Models of climate associations and distributions of amphibians in Italy

Analyzing the relationships between the distribution of animal species and climatic variables is not only important for understanding which factors govern species distribution but also for improving our ability to predict future ecological responses to climate change. In the context of global climate change, amphibians are of particular interest because of their extreme sensitivity to the variation of temperature and precipitation regimes. We analyzed species–climate relationships for 17 amphibian species occurring in Italy using species distribution data at the 10 × 10 km resolution. A machine learning method, Random Forests, was used to model the distribution of amphibians in relation to a set of 18 climatic variables. The results showed that the variables which had the highest importance were those related to precipitation, indicating that precipitation is an important factor in determining amphibian distribution. Future projections showed a complex response of species distributions, emphasizing the potential severity of climate change on the distributions of amphibians in Italy. The species that will decrease the most are those occurring in mountainous and Mediterranean areas. Our results provide some preliminary information that could be useful for amphibian conservation, indicating if future conservation priorities for some species should be enhanced.     

The risk of invasion by angiosperms peaks at intermediate levels of human influence

Biological invasions are a growing threat to biodiversity. The control and eradication of exotic species established in earnest are of limited success despite high financial investments. Anticipating biological invasions based on species’ suitabilities is a cost-effective strategy given it helps identifying areas where exotic species can prosper, which can then translate in improving management and conservation efforts. Based on information from 191 invasive angiosperm species worldwide, we used ecological niche models to identify areas at high risk of invasion (cumulative predicted distribution of invasive species) in Mexico. Further, we explored the importance of bioclimatic and human influence variables as drivers of the distribution of invasive species and analyzed the status of the currently recognized priority conservation sites in Mexico. We found that areas with intermediate human activity scores had a high risk of invasion. Additionally, we found that many of the current priority conservation sites in Mexico had a high risk of invasion. Our findings contribute to disentangling the factors that drive environment susceptibility to invasions and urge management strategies to minimize the impacts of biological invasions in priority conservation sites.     

The distribution of amphibian species richness in protected areas of Chiapas,Mexico

Due to the current environmental crisis, many animal species face extinction problems. Amphibian populations have been affected by this crisis. Our goal is to study amphibian species diversity in Chiapas, which has 7.6% of the endemic amphibians in Mexico and 53 protected areas. Only 58% of the protected areas have management plans or information on their resident amphibians. We aim to determine the extent of protection provided by the network of natural areas for the conservation of amphibian species in the state and to discuss the effectiveness of this protection. Therefore, we compiled a georeferenced database of 112 amphibian species in Chiapas to create each distribution model. In addition, we carried out representativeness, beta diversity, and species richness analyses. As a result, we obtained a high degree of representativeness for the records and species distribution models. However, we found a decrease in the richness of amphibians involving 20% of total species, 13% of endemics, 18% threatened according to NOM-059, and 31% threatened according to IUCN between 1800 and 2020 and 1980–2020. We also identified two biodiversity hotspots in the Sierra Madre de Chiapas and the Northern Highlands physiographic regions. Finally, based on potential distributions, we found more endemic and threatened species outside protected natural areas than inside them. Our results give a broader picture of how amphibian richness is distributed in Chiapas. This information can help to prioritize conservation efforts toward those areas rich in threatened or endemic species, such as the Northern Mountains Hotspot we identified in northern Chiapas.     

Indicators of the Statuses of Amphibian Populations and Their Potential for Exposure to Atrazine in Four Midwestern U.S. Conservation Areas

