Multiple-stressor effects on stream invertebrates: DNA barcoding reveals contrasting responses of cryptic mayfly species

Most freshwater ecosystems are subject to multiple anthropogenic stressors, which commonly reduce biodiversity across all levels. Existing freshwater bioassessment programmes aim at identifying responses of aquatic biota to stressors. For practical reasons, higher-level taxonomic groups (e.g. genus or family) are often used in these programmes. This approach, however, may bias assessment results as different species can differ substantially in their biological traits, thus emphasising the need for species-level data. DNA barcoding can reliably generate species-level data for animals by sequencing a fragment of the mitochondrial cytochrome c oxidase subunit I gene (COI). This allows investigating species-specific responses to environmental stressors. In this study, we sampled 43 stream sites in southern New Zealand spanning wide gradients of agricultural stressors (fine sediment and nutrient levels). We first used conventional morphological assessment to determine stream invertebrate responses to the stressors, focusing on two important indicator taxa, the mayfly Deleatidium and the snail Potamopyrgus. We then tested for the presence of cryptic species in Deleatidium and Potamopyrgus using DNA barcoding of the COI gene for 520 and 305 specimens, respectively. While all Potamopyrgus specimens belonged to a single species, Deleatidium consisted of 12 distinct molecularly identified clades that likely represent distinct species. Finally, we compared stressor responses assessed at genus and species level. While overall Deleatidium abundance was unrelated to stressor levels, some of the individual clades differed clearly in the magnitude and direction of their responses to nutrient and sediment stress. While the most abundant cryptic Deleatidium clade (clade 1) showed no relationship to sediment or nutrient levels, clades 2 and 3 responded negatively to nutrient or sediment increases, respectively. These contrasting patterns indicate that individual freshwater invertebrate species, often merged to a higher taxonomic level for biomonitoring purposes, can differ substantially in their tolerance to stressors and respond in more complex ways than observed at genus level. Overall, our results highlight the considerable potential and importance of including DNA barcoding into freshwater ecosystem assessment and biomonitoring programmes.     

Ability of phytoplankton trait sensitivity to highlight anthropogenic pressures in Mediterranean lagoons: A size spectra sensitivity index (ISS-phyto)

Size spectra exhibit common patterns of variation and predictable responses to pressures across ecosystem types, functional guilds and taxonomic groups. Here, we extend the size spectra approach to phytoplankton ecological status assessment in transitional waters by developing, testing and validating a multi-metric index of size spectra sensitivity (ISS-phyto), which integrates size structure metrics with others such as phytoplankton diversity, biomass and sensitivity of size classes to anthropogenic disturbance. The ability of various theoretical models of size spectra sensitivity to discriminate between disturbed and undisturbed ecosystems and levels of anthropogenic stress was evaluated. We used data on phytoplankton samples collected in 14 Mediterranean and Black sea transitional water ecosystems (coastal lagoons) from Italy, Albania, Greece, Bulgaria and Romania, and compared the models’ efficiency by looking at their pressure–impact response along salinity and enrichment gradients, the latter quantified as variations in dissolved inorganic nitrogen (DIN) and dissolved inorganic phosphorus (DIP). Data from a fifteenth Mediterranean lagoon was used for external validation purposes. Right asymmetric models of size class sensitivity, implying higher sensitivity of smaller cell size classes, were found to contribute to the ISS-phyto multimetric tool more effectively than symmetric and left asymmetric models, distinguishing disturbed from undisturbed lagoons and disturbed from undisturbed stations within the same lagoon. When based on right asymmetric sensitivity models, i.e., those that were most efficient in identifying anthropogenic impacts, ISS-phyto also showed the best fit of pressure–response relationships along the salinity and enrichment gradients; at low to high levels of impact ISS response was driven by size class sensitivity and at very high impacts by phytoplankton biomass. A scheme for the classification of Ecological Quality Status based on ISS-phyto is proposed and validated. The validation procedure found that ISS-phyto is an effective and sensitive monitoring tool, robust, easy to apply and to inter-calibrate among laboratories.     

