Autophagy in metazoans: cell survival in the land of plenty

Cells require a constant supply of macromolecular precursors and oxidizable substrates to maintain viability. Unicellular eukaryotes lack the ability to regulate nutrient concentrations in their extracellular environment. So when environmental nutrients are depleted, these organisms catabolize existing cytoplasmic components to support ATP production to maintain survival, a process known as autophagy. By contrast, the environment of metazoans normally contains abundant extracellular nutrients, but a cell's ability to take up these nutrients is controlled by growth factor signal transduction. Despite evolving the ability to maintain a constant supply of extracellular nutrients, metazoans have retained a complete set of autophagy genes. The physiological relevance of autophagy in such species is just beginning to be explored.     

Zinc biofortification of cereals: problems and solutions

The goal of biofortification is to develop plants that have an increased content of bioavailable nutrients in their edible parts. Cereals serve as the main staple food for a large proportion of the world population but have the shortcoming, from a nutrition perspective, of being low in zinc and other essential nutrients. Major bottlenecks in plant biofortification appear to be the root-shoot barrier and - in cereals - the process of grain filling. New findings demonstrate that the root-shoot distribution of zinc is controlled mainly by heavy metal transporting P(1B)-ATPases and the metal tolerance protein (MTP) family. A greater understanding of zinc transport is important to improve crop quality and also to help alleviate accumulation of any toxic metals.     

Nutrients-mediated shift in temporal expression of phytochrome controlled β-amylase synthesis in mustard (Sinapis alba L.) cotyledons

Abstract. In cotyledons of mustard ( Sinapis alba L.) seedlings grown with distilled water (DW) phytochrome controlled increase in β-amylase (E.C. 3.2.1.2) level takes place at about 42 h after sowing (starting point), while the photoresponse escapes from photoreversibility at 30 h after sowing. The temporal onset of starting point is presumed to be determined by innate process of developmental homeostasis, which is not amenable to influence of environmental factors such as light and nutrients. However, the temporal appearance of onset of phytochrome controlled increase in β-amylase level (starting point) in seedlings grown with Hoagland's nutrient solution (HS) is delayed by 9 h as compared to DW-grown seedlings. Concomitantly, the temporal appearance of the loss of photoreversibility of phytochrome mediated increase in β-amylase level (coupling point) is also delayed by 9 h in HS-grown seedlings. HS does not influence the primary action of phytochrome, the lifetime of components involved in signal chain of above photoresponse and the turnover of β-amylase enzyme. These results indicate that HS-induced temporal shift in onset of starting point of above photoresponse is caused by interaction of nutrients with the process of developmental homeostasis.     

The evolutionary basis of leaf senescence: method to the madness?

Recent studies on the differential expression of genes associated with leaf senescence support the long-standing interpretation of plant senescence as an organized, genetically controlled process. Sequence identities of genes that are differentially expressed in senescing leaves indicate roles in the salvage of nutrients. By considering this salvage function as the selected trait and the degeneration and death of the tissue a pleiotropic consequence of nutrient redistribution, the process of leaf senescence can be reconciled with evolutionary theories on the origins of senescence in animals.     

Strain driven transport for bone modeling at the periosteal surface

Bone modeling and remodeling has been the subject of extensive experimental studies. There have been several mathematical models proposed to explain the observed behavior, as well. A different approach is taken here in which the bone is treated from a macroscopic view point. In this investigation, a one-dimensional analytical model is used to shed light on the factors which play the greatest role in modeling or growth of cortical bone at the periosteal surface. It is presumed that bone growth is promoted when increased amounts of bone nutrients, such as nitric oxide synthase (NOS) or messenger molecules, such as prostaglandin E₂ (PGE₂), seep out to the periosteal surface of cortical bone and are absorbed by osteoblasts. The transport of the bone nutrients is assumed to be a strain controlled process. Equations for the flux of these nutrients are written for a one-dimensional model of a long bone. The obtained partial differential equation is linearized and solved analytically. Based upon the seepage of nutrients out of the bone, the effect of loading frequency, number of cycles and strain level is examined for several experiments that were found in the literature. It is seen that bone nutrient seepage is greatest on the tensile side of the bone; this location coincides with the greatest amount of bone modeling.     