Extensive corn production in the midwestern United States has physically eliminated or fragmented vast areas of historical amphibian habitat. Midwestern corn farmers also apply large quantities of fertilizers and herbicides, which can cause direct and indirect effects on amphibians. Limited field research regarding the statuses of midwestern amphibian populations near areas of corn production has left resource managers, conservation planners, and other stakeholders needing more information to improve conservation strategies and management plans. We repeatedly sampled amphibians in wetlands in four conservation areas along a gradient of proximity to corn production in Illinois, Iowa, Minnesota, and Wisconsin from 2002 to 2005 and estimated site occupancy. We measured frequencies of gross physical deformities in recent metamorphs and triazine concentrations in the water at breeding sites. We also measured trematode infection rates in kidneys of recently metamorphosed Lithobates pipiens collected from nine wetlands in 2003 and 2004. We detected all possible amphibian species in each study area. The amount of nearby row crops was limited in importance as a covariate for estimating site occupancy. We observed deformities in <5% of metamorphs sampled and proportions were not associated with triazine concentrations. Trematode infections were high in metamorphs from all sites we sampled, but not associated with site triazine concentrations, except perhaps for a subset of sites sampled in both years. We detected triazines more often and in higher concentrations in breeding wetlands closer to corn production. Triazine concentrations increased in floodplain wetlands as water levels rose after rainfall and were similar among lotic and lentic sites. Overall, our results suggest amphibian populations were not faring differently among these four conservation areas, regardless of their proximity to corn production, and that the ecological dynamics of atrazine exposure were complex.     

Wetlands classification for amphibian conservation in Mediterranean landscapes

Habitat fragmentation and alteration have been described as the major factors relating to the decline observed in several amphibian species. In Spain, these processes are mainly associated with the large agricultural land area, the widespread use of toxic substances, and the agricultural practices used. All these aggressions affect wetlands and their watersheds, which are essential aquatic systems for many amphibian species. In an effort to discover where conservation and specific action plans could be more necessary, this study relates the amphibian richness in 28 representative Mediterranean wetlands to their characteristics and the activities carried out on their watershed. The required information considers diverse wetland variables. Our results show that watershed habitat heterogeneity is significantly positively correlated with amphibian richness, while the percentage of the watershed area devoted to olive cultivation is negatively correlated with it. The results allow us to classify wetlands according to their importance for amphibian conservation. Our results also show that 80% of the studied wetlands need specific action plans. Especially, more sustainable cultivation methods are required considering drastic changes in current agricultural practices. Finally, our data provides a baseline to understand future alterations due to agricultural practices.     

Low ecological representation in the protected area network of China

Protected areas are considered as an essential strategy to halt the decline of biodiversity. Ecological representation in protected areas is crucial for assessment on the progress toward conservation targets. Although China has established a large number of protected areas since the 1950s, ecological representation of protected areas is poorly understood. Here, we performed the complementarity analysis to evaluate ecological representation of protected areas in China. We used a database of the geographical distribution for 10,396 woody plant species, 2,305 fern species, 406 amphibian species, 460 reptile species, 1,364 bird species, and 590 mammal species from 2,376 counties across China. We identified complementary sets of counties for all species or threatened species of plant and vertebrate species using a complementarity algorithm. We evaluated ecological representation of 3,627 protected areas and discerned conservation gaps by comparing the distribution of protected areas with complementary sets. The results show that the spatially representative and complementary sites for biodiversity are poorly covered, and a fairly large proportion of protected areas is not designed to efficiently represent biodiversity at the national scale. Our methodology can serve as a generic framework for assessment on ecological representation of protected areas at the national scale.     

Putting beta-diversity on the map: broad-scale congruence and coincidence in the extremes

Beta-diversity, the change in species composition between places, is a critical but poorly understood component of biological diversity. Patterns of beta-diversity provide information central to many ecological and evolutionary questions, as well as to conservation planning. Yet beta-diversity is rarely studied across large extents, and the degree of similarity of patterns among taxa at such scales remains untested. To our knowledge, this is the first broad-scale analysis of cross-taxon congruence in beta-diversity, and introduces a new method to map beta-diversity continuously across regions. Congruence between amphibian, bird, and mammal beta-diversity in the Western Hemisphere varies with both geographic location and spatial extent. We demonstrate that areas of high beta-diversity for the three taxa largely coincide, but areas of low beta-diversity exhibit little overlap. These findings suggest that similar processes lead to high levels of differentiation in amphibian, bird, and mammal assemblages, while the ecological and biogeographic factors influencing homogeneity in vertebrate assemblages vary. Knowledge of beta-diversity congruence can help formulate hypotheses about the mechanisms governing regional diversity patterns and should inform conservation, especially as threat from global climate change increases.     