Application of a new multi-metric phytoplankton index to the assessment of ecological status in marine and transitional waters

Patterns of phytoplankton size spectra variation with gradients of environmental stress have been observed in freshwater, transitional waters and marine ecosystems, driving the development of size spectra based assessment tools.In this study, we have tested on transitional and coastal waters a new Index of Size spectra Sensitivity of Phytoplankton (ISS-Phyto), which integrates simple size spectra metrics, size class sensitivity to anthropogenic disturbance, phytoplankton biomass (chlorophyll a) and taxonomic richness thresholds. ISS-Phyto has been tested both among and within ecosystems along pressure gradients based on expert view assessment; the adequacy of symmetric and both left and right asymmetric models of phytoplankton size class sensitivity have been compared.The results showed that ISS-Phyto consistently discriminated between anthropogenic and natural disturbance conditions. Left asymmetric models of size spectra sensitivity, assuming greater disturbance tolerance with respect to eutrophication and organic enrichment of increasingly large size classes, showed the best fit comparing all ecosystems; in three of the four considered ecosystems (Varna, Helsinki, Mompás-Pasaia), they seemed to discriminate best between different levels of disturbance also within ecosystems. Moreover, they demonstrated significant and inverse patterns of variation along the overall pressure gradient as well as along the inorganic phosphorus (DIP), chlorophyll a and trophic index (TRIX) gradients.Therefore, ISS-Phyto, originally developed for transitional waters, seems to be an adequate assessment tool of ecological status also in coastal marine waters; moreover, it seems adequate to describe within ecosystem disturbance gradients. Hence, ISS-Phyto helps to understand the relationships between anthropogenic impact and ecosystem response from the individual point of view, with reference to the simple parameter of body size.     

Phylogeography,historical demography and habitat suitability modelling of freshwater fishes inhabiting seasonally fluctuating Mediterranean river systems: a case study using the Iberian cyprinid Squalius valentinus

The Mediterranean freshwater fish fauna has evolved under constraints imposed by the seasonal weather/hydrological patterns that define the Mediterranean climate. These conditions have influenced the genetic and demographic structure of aquatic communities since their origins in the Mid‐Pliocene. Freshwater species in Mediterranean‐type climates will likely constitute genetically well‐differentiated populations, to varying extents depending on basin size, as a consequence of fragmentation resulting from drought/flood cycles. We developed an integrative framework to study the spatial patterns in genetic diversity, demographic trends, habitat suitability modelling and landscape genetics, to evaluate the evolutionary response of Mediterranean‐type freshwater fish to seasonal fluctuations in weather. To test this evolutionary response, the model species used was Squalius valentinus, an endemic cyprinid of the Spanish Levantine area, where seasonal weather fluctuations are extreme, although our findings may be extrapolated to other Mediterranean‐type species. Our results underscore the significant role of the Mediterranean climate, along with Pleistocene glaciations, in diversification of S. valentinus. We found higher nuclear diversity in larger drainage basins, but higher mitochondrial diversity correlated to habitat suitability rather than basin size. We also found strong correlation between genetic structure and climatic factors associated with Mediterranean seasonality. Demographic and migration analyses suggested population expansion during glacial periods that also contributed to the current genetic structure of S. valentinus populations. The inferred models support the significant contribution of precipitation and temperature to S. valentinus habitat suitability and allow recognizing areas of habitat stability. We highlight the importance of stable habitat conditions, fostered by typical karstic springs found on the Mediterranean littoral coasts, for the preservation of freshwater species inhabiting seasonally fluctuating river systems.     

Landscape Genetics of Leaf-Toed Geckos in the Tropical Dry Forest of Northern Mexico

Habitat fragmentation due to both natural and anthropogenic forces continues to threaten the evolution and maintenance of biological diversity. This is of particular concern in tropical regions that are experiencing elevated rates of habitat loss. Although less well-studied than tropical rain forests, tropical dry forests (TDF) contain an enormous diversity of species and continue to be threatened by anthropogenic activities including grazing and agriculture. However, little is known about the processes that shape genetic connectivity in species inhabiting TDF ecosystems. We adopt a landscape genetic approach to understanding functional connectivity for leaf-toed geckos (Phyllodactylus tuberculosus) at multiple sites near the northernmost limit of this ecosystem at Alamos, Sonora, Mexico. Traditional analyses of population genetics are combined with multivariate GIS-based landscape analyses to test hypotheses on the potential drivers of spatial genetic variation. Moderate levels of within-population diversity and substantial levels of population differentiation are revealed by F _ST and D _est. Analyses using structure suggest the occurrence of from 2 to 9 genetic clusters depending on the model used. Landscape genetic analysis suggests that forest cover, stream connectivity, undisturbed habitat, slope, and minimum temperature of the coldest period explain more genetic variation than do simple Euclidean distances. Additional landscape genetic studies throughout TDF habitat are required to understand species-specific responses to landscape and climate change and to identify common drivers. We urge researchers interested in using multivariate distance methods to test for, and report, significant correlations among predictor matrices that can impact results, particularly when adopting least-cost path approaches. Further investigation into the use of information theoretic approaches for model selection is also warranted.     