Olive mill wastewater remediation by means of Pleurotus ostreatus

Results of a research program on raw olive-mill wastewater (OMW) bioremediation are presented. Bioremediation experiments have been carried out both in an airlift bioreactor and in aerated flasks, using Pleurotus ostreatus. The process was investigated under controlled non-sterile operating conditions, representative of industrial operation. Growth of P. ostreatus as well as polyphenols conversion were assessed. OMW bioconversion was characterized in terms of total organic carbon, polyphenols concentration, phenol oxidase activity, extent of decolourization and pH as a function of time. Results demonstrate that: P. ostreatus effectively grows on raw OMW; polyphenols abatement is controlled by the availability of nutrients and can be as large as 95%; bioconversion of non-sterilized OMW does not result into appreciable decolourization of the liquid medium. The use of an internal loop airlift bioreactor as a candidate for the full-scale implementation of an OMW aerobic bioremediation process is demonstrated.     

Effects of irradiance, temperature, and nutrients on growth dynamics of seagrasses: A review

Productivity of seagrasses can be controlled by physiological processes, as well as various biotic and abiotic factors that influence plant metabolism. Light, temperature, and inorganic nutrients affect biochemical processes of organisms, and are considered as major factors controlling seagrass growth. Minimum light requirements for seagrass growth vary among species due to unique physiological and morphological adaptations of each species, and within species due to photo-acclimation to local light regimes. Seagrasses can enhance light harvesting efficiencies through photo-acclimation during low light conditions, and thus plants growing near their depth limit may have higher photosynthetic efficiencies. Annual temperatures, which are highly predictable in aquatic systems, play an important role in controlling site specific seasonal seagrass growth. Furthermore, both thermal adaptation and thermal tolerance contribute greatly to seagrass global distributions. The optimal growth temperature for temperate species range between 11.5 °C and 26 °C, whereas the optimal growth temperature for tropical/subtropical species is between 23 °C and 32 °C. However, productivity in persistent seagrasses is likely controlled by nutrient availability, including both water column and sediment nutrients. It has been demonstrated that seagrasses can assimilate nutrients through both leaf and root tissues, often with equal uptake contributions from water column and sediment nutrients. Seagrasses use HCO₃⁻ inefficiently as a carbon source, thus photosynthesis is not always saturated with respect to DIC at natural seawater concentrations leading to carbon limitation for seagrass growth. Our understanding of growth dynamics in seagrasses, as it relates to main environmental factors such as light, temperature, and nutrient availability, is critical for effective conservation and management of seagrass habitats.     

Improving knowledge of plant tissue culture and media formulation by neurofuzzy logic: a practical case of data mining using apricot databases

Plant tissue growth can be regulated and controlled via culture media composition. A number of different laborious and time-consuming approaches have been used to attempt development of optimized media for a wide range of species and applications. However, plant tissue culture is a very complex task, and the identification of the influences of process factors such as mineral nutrients or plant growth regulators on a wide spectrum of growth responses cannot always well comprehended.This study employs a new approach, data mining, to uncover and integrate knowledge hidden in multiple data from plant tissue culture media formulations using apricot micropropagation databases as an example. Neurofuzzy logic technology made it possible to identify relationships among several factors (cultivars, mineral nutrients and plant growth regulators) and growth parameters (shoots number, shoots length and productivity), extracting biologically useful information from each database and combining them to create a model. The IF-THEN rule sets generated by neurofuzzy logic were completely in agreement with previous findings based on statistical analysis, but advantageously generated understandable and reusable knowledge that can be applied in future plant tissue culture media optimization.     

Role of ultrasound in assisted fermentation technologies for process enhancements

Abstract

Biological molecules are widely produced by fermentation technology using bacteria, fungi or yeast. Fermentation is a biochemical process wherein the rate of bioconversion is governed by the organisms involved. The growth of the organism is mainly limited by mass transfer rates of nutrients and gases that directly affect the product formation in fermentation. Attempts have been made to enhance the growth rate and yield using mutational, recombinant strain development approach at microbial level as well as fed batch and continuous processing approach at bioprocess level in the past. The growth rate of microbes can be accelerated by increased mass transfer rates and cell wall permeability with the use of controlled low frequency ultrasound irradiation. The present review provides insights into the application of acoustic cavitation in process intensification of fermentation approaches and the role of various factors involved are highlighted with typical examples.     