The chytrid fungus Batrachochytrium dendrobatidis is non-randomly distributed across amphibian breeding habitats

The chytrid fungus Batrachochytrium dendrobatidis has been implicated as the causative agent of mass mortalities, population declines, and the extinctions of stream-breeding amphibian species worldwide. While the factors that limit the distribution and abundance of B. dendrobatidis across large geographical regions are fairly well understood, little is known about the distribution of the fungus within localized areas such as individual catchments. The accurate identification of amphibian populations likely to be exposed to the fungus is urgently required for effective disease management. We conducted disease surveys of frogs representing five ecological guilds in south-east Queensland, Australia, and hypothesized that if B. dendrobatidis were responsible for the disappearance of stream-breeding amphibian populations, infection prevalence and intensity would be greatest in frogs breeding in permanent, flowing water. Overall, 30.3% of the 519 frogs we sampled were infected with B. dendrobatidis . However, infections were not evenly distributed across the ecological guilds, being almost completely restricted to frogs breeding at permanent waterbodies. Of these, stream breeders were significantly more likely to be infected than were pond breeders, though the intensity of frogs' infections did not differ significantly between the two guilds. Batrachochytrium dendrobatidis was detected on only one of the 117 frogs that were found at ephemeral ponds, ephemeral streams, or terrestrial sites. These findings provide strong support for the hypothesis that B. dendrobatidis was responsible for many of the unexplained disappearances of stream-breeding amphibian populations in recent decades, and will enable wildlife managers to more accurately focus conservation efforts on those species at highest risk of disease-related decline.     

Ecological correlates of species richness and population abundance patterns in the amphibian communities from the Albertine Rift, East Africa

Broad-scale ecological correlates affecting species richness and abundance patterns of amphibians were studied in 37 sampling sites from 15 independent protected areas in the Albertine Rift, East Africa. Amphibians were caught by a combination of sampling techniques, including time-constrained visual searching, pitfalls with drift fences, dip-netting, and opportunistic observations. In total, 73 species of amphibians were recorded, some of them occurring only once in the samples and some more than 1,000 times. Once relative field effort at each study site was taken into account, multivariate regression analyses showed that amphibian species richness was positively influenced by percent canopy cover and altitude. On the other hand, population abundance was influenced by a combination of three different variables: positively by percent canopy cover and rainfall, and negatively by human activities. The rainforest proved to play a very important role in the ecological distribution of species, with about 63% of the species being in one way or the other linked to it either as forest specialists, inhabitants of forest ecotones, or inhabitants of both forests and forest ecotones. These results have wide conservation implications. Indeed, as the mature rainforest habitat (especially at mid altitude-highland) proved to be the key habitat for the amphibian communities of the Albertine Rift, it should be a priority to recommend an accurate management and conservation of mature forests in local and regional protection programs.     

Phylogeography and the conservation of coral reef fishes

Here we present a review of how the study of the geographic distribution of genetic lineages (phylogeography) has helped identify management units, evolutionary significant units, cryptic species, and areas of endemism, and how this information can help efforts to achieve effective conservation of coral reefs. These studies have confirmed the major biogeographic barriers that were originally identified by tropical species distributions. Ancient separations, identified primarily with mtDNA sequence comparisons, became apparent between populations on each side of the barriers. The general lack of correlation between pelagic larval duration and genetic connectivity across barriers indicates that life history and ecology can be as influential as oceanography and geography in shaping evolutionary partitions within ocean basins. Hence, conservation strategies require a recognition of ecological hotspots, those areas where habitat heterogeneity promotes speciation, in addition to more traditional approaches based on biogeography. Finally, the emerging field of genomics will add a new dimension to phylogeography, allowing the study of genes that are pertinent to recent and ongoing differentiation, and ultimately providing higher resolution to detect evolutionary significant units that have diverged in an ecological time scale.     

