with the number of the positive charges of the substrates, Michaelis–Menten constant values demonstrate exponential dependence, confirming that electrostatic forces control the docking of the substrate into the enzyme active site or polyamine channel. By the treatment of the kinetic data in terms of Gibbs equation or Eyring theory, the contribution of each positive charge of the polyamine to the Gibbs energy values for the oxidative deamination of polyamines by two mammalian amine oxidase and for polyamine transport, are obtained. These values were comparable and in good accordance with those reported in literature. Previous studies demonstrated that two negative functional groups in the active site of bovine serum and mitochondrial matrix amine oxidases interact electrostatically with three positive charges of the polyamines in the formation of the enzyme–substrate complex. Remembering the structure–function relationship of proteins, our results suggest analogous interactions in the polyamine transporter and, as a consequence, a partial structural similitude between two proteins. It follows that the primary sequences of the amino oxidases and the mitochondrial transport may, in part, be conserved.     

Do coral-reef fish faunas have a distinctive taxonomic structure?

Do the highly diverse fish faunas that associate with coral reefs have distinguishing taxonomic and ecological characteristics, as proposed by Choat and Bellwood (1991) and Bellwood (1996)? Does a 50?my old (Eocene) fossil fish fauna from Italy represent a coral-reef fish assemblage that provides unique information about the evolution of such assemblages, as claimed by Bellwood (1996)? I compared the structure of the reef fish faunas of adjacent tropical regions rich and poor in coral reefs, in both America and Polynesia, and found that they exhibit no substantive differences in relative species richness among families of typical “coral-reef” fishes. While coral-rich regions have larger reef fish faunas, a variety of factors probably contribute to such differences. Thus coral-reef fish faunas may lack a distinctive taxonomic structure. A similar comparative approach would be useful for assessing whether assemblages of fishes on coral reefs have distinctive ecological characteristics. Based on patterns of habitat use by modern tropical shorefishes, the Italian Eocene fauna includes few definite reef fishes, and may well consist primarily of non-reef fishes preserved in a non-reef habitat. Until we know more about the environment in which those fossils were preserved, that fauna can contribute little to understanding how coral reef fish assemblages have evolved.     

CMA restricted to mammals and birds: myth or reality?

Chaperone-mediated autophagy (CMA) is a major pathway of lysosomal proteolysis essential for the control of intermediary metabolism. So far, the absence of any identifiable LAMP2A – a necessary and limiting protein for CMA – outside of the tetrapod clade, led to the paradigm that this cellular function was (presumably) restricted to mammals and birds. However, after we identified expressed sequences displaying high sequence homology with the mammalian LAMP2A in several fish species, our findings challenge that view and suggest that CMA likely appeared much earlier during evolution than initially thought. Hence, our results do not only shed an entirely new light on the evolution of CMA, but also bring new perspectives on the possible use of complementary genetic models, such as zebrafish or medaka for studying CMA function from a comparative angle/view.     

Ecological assessment of running waters: Do macrophytes,macroinvertebrates, diatoms and fish show similar responses to human pressures?

This study aimed to compare the intensity and the sensitivity of the responses of four river biological quality elements (BQEs) – macrophytes, fish, diatoms and macroinvertebrates – to human pressures excluding natural variations in stream ecosystem functioning. Biological, water quality and hydro-morphological data were compiled for 290 French river sites.Out of the 93 metrics tested, 51 covering the four BQEs responded significantly to global degradation. The responses to specific pressures were consistent with the BQEs’ ecological and biological characteristics. For the four BQEs, metrics responded strongly to water quality degradations. Like fish, macroinvertebrate metrics were very sensitive to morphological degradations such as the presence of an impoundment, while diatom and macrophyte metrics did not show strong responses to these changes. Among the four BQEs’ metrics, fish metrics responded the strongest to hydrological perturbations. Although a high proportion of the metrics responded only to high levels of human-induced degradations, trait-based metrics seemed the most sensitive and responded to lower levels of pressure. Global and water quality degradations of the river appear to be better detected by BQE metrics than channel morphological and hydrological degradations. Our results highlight the different impacts of human-induced pressures on the four BQE metrics and the challenging task of assessing the effect of single pressures when most of sites are multi-impacted.     

What determines the impact of alien birds and mammals in Europe?

An often-cited reason for studying the process of invasion by alien species is that the understanding sought can be used to mitigate the impacts of the invaders. Here, we present an analysis of the correlates of local impacts of established alien bird and mammal species in Europe, using a recently described metric to quantify impact. Large-bodied, habitat generalist bird and mammal species that are widespread in their native range, have the greatest impacts in their alien European ranges, supporting our hypothesis that surrogates for the breadth and the amount of resources a species uses are good indicators of its impact. However, not all surrogates are equally suitable. Impacts are generally greater for mammal species giving birth to larger litters, but in contrast are greater for bird species laying smaller clutches. There is no effect of diet breadth on impacts in birds or mammals. On average, mammals have higher impacts than birds. However, the relationships between impact and several traits show common slopes for birds and mammals, and relationships between impact and body mass and latitude do not differ between birds and mammals. These results may help to anticipate which species would have large impacts if introduced, and so direct efforts to prevent such introductions.     