Strategies for dephenolization of raw olive mill wastewater by means of <Emphasis Type="Italic">Pleurotus ostreatus</Emphasis>

The reduction of polyphenols content in olive mill wastewater (OMW) is a major issue in olive oil manufacturing. Although researchers have pointed out the potential of white-rot fungus in dephenolizing OMW, the results available in the literature mainly concern pretreated (sterilized) OMW. This paper deals with the reduction of polyphenols content in untreated OMW by means of a white-rot fungus, Pleurotus ostreatus. Dephenolization was performed both in an airlift bioreactor and in aerated flasks. The process was carried out under controlled non-sterile conditions, with different operating configurations (batch, continuous, biomass recycling) representative of potential industrial operations. Total organic carbon, polyphenols concentration, phenol oxidase activity, dissolved oxygen concentration, oxygen consumption rate, and pH were measured during every run. Tests were carried out with or without added nutrients (potato starch and potato dextrose) and laccases inducers (i.e., CuSO₄). OMW endogenous microorganisms were competing with P. ostreatus for oxygen during simultaneous fermentation. Dephenolization of raw OMW by P. ostreatus under single batch was as large as 70%. Dephenolization was still extensive even when biomass was recycled up to six times. OMW pre-aeration had to be provided under continuous operation to avoid oxygen consumption by endogenous microorganisms that might spoil the process. The role of laccases in the dephenolization process has been discussed. Dephenolization under batch conditions with biomass recycling and added nutrients proved to be the most effective configuration for OMW polyphenols reduction in industrial plants (42–68% for five cycles).     

Control of Translation Initiation through Integration of Signals Generated by Hormones,Nutrients, and Exercise

Control of translation initiation in a tissue of an intact mammalian organism is a highly complex process requiring the continuous integration of multiple positive and negative stimuli. For a tissue such as skeletal muscle, which has the capacity to undergo dramatic changes in size and protein content, translation initiation contributes importantly to the regulation of global rates of protein synthesis and is controlled by numerous stimuli, including those arising from nutrients and hormones in the circulating blood, as well as from contraction-induced signaling within the tissue. Many of the pathways conveying signals generated by these stimuli converge on mTORC1, a serine-threonine protein kinase that has been termed the nutrient and energy sensor of the cell and that plays a prominent role in the regulation of cell growth. Control of translation initiation by mTORC1 is mediated through phosphorylation of downstream targets that modulate the binding of mRNA to the 43 S preinitiation complex. Control of translation initiation is also mediated through modulation of binding of initiator methionyl-tRNA to the 40 S ribosomal subunit. Together, modulation of these two regulatory steps in translation initiation accounts in large part for changes in protein synthesis in skeletal muscle produced by the integration of inputs from hormones, nutrients, and exercise.     

浑善达克沙地小叶锦鸡儿灌丛的空间异质性

豆科锦鸡儿属(C arag ana)植物因其可以生物固氮而在草原生态系统中具有特殊的地位。定量分析小叶锦鸡儿(C arag anam icrophy lla)灌丛在浑善达克沙地不同生境条件下的分布格局,有助于理解植被与土壤养分循环之间的关系和合理制定退化沙地的恢复对策。采用地统计学中的半方差分析和分形分析两种方法研究了浑善达克沙地小叶锦鸡儿灌丛的空间分布格局,分析了不同生境中小叶锦鸡儿灌丛的植被、土壤水分和养分间的相关性。结果表明:(1)小叶锦鸡儿灌丛在3种生境条件下(滩地、固定沙丘和半固定沙丘)的盖度、土壤有机质和全氮的空间分布符合球状模型,空间自相关显著;(2)土壤pH值在滩地和固定沙丘的空间分布符合球状模型且空间自相关显著,但在半固定沙丘空间自相关不显著;(3)土壤水分在3种生境中的空间分布都符合线性模型,空间自相关显著。(4)植被的变异尺度(变程)小于各个土壤要素的变异尺度。植被(小叶锦鸡儿灌丛)的分布和形成过程决定了土壤养分的分布和形成过程。当地的小叶锦鸡儿灌丛在养分“沃岛”现象的形成中起了重要作用,合理的利用和布局当地的小叶锦鸡儿灌丛的分布,可以更加有效地补充草地生态系统的养分,从而有利于加快生态系统的恢复进程。     