Differentiating Migration and Dispersal Processes for Pond-Breeding Amphibians

Abstract Understanding the movement of animals is critical to many aspects of conservation such as spread of emerging disease, proliferation of invasive species, changes in land-use patterns, and responses to global climate change. Movement processes are especially important for amphibian management and conservation as species declines and extinctions worldwide become ever more apparent. To better integrate behavioral and ecological data on amphibian movements with our use of spatially explicit demographic models and guide effective conservation solutions, I present 1) a synopsis of the literature regarding behavior, ecology, and evolution of movement in pond-breeding amphibians possessing biphasic life cycles to distinguish between migration and dispersal processes, 2) a working hypothesis of juvenile-based dispersal, and 3) a discussion of conservation issues that follow from distinguishing the spatial and temporal movements of amphibians at different scales. I define amphibian migration as intrapopulational, round-trip movements toward and away from aquatic breeding sites. Population-level management, in general, can be focused on spatial scales of <1.0 km with attention focused on adult population and juveniles that remain near the natal wetland. I define amphibian dispersal as interpopulational, unidirectional movements from natal sites to other breeding sites. Metapopulation- or landscape-level management can be focused on movements among populations at spatial scales >1.0–10.0 km and on importance of terrestrial connectivity. The ultimate goal of conservation for amphibians should be long-term regional persistence by addressing management issues at both local and metapopulation scales.     

Impending conservation crisis for Southeast Asian amphibians

With an understudied amphibian fauna, the highest deforestation rate on the planet and high harvesting pressures, Southeast Asian amphibians are facing a conservation crisis. Owing to the overriding threat of habitat loss, the most critical conservation action required is the identification and strict protection of habitat assessed as having high amphibian species diversity and/or representing distinctive regional amphibian faunas. Long-term population monitoring, enhanced survey efforts, collection of basic biological and ecological information, continued taxonomic research and evaluation of the impact of commercial trade for food, medicine and pets are also needed. Strong involvement of regional stakeholders, students and professionals is essential to accomplish these actions.     

Clade‐specific consequences of climate change to amphibians in Atlantic Forest protected areas

The rapid global decline of amphibian population is alarming because many occur for apparently unknown or enigmatic reasons, even inside protected areas (PAs). Some studies have predicted the effects of climate change on amphibians’ distribution and extinction, but the relationship and consequences of climate change to the phylogenetic structure of amphibian assemblages remain obscure. By applying robust techniques for ecological niche modeling and a cutting‐edge approach on community phylogenetics, here, we evaluate how climate change affects the geographical pattern of amphibian species richness and phylogenetic diversity in the Atlantic Forest Biodiversity Hotspot, Brazil, as well as how the phylogenetic composition of amphibian assemblages respond to climate change. We found that most species contracted their ranges and that such responses are clade specific. Basal amphibian clades (e.g. Gymnophiona and Pipidae) were positively affected by climate change, whereas late‐divergent clades (e.g. Cycloramphidae, Centrolenidae, Eleutherodactylidae, Microhylidae) were severely impacted. Identifying major changes in the phylogenetic pool represents a first step towards a better understanding of how assembly processes related to climate change will affect ecological communities. A deep analysis of the impacts of climate change not only on species, but also on the evolutionary relationships among species might foster the discussion on clade‐level conservation priorities for this imperiled fauna.     

A review of the role of parasites in the ecology of reptiles and amphibians

A great diversity of parasites, from viruses and bacteria to a range of remarkable eukaryotic organisms, exploit reptile and amphibian hosts. Recent increases in the emergence of infectious disease have revealed the importance of understanding the effects of interactions between hosts and their parasites. Here we review the effects of parasite infection on a range of demographic, behavioural, genomic and physiological factors in reptile and amphibian species. Reviewing these parasite roles collectively, and prioritising areas for research, advances our ecological understanding and guides direction for conservation in a time of rapid species decline. Poorly resolved systems include Gymnophionan amphibians and Crocodilian hosts, in addition to viral and bacterial parasites. Future research should seek to understand processes enabling population recovery and examining synergistic interactions of parasites with fragmentation, climate change and other processes that threaten species persistence.     