Incorporating natural variability in the bioassessment of stream condition in the Atlantic Forest biome,Brazil

Most bioassessment programs in Brazil face difficulties when scaling up from small spatial scales because larger scales usually encompass great environmental variability. Covariance of anthropogenic pressures with natural environmental gradients can be a confounding factor in the evaluation of biologic responses to anthropogenic pressures. The objective of this study was to develop a multimetric index (MMI) with macroinvertebrates for two stream types and two ecoregions in the Atlantic Forest biome in Rio de Janeiro state, Brazil. We hypothesized that by using two approaches – (1) testing and adjusting metrics to landscape parameters, and (2) selecting metrics using a cluster analysis to avoid metrics redundancy – the final MMI would perform better than the traditional approach (unadjusted metrics, one metric representing each category). Four MMIs were thus developed: MMI-1 – adjusted MMI with metrics selected after cluster analysis); MMI-2 – adjusted MMI with one metric from each category; MMI-3 – unadjusted MMI with metrics selected after cluster analysis; MMI-4 – unadjusted MMI with one metric from each category. We used three decision criteria to assess MMI’s performance: precision, responsiveness and sensitivity. In addition, we tested the MMI’s by using an independent set of sites to validate the results. Although all MMIs performed well in the three criteria, adjusting metrics to natural variation increased MMI response and sensitivity to impairment. In addition, the selected MMI-2 was able to classify sites of two stream types and two ecoregions. The use of cluster analysis, however, did not avoid high redundancy between metrics of different branches. The MMI-4 had the poorest performance among all tested MMIs and it was not able to distinguish adequately reference and impaired sites from both ecoregions. We present some considerations on the use of metrics and on the development of MMI’s in Brazil and elsewhere.     

Responses of taxonomic distinctness and species diversity indices to anthropogenic impacts and natural environmental gradients in stream macroinvertebrates

1. Many studies have shown traditional species diversity indices to perform poorly in discriminating anthropogenic influences on biodiversity. By contrast, in marine systems, taxonomic distinctness indices that take into account the taxonomic relatedness of species have been shown to discriminate anthropogenic effects. However, few studies have examined the performance of taxonomic distinctness indices in freshwater systems. 2. We studied the performance of four species diversity indices and four taxonomic distinctness indices for detecting anthropogenic effects on stream macroinvertebrate assemblages. Further, we examined the effects of catchment type and area, as well as two variables (pH and total phosphorus) potentially describing anthropogenic perturbation on biodiversity. 3. We found no indications of degraded biodiversity at the putatively disturbed sites. However, species density, rarefied species richness, Shannon's diversity and taxonomic diversity showed higher index values in streams draining mineral as opposed to peatland catchments. 4. Of the major environmental gradients analysed, biodiversity indices showed the strongest relationships with catchment area, lending further support to the importance of stream size for macroinvertebrate biodiversity. Some of the indices also showed weak linear and quadratic relationships to pH and total phosphorus, and residuals from the biodiversity index‐catchment area regressions (i.e. area effect standardized) were more weakly related to pH and total phosphorus than the original index values. 5. There are a number of reasons why the biodiversity indices did not respond to anthropogenic perturbation. First, some natural environmental gradients may mask the effects of perturbation on biodiversity. Secondly, perturbations of riverine ecosystems in our study area may not be strong enough to cause drastic changes in biodiversity. Thirdly, multiple anthropogenic stressors may either increase or decrease biodiversity, and thus the coarse division of sites into reference and altered streams may be an oversimplification. 6. Although neither species diversity nor taxonomic distinctness indices revealed anthropogenic degradation of macroinvertebrate assemblages in this study, the traditional species diversity and taxonomic distinctness indices were very weakly correlated. Therefore, we urge that biodiversity assessment and conservation planning should utilize a number of different indices, as they may provide complementary information about biotic assemblages.     