Response of three phytoplankton bioassay techniques in experimental ponds of known limiting nutrient

In a controlled enrichment study of eight experimental ponds, results from the batch bioassay, primary productivity incubation bioassay, and chemostat techniques for measuring limiting factors of phytoplankton algae were compared to the change in the natural system with nutrient addition. In the ponds, rapid and dramatic increase in both phytoplankton biomass and primary productivity upon the addition of nitrogen and phosphorus fertilizer offered conclusive evidence that these nutrients were limiting in the control ponds to which no nutrients were added. Both the batch bioassay and chemostat techniques clearly indicated nitrogen and possibly phosphorus as the limiting factors; however, the primary productivity incubation bioassay technique showed no increase in ¹⁴C uptake with addition of these nutrients. A species- and/or nutrient-specific time lag between nutrient uptake and increased carbon fixation is suggested to explain the failure of the technique to yield positive results within the 4-hour incubation period used.     

Stability and stabilization for models of chemostats with multiple limiting substrates

We study chemostat models in which multiple species compete for two or more limiting nutrients. First, we consider the case where the nutrient flow and species removal rates and input nutrient concentrations are all given as positive constants. In that case, we use Brouwer degree theory to give conditions guaranteeing that the models admit globally asymptotically stable componentwise positive equilibrium points, from all componentwise positive initial states. Then we use the results to develop stabilization theory for a class of controlled chemostats with two or more limiting nutrients. For cases where the dilution rate and input nutrient concentrations can be selected as controls, we prove that many different componentwise positive equilibria can be made globally asymptotically stable. This extends the existing control results for chemostats with one limiting nutrient. We demonstrate our methods in simulations.     

Stability and stabilization for models of chemostats with multiple limiting substrates

We study chemostat models in which multiple species compete for two or more limiting nutrients. First, we consider the case where the nutrient flow and species removal rates and input nutrient concentrations are all given as positive constants. In that case, we use Brouwer degree theory to give conditions guaranteeing that the models admit globally asymptotically stable componentwise positive equilibrium points, from all componentwise positive initial states. Then we use the results to develop stabilization theory for a class of controlled chemostats with two or more limiting nutrients. For cases where the dilution rate and input nutrient concentrations can be selected as controls, we prove that many different componentwise positive equilibria can be made globally asymptotically stable. This extends the existing control results for chemostats with one limiting nutrient. We demonstrate our methods in simulations.     

Importance of Cycling and Recycling of Mineral Nutrients within Plants for Growth and Development

Cycling of mineral nutrients, i.e. retranslocation in the phloem from the shoot to the roots, and recycling, i.e. translocation of cycled nutrients back in the xylem to the shoot can contribute substantially to the fluxes of phloem-mobile nutrients between roots and shoot. Cycling and recycling of nutrients serves several well defined functions. These include supplying the root with nutrients assimilated in the shoot (nitrate and sulphate reduction), maintenance of cation-anion balance, providing additional driving force for solute flow in the xylem and phloem, and acting as a shoot signal to convey nutrient demand to the roots. Cycling of mineral nutrients like K is also required to cover the demand for growth of apical root zones and to smooth out fluctuations that occur spatially and with time in the external nutient supply of soil-grown plants. Cycling and recycling of mineral nutrients is also closely related to the process of phloem loading and export of photosynthates from source leaves. This is particularly true for potassium, magnesium and phosphorus. Nutrient deficiency-induced shifts in dry matter partitioning between shoot and roots are therefore closely related to the solute flow in the phloem not only of photosynthates but also mineral nutrients from source leaves to roots. More research is needed, however, to elucidate in greater detail the contribution of cycling and recycling of mineral nutrients in the integration of growth processes at the whole plant level.     