The Effects of Governmental Protected Areas and Social Initiatives for Land Protection on the Conservation of Mexican Amphibians

Traditionally, biodiversity conservation gap analyses have been focused on governmental protected areas (PAs). However, an increasing number of social initiatives in conservation (SICs) are promoting a new perspective for analysis. SICs include all of the efforts that society implements to conserve biodiversity, such as land protection, from private reserves to community zoning plans some of which have generated community-protected areas. This is the first attempt to analyze the status of conservation in Latin America when some of these social initiatives are included. The analyses were focused on amphibians because they are one of the most threatened groups worldwide. Mexico is not an exception, where more than 60% of its amphibians are endemic. We used a niche model approach to map the potential and real geographical distribution (extracting the transformed areas) of the endemic amphibians. Based on remnant distribution, all the species have suffered some degree of loss, but 36 species have lost more than 50% of their potential distribution. For 50 micro-endemic species we could not model their potential distribution range due to the small number of records per species, therefore the analyses were performed using these records directly. We then evaluated the efficiency of the existing set of governmental protected areas and established the contribution of social initiatives (private and community) for land protection for amphibian conservation. We found that most of the species have some proportion of their potential ecological niche distribution protected, but 20% are not protected at all within governmental PAs. 73% of endemic and 26% of micro-endemic amphibians are represented within SICs. However, 30 micro-endemic species are not represented within either governmental PAs or SICs. This study shows how the role of land conservation through social initiatives is therefore becoming a crucial element for an important number of species not protected by governmental PAs.     

Ecological and biodiversity gradients across alpine dry grassland habitats: implications for an endangered species

Dry grasslands are of great interest for nature conservation in Europe, because they have a central role in the conservation of numerous rare and endangered species. In this study carried out in the Brenta mountain group (Italian alps), we investigated the effect of environmental factors mainly controlled by topography, on the biodiversity trends across different dry grassland habitats where the threatened alpine stenoendemic Erysimum aurantiacum grows. Plant community data and ecological factors were analysed by means of a multi‐habitat CCA approach and by analysis of biodiversity gradients in 7 natural and semi‐natural habitats. We found that species turnover and biodiversity patterns vary as a function of multi‐factorial ecological gradients. For the single habitats, elevation gradient was the main factor explaining compositional variation, followed by inclination and proportion of exposed rock surface. Despite its endangered status, E. aurantiacum showed a relatively high degree of ecological plasticity across these semiarid grassland habitats that probably allows it to survive in different environments, including in some cases those impacted by human activities. This prompts for habitat‐ more than species‐level conservation actions. According to their characteristics and threats, habitat‐specific management practices are recommended for long term conservation of plant species communities in the different ecological niches.     

Breeding site characteristics regulating life history traits of the brown tree frog, Litoria ewingii

Past research has determined the habitat requirements of amphibian species predominantly from presence/absence studies. This study tested the hypothesis that relationships between breeding site habitat components, life history traits and fitness may provide a higher resolution of biological data relating to the habitat requirements of amphibian species. We tested this novel approach by using Litoria ewingii as our model species. We correlated larval and metamorph life history traits with habitat variables at 28 small to medium sized ponds within a commercially logged forest in southern Tasmania, Australia. To avoid larval mortality due to pond desiccation, L. ewingii laid eggs and metamorphosed earlier in smaller ponds. Snout vent length at metamorphosis increased with elevation and metamorphosis was earlier in less shaded ponds. Breeding ponds that maximised the fitness of L. ewingii were higher elevation ponds with reduced shading, steeper bank slopes and reduced pond isolation. The findings of the study equip land managers with a greater ecological understanding of ecosystem function in relation to specific species. The methodological approach has broad application to conservation biology where an awareness of the specific habitat requirements of amphibians is critical to successful ecosystem management.     