Spatiotemporal changes in diatom ecological profiles: implications for biomonitoring

Diatom indices developed in certain geographic regions are frequently used elsewhere, despite the strong evidence that such metrics are less useful when applied in regions other than that where species–environment relationships were originally assessed, showing that species have particular autoecological requirements in different geographic areas. In this study, we define the ecological profiles for selected environmental variables in three common epilithic diatom species in the Duero Basin (NW Spain), comparing our results with data gathered from different geographic regions. We assess differences in autoecological parameters obtained from the northern and southern subbasins, and from different years, in order to observe whether significant small-scale, spatiotemporal changes exist. Our results show that there are variations in species’ autoecological parameters between different regions. Furthermore, there are significant changes comparing northern and southern Duero subbasins for certain species and physiochemical variables. Additionally, different autoecologies have been observed for certain diatoms and environmental factors comparing two different years. It can be concluded that freshwater diatom autoecologies can vary between different geographic areas. This implies that, in order to improve water-quality bioassessments, autoecology-based diatom metrics should be developed by quantifying species distributions along environmental gradients, using datasets representative of the areas or river types where the metrics will be applied.     

Mechanisms maintaining biodiversity in Mediterranean pine-oak forests: insights from a spatial simulation model

Recurrent anthropogenic and natural perturbations, resource limitations and heterogeneous environments contribute to the maintenance of a remarkable biodiversity in Mediterranean plant communities. Yet, the essential mechanisms of community assembly in these systems remain largely unexplored. In the current paper we investigate the coexistence of Aleppo pine (Pinus halepensis Mill.) and Holm oak (Quercus ilex L.), two of the most widely distributed species in the Iberian Peninsula, in relation to gradients in water availability and disturbance. A spatial model of landscape forest dynamics was implemented, calibrated with experimental data, with stands arranged on a heterogeneous lattice and coupled by dispersal. It was found that pine population persistence in the landscape can be explained independently by a competition-colonization tradeoff (in mesic homogeneous environments) and by a tradeoff between shade and drought tolerance (in heterogeneous low disturbed environments). Both mechanisms reinforce mutually to maintain a shifting mosaic of both taxa along disturbance and aridity gradients. This view is consistent with palynological, historical and forest inventory records. In turn, equilibrium theories of vegetation dynamics (phytosociological), that neglect the role of heterogeneity and disturbances may be inadequate for Mediterranean forests, and have been shown to result in mismanagement practices. We claim that biologically informed models of forest dynamics are desperately needed as diagnosis tools for sustainable forest management.     

Divergent reaction of fish metrics to human pressures in fish assemblage types in Europe

Using a large pan-European dataset, we compared least disturbed sites to sites impacted by human pressures across broad river types to assess which aspects of bio-ecological traits of the fish assemblage are most sensitive to alterations of the river ecosystem. To control for variation across river types and large-scale environmental gradients, we began by clustering the least disturbed sites (n = 716) into four homogenous fish assemblage types (FATs) differing by four fish metrics, i.e., lithophilic, rheophilic, omnivorous, and potamodromous fish. We predicted these FATs (headwater streams, medium gradient rivers, lowland rivers, and Mediterranean streams) using environmental variables, i.e., altitude, river slope, temperature, precipitation, latitude, and longitude for impacted sites in our dataset (n = 2,389). Using tests of sensitivity and intensity, 17 fish metrics showed a clear reaction to human pressures. However, 12 metrics responded exclusively within only one of the four FATs. Hence we observed a divergent reaction of fish metrics to human pressures in, e.g., headwater versus lowland rivers. Type-specific reactions are useful in customizing impact assessment for particular river types. It is of primary importance to understand the comparative sensitivity and efficiency of fish-based indicators of water quality for detecting human-induced degradation of river ecosystems.     

Sensitivity of correlation structure of class- and landscape-level metrics in three diverse regions

Sensitivity of landscape metrics to selection of spatial scale (i.e., resolution or areal extent), land-use categories, and different landscapes has led to unreliable conclusions for practitioners of landscape analysis and modeling. Unlike previous studies that mostly considered such metrics and assessed the effect of each factor separately, our study focuses on the sensitivity of the correlation structure of different sets of landscape metrics as a whole under different situations via principal component analysis (PCA). We used the congruence coefficient (r_c) to calculate the changes in factor structures under different situations. We used 16 class-level and 15 landscape-level metrics of 900 village-based and 150 town-based samples that were collected from three regions. Five cell sizes, two land-use classes, and two sets of land-use metrics were also considered. We did not control the cell sizes, sample extent, and different landscapes in the sensitivity analysis to study the interactive relationships between different factors. All factors strongly influence the correlation structure of the landscape metrics, with each factor demonstrating a unique influence. Changing cell size significantly affects the correlation structures in the plain region, especially in croplands and built-up lands. Town-based results show a relatively more stable correlation structure than village-based results (except in land-use categories). Different land-use classes show different responses to changing cell size, sample extent, and sets of landscape metrics in different regions. These results show the great interactive influences of these factors, which have often been overlooked in previous studies. The conclusions drawn from fixed factors may be conditional and inapplicable to other situations. The sensitivity of the correlation structure in diverse regions may improve our understanding of landscape metrics as a whole and can provide further insights into the correlation structure of landscape metrics for land-use management and monitoring.     