Control of pH in large-scale, free suspension animal cell bioreactors: alkali addition and pH excursions

It is likely that, in the future, animal cell cultures of a higher cell density and/or cell lines with higher specific oxygen demands will be available. Such developments will lead to the need for improved homogeneity in the bioreactor and a greater supply of nutrients. The accompanying significant increase in CO(2) production and accumulation and the resulting reduction in pH are also important implications for process engineering. Such pH reduction is typically controlled by the addition of sodium carbonate. Previous studies using flow visualization mimicking the operating conditions in a typical plant-scale reactor showed potentially cell-damaging regions within it due to pH excursions. This paper confirms the existence of these excursions by pH measurements in the alkali addition zone. It also identifies the accumulation of alkali in a region of poor local liquid homogenization as a serious scale-up problem and shows how a change in the addition point significantly reduces it.     

Life-cycle assessment of microalgae culture coupled to biogas production

Due to resource depletion and climate change, lipid-based algal biofuel has been pointed out as an interesting alternative because of the high productivity of algae per hectare and per year and its ability to recycle CO₂ from flue gas. Another option for taking advantage of the energy content of the microalgae is to directly carry out anaerobic digestion of raw algae in order to produce methane and recycle nutrients (N, P and K). In this study, a life-cycle assessment (LCA) of biogas production from the microalgae Chlorella vulgaris is performed and the results are compared to algal biodiesel and to first generation biodiesels. These results suggest that the impacts generated by the production of methane from microalgae are strongly correlated with the electric consumption. Progresses can be achieved by decreasing the mixing costs and circulation between different production steps, or by improving the efficiency of the anaerobic process under controlled conditions. This new bioenergy generating process strongly competes with others biofuel productions.     

Fecundity, lifespan and egg mass in butterflies: effects of male-derived nutrients and female size

1. Effects of larval reserves and nutrients received as adults on fecundity and lifespan in female Danaus plexippus (the Monarch Butterfly) were measured to determine the relative importance of different sources of nutrients for reproduction and somatic maintenance.
2. Egg-laying lifespan was correlated with female size but not with the amount of male-derived nutrients or adult food concentration.
3. Lifetime fecundity was higher when females received a large first spermatophore, but was not affected by female size when lifespan was controlled or by adult food concentration.
4. At the end of their lives, females contained unlaid eggs and retained, on average, 88% of their initial mass. This proportion was unchanged in two years, although mean egg-laying lifespan varied from 22·5 to 28·7 days.
5. Egg mass decreased over the female lifespan, and was correlated with female size.
6. These results suggest that larval reserves are more important for somatic maintenance than adult income, but that the protein-rich nutrients received from males contribute to egg production. This supports theoretical predictions and empirical studies of other Lepidoptera showing that larval reserves are less likely to affect fecundity when the adult income can contribute substantially to egg production.     

The co-evolution of phytoplankton and trace element cycles in the oceans

The composition of the oceans and of its biota have influenced each other through Earth's history. Of all the biologically essential elements, nitrogen is the only one whose seawater concentration is clearly controlled biologically; this is presumably the main reason why the stoichiometry of nitrogen (defined as its mol ratio to phosphorus), but not that of the trace nutrients manganese, iron, cobalt, nickel, copper, zinc and cadmium, is the same in seawater and in the plankton. Like the major nutrients, the trace nutrients are depleted in surface seawater as a result of quasi-complete utilization by the biota. This is made possible in part by the ability of marine phytoplankton to replace one trace metal by another in various biochemical functions. This replacement also results in an equalization of the availability of most essential trace metals in surface seawater. The difference in the stoichiometric composition of the plankton and of deep seawater, which is the dominant source of new nutrients to the surface, indicates that some nutrients are likely recycled with different efficiencies in the photic zone. The difference in the composition of the ocean and its biota provides insight into the coupling of biochemistry and biogeochemistry in seawater.