Do migrant birds have more pointed wings?: A comparative study

Summary Do birds that migrate over longer distances have more pointed wings than more sedentary birds? Within several bird genera, species differ considerably in their migration distances. This makes it possible to study the extent to which different taxa show similar morphological solutions to common selection pressures. I selected 14 species, two from each of seven passerine genera, to maximize within-genus differences in migration distance. Wing lengths and the lengths of eight primary feathers around the wing tip were measured to assess wing length and shape. Primary lengths were transformed to take into account the allometric relationship between the length of each feather and wing length and then collapsed into summary measures of shape by principal component analysis. I used the method of independent contrasts to address the effects of phylogeny. Wing length showed no relationship with migration distance. There was a correlation between migration distance and wing shape. It is concluded that long-distance migration has resulted in convergent morphological evolution of long distal and short proximal primaries, resulting in wing tips close to the leading edge of the wing.     

Do lichens have “memory” of their native nitrogen environment?

This study aimed to deepen the knowledge about intraspecific mechanisms regulating nitrogen tolerance in lichens to wet nitrogen deposition. Thalli of the nitrophilous lichen Xanthoria parietina were collected from environments with different nitrogen availabilities and immersed in 80 mL of ammonium sulphate (NH₄)₂SO₄ solutions with distinct concentrations (0, 0.025, 0.05 and 0.25 M) for 5 h per day during 3 days in a week. After each soaking event, lichens were air dried. After each treatment, maximal PSII efficiency, localization of ammonium ions, concentrations of K⁺ and Mg²⁺ and thalli buffer capacity were determined. Our results show that lichens are marked by their native nitrogen environment, since there were important differences between the physiological responses of X. parietina thalli previously grown in an area with high nitrogen deposition (nitrogen emissions of ca. 13,000 t/year) and those previously grown in an unpolluted area (nitrogen emissions of ca. 500 t/year). Greater N availability seems to enable X. parietina to cope better with the effects of nitrogen pollution.     

Do fish larvae have advantages over adults and other components for assessing estuarine ecological quality?

Using a novel approach to the assessment of ecological quality status of estuarine ecosystems, this study hypothesizes that compared to adult fishes and other components, the younger fish stages will be more sensitive and act as an early warning and will reflect more effectively the ecological status of estuaries. Larval stages of fishes were used to assess the ecological quality status (EQS) of four NW Portuguese estuaries, with different types and magnitudes of human pressures. The larval fish assemblages, together with water column characteristics and pollution indicators (faecal contamination and nutrient load) were sampled in the Lima, Cávado, Ave and Douro estuaries, during spring and autumn 2009. The four estuaries were classified in terms of human pressures by a global pressure index that identified the Cávado estuary as the least impacted estuary, followed by the Ave and Lima, both classified as moderately impacted system, while the Douro was classified as a highly impacted system. The Ave emerged as the most polluted system, carrying the highest nutrient load and sewage contamination. Larval fish assemblages included estuarine species, marine migrants, marine stragglers and the larger estuaries had higher species richness. Compared to adult fishes, three multimetric fish-based indices classified the Cávado, Ave and Douro estuaries with a lower ecological status when fish larvae were used. Similarly, the EQS assessed by macroinvertebrates were equal or higher when compared with fish larvae results. The EQS assessed by fish larvae was negatively correlated with sewage contamination and nitrogen nutrients, but did not reflect other anthropogenic pressures expressed by the global pressure index, which was only detected by adult fish. Fish larvae assessments were able to detect short-time events of hydrological manipulations observed in the Cávado estuary, as well as a seasonal decrease of water quality especially evident in the Ave estuary. The indices used denoted some limitations to the use of fish larvae data, thus emphasising the need for new indices to test the observed tendency for lower EQS given by fish larvae. The advantages and disadvantages of using fish larvae as more sensitive and accurate bioindicators of ecosystem integrity is also discussed as a means of providing strategically important information for improved estuarine management.     

Do birds differentiate between white noise and deterministic chaos?

Noisy, unpredictable sounds are often present in the vocalizations of fearful and stressed animals across many taxa. A variety of structural characteristics, called nonlinear acoustic phenomena, that include subharmonics, rapid frequency modulations, and deterministic chaos are responsible for the harsh sound quality of these vocalizations. Exposure to nonlinear sound can elicit increased arousal in birds and mammals. Past experiments have used white noise to test for effects of deterministic chaos on perceivers. However, deterministic chaos differs structurally from white noise (i.e., random signal with equal energy at all frequencies), and unlike white noise, may differ dramatically depending on how it is produced. In addition, the subtle structural variation of chaos may not be distinguishable in the environment due to the attenuation and degradation of sound over distance and different habitat types. We designed two experiments to clarify whether American robins (Turdus migratorius) and warbling vireos (Vireo gilvus) discriminate between white noise and deterministic chaos. We broadcast and re‐recorded white noise and two exemplars of deterministic chaos—one generated with a Chua oscillator and the other generated using a logistic equation—at 1, 10, 20, 30, 40, and 80 m across open and forested habitat and used spectrogram correlations to compare stimuli along this degradational gradient. We found that sounds degraded similarly in both habitats when compared to a reference distance of 1 m. Comparing pairs of stimuli across distances suggested that Chua chaos was more easily distinguishable from noise and logistic chaos. In addition, all stimuli became more distinctive over increased distance. The second experiment tested behavioral responses of robins and warbling vireos to control sounds of tropical kingbird (Quiscalus mexicanus), white noise, and two exemplars of deterministic chaos (Chua and logistic). Neither American robins nor warbling vireos responded differently to at least two types of deterministic chaos and white noise, validating previous playback studies that used white noise as a surrogate for deterministic chaos. Uniform responses to a variety of nonlinear features in these birds possibly reflect error management in alarm signal detection.     