Biodiversity hotspots are not congruent with conservation areas in the Gulf of California

As marine systems are threatened by increasing human impacts, mechanisms to maintain biodiversity and ecosystem functions and services are needed. Protecting areas of conservation importance may serve as a proxy for maintaining these functions, while also facilitating efficient use and management of limited resources. Biodiversity hotspots have been used as surrogates for spatial conservation importance; however, as many protected areas have been established opportunistically and under differing criteria, it is unclear how well they actually protect hotspots. We evaluated how well the current protected area network and priority areas selected through previous systematic conservation planning exercises preserve biodiversity hotspots in the Gulf of California, Mexico. We also determined spatial congruence between biodiversity hotspots based on different criteria, which may determine their ability to be used as surrogates for each other. We focus on the Gulf of California because it is a megadiverse system where limited information regarding species diversity and distribution has constrained development of strategies for conservation and management. We developed a species occurrence database and identified biodiversity hotspots using four different criteria: species richness, rarity, endemism, and threatened species. We interpolated species occurrence, while accounting for heterogeneous sampling efforts. We then assessed overlap of hotspots with existing protected areas and priority areas, and between hotspots derived by distinct criteria. We gathered 286,533 occurrence records belonging to 12,105 unique species, including 6388 species identified as rare, 642 as endemic, and 386 as threatened. We found that biodiversity hotspots showed little spatial overlap with areas currently under protection and previously identified priority areas. Our results highlight the importance of distinct spatial areas of biodiversity and suggest that different ecological mechanisms sustain different aspects of diversity and multiple criteria should be used when defining conservation areas.     

Using a goal programming approach to design and evaluate protected areas for the conservation of multiple dimensions of biodiversity

The decline and loss of biodiversity provoked by human activities have caused ecologists and conservationists to center their attention on the design of conservation priority areas (PAs), focusing mainly on species conservation in terms of richness, rarity and/or vulnerability. However, biodiversity has multiple dimensions, evolutionary processes have recently been labeled the ‘missing component’ of conservation strategies, and increasingly more authors are suggesting that the ecological, evolutionary and historical aspects of biodiversity are key components of conservation planning. In this study we develop a prioritization system to design conservation PAs using the wild terrestrial mammals of the Iberian Peninsula as an example. We aim to contribute to the design of more suitable PAs by integrating ecological components of biodiversity (species richness, vulnerability and rarity), evolutionary aspects (accumulated genetic diversification) and historical information relevant to the study area. After selecting a set of biodiversity indicators, we applied a multi-objective technique (extended goal programming) to construct a combined index, where values in the top 90th percentile were then used to select the PAs. According to our most efficient and satisfactory results, some areas highlighted for their conservation are currently categorized as PAs, however, we found that it would be necessary to reconsider their extent, especially in northern Spain, where the historical aspects of biodiversity (the missing component) are more widely present. The need to determine PAs is unquestionable. However, it should also be a priority to move towards a model of sustainable and fair development.     

Where are the survivors? Tracking relictual populations of endangered frogs in Costa Rica

Aim We used abiotic environmental variables and historical locality records to infer distributions of endangered anuran species of Costa Rica to promote efficient strategies for future amphibian surveys. Location Costa Rica. Methods We used a Maximum Entropy Algorithm (Maxent) to predict potential distribution maps for 17 species of endangered anurans and create a consensus map of species richness. We compared the environmental conditions from localities where relictual amphibian populations were recently rediscovered with the conditions across their historical range to evaluate the possibility that these relictual populations might occur in specific climatic conditions that could explain their persistence. We used a multicriteria analysis considering the following factors: the intersection zones between the consensus map, conservation areas, potential Batrachochytrium dendrobatidis (Bd) distribution, collecting effort and areas within the precipitation range at which reappearances had occurred to locate sites for future surveys. Results The resulting predictions suggest that suitable areas for the highest number of species occur between 1300 and 2500 m.a.s.l and are concentrated along the Pacific slopes of the Cordillera de Talamanca and Cordillera Volcánica Central. Around 45% of the high potential richness area is under protection. Relictual populations of declined species seem to persist mainly in highly humid localities (2500–3500 mm of mean annual precipitation). Around 240 km² has an ideal environment for the rediscovery of relictual populations. The multicriteria analysis showed that around 0.5% of the Costa Rican territory should be surveyed exhaustively for frogs. Main conclusions Many of the potential refugia we identified here have not been surveyed since 2000, the areas identified by the best model predictions correspond well with the localities of the relictual populations recently reported. We suggest future surveys of missing amphibian species should focus on these areas. The discovery of populations of endangered species can be used to propose conservation areas.