Trophic ecology of parabiotic ants: Do the partners have similar food niches?

Organisms associated with another species may experience both costs and benefits from their partner. One of these costs is competition, which is the more likely if the two species are ecologically similar. Parabioses are associations between two ant species that share a nest and often attend the same food sources. Albeit parabioses are probably mutualistic, parabiotic partners may compete for food. We therefore investigated feeding niches and dietary overlap of two parabiotically associated ants in Borneo using cafeteria experiments and stable isotope analyses. The two species strongly differed in their food choices. While Crematogaster modiglianii mostly foraged at carbohydrate‐rich baits, Camponotus rufifemur preferred urea‐rich sources. Both species also consumed animal protein. The ¹⁵N concentration in Ca. rufifemur workers was consistently lower than in Cr. modiglianii. Camponotus rufifemur but not Cr. modiglianii possesses microbial endosymbionts, which can metabolize urea and synthesize essential amino acids. Its lower ¹⁵N signature may result from a relatively higher intake of plant‐based or otherwise ¹⁵N‐depleted nitrogen. Isotopic signatures of the two partners in the same parabiosis showed strongly parallel variation across nests. As we did not find evidence for spatial autocorrelation, this correlation suggests an overlap of food sources between the two ant species. Based on model simulations, we estimated a diet overlap of 22–66% for nitrogen sources and 45–74% for carbon sources. The overlap may arise from either joint exploitation of the same food sources or trophallactic exchange of food. This suggests an intense trophic interaction and potential for competition between the parabiotic partners.     

The rise of birds and mammals: are microevolutionary processes sufficient for macroevolution?

It is a basis of darwinian evolution that the microevolutionary mechanisms that can be studied in the present are sufficient to account for macroevolution. However, this idea needs to be tested explicitly, as highlighted here by the example of the superceding of dinosaurs and pterosaurs by birds and placental mammals that occurred near the Cretaceous/Tertiary boundary approximately 65 million years ago. A major problem for testing the sufficiency of microevolutionary processes is that independent ideas (such as the existence of an extraterrestrial impact, and the extinction of dinosaurs) were linked without the evidence for each idea being evaluated separately. Here, we suggest and discuss five testable models for the times and divergences of modern mammals and birds. Determination of the model that best represents these events will enable the role of microevolutionary mechanisms to be evaluated. The question of the sufficiency of microevolutionary processes for macroevolution is solvable, and available evidence supports an important role for biological processes in the initial decline of dinosaurs and pterosaurs.     

Sex-biased survival and philopatry in birds: Do they interact?

A review of studies of sex-biased dispersal and philopatry and sex-biased survival in birds is presented. The comparison between sex-related mortality and natal and breeding dispersal at the species-level shows that dispersing birds (mainly females) suffer higher mortality, while philopatric birds (mainly males) have higher survival. The interaction between sex-biased survival and spatial behavior is a crucial component of avian vital strategy, which determine population dynamics and genetic structure.     

Do birds possess brown adipose tissue?

• 1.1. Fluorescence and electron microscopy were used to visualize differences between avian adipose tissue (AAT) collected from clavicular and abdominal regions of the great tit, the willow tit, the house sparrow and the Japanese quail, and interscapular brown adipose tissue (BAT) obtained from the Djungarian dwarf hamster.
• 2.2. Multilocular fat cells were found in AAT. The prerequisite for multilocularity, however, was not simply winter acclimatization [short photophase 4L:20D and low ambient temperature (< −20°C in January in Oulu)] or cold-acclimation (−25°C). Multilocular adipocytes were found during autumn and in unacclimated control birds as well. Mitochondria in the AAT were fewer and about one-sixth the length of those in BAT. This finding was associated with low cytochrome oxidase (COX) activity in the tissue homogenate and isolated mitochondrial fraction of the AAT (< 5.2% of that in BAT).
• 3.3. Catecholamine fluorescence was seen only around arteries in the AAT. Signs of sympathetic parenchymal innervation were found neither in winter- nor in cold-acclimated birds, but typically, sympathetic nerve fibers forming a basket-like network around every cell were seen in the brown fat of the hamster.
• 4.4. Our results show that AAT in the adult birds resembles white adipose tissue more than brown. Multilocularity of adipocytes may improve lipolysis to deliver fatty acids for muscle fuel of shivering or NST.