Freshwater ecosystem structure–function relationships: from theory to application

1. In this issue we aimed to answer the questions: (i) under what circumstances are functional variables better than structural ones for assessing ecosystem health? and (ii) are there good indicators of change in ecological functioning along perturbation gradients?
2. Of the numerous functional indicators tested in this issue, several show a response to anthropogenic stress and could be included in assessments of ecosystem health and integrity in running waters.
3. In three of eight studies, function showed a stronger response to anthropogenic stress than structure, whereas one study showed a response in structure and not function, and four studies showed responses in both structure and function. Thus structure alone could not detect all types of impairment and functional aspects should also be included and further developed for assessing running-water ecosystem health and integrity. Functional variables may be especially useful in situations where there is a stronger response among organisms not usually included in stream assessment (e.g. fungi and bacteria) than the commonly used invertebrate, macrophytes and fish indicators.
4. Leading research questions related to the use of functional indicators in running waters include: (i) how large is natural and operator-induced variation for functional indicators? (ii) how small of an effect size (delta) can be detected using structural versus functional indicators? and (iii) how do we efficiently improve theories as well as predictive ability for functional measures to assess the effects of anthropogenic stressors?
5. To advance the use of functional indicators in applied running-water studies, we need to supplement the approach of using large-scale datasets and correlation with ecosystem manipulations.     

Cymodocea nodosa metrics as bioindicators of anthropogenic stress in N. Aegean,Greek coastal waters

Anthropogenic derived stressors are known to affect seagrasses. Cymodocea nodosa, a widespread seagrass in the Mediterranean Sea with high phenotypic plasticity, is known to acclimatize rapidly to prevailing environmental conditions. To use this species in the biomonitoring of anthropogenic stress, physiological (effective quantum yield of photosystem II [ΔF/Fm′], maximum quantum yield [Fv/Fm], and maximum fluorescence [Fm]), phenological (leaf length and width, number of leaves per shoot), and biochemical (Chl-a, and Carbon, Nitrogen, Phosphorus contents of leaves) metrics were measured between two meadows under different levels of anthropogenic influence in the Kavala Gulf, North Aegean Sea. To reduce bias and separate seasonality from anthropogenic stress responses the physiological parameters were measured under constant laboratory conditions and a hierarchical sampling design was employed. Two well-described meadows, one pristine (Brasidas) and one under significant anthropogenic stress (Nea Karvali), were sampled on six occasions between June 2007 and March 2009 at three spatial scales ranging from hundreds of meters (area) to kilometer (site) to 10s of kilometers (meadow). Of the twelve metrics measured, N-content and Fm were the most effective at discriminating between the two C. nodosa meadows and, therefore, should be considered as promising bioindicators. Statistically significant differences were identified between the cold and hot periods for almost all metrics measured, suggesting that seasonality is a key driver of the observed responses.     

Extreme genetic structure in a small-bodied freshwater fish, the purple spotted gudgeon, Mogurnda adspersa (Eleotridae)

Freshwater fish are a group that is especially susceptible to biodiversity loss as they often exist naturally in small, fragmented populations that are vulnerable to habitat degradation, pollution and introduction of exotic species. Relatively little is known about spatial dynamics of unperturbed populations of small-bodied freshwater fish species. This study examined population genetic structure of the purple spotted gudgeon (Mogurnda adspersa, Eleotridae), a small-bodied freshwater fish that is widely distributed in eastern Australia. The species is threatened in parts of its range but is common in coastal streams of central Queensland where this study took place. Microsatellite (msat) and mitochondrial DNA (mtDNA) variation was assessed for nine sites from four stream sections in two drainage basins. Very high levels of among population structure were observed (msat F(ST) = 0.18; mtDNA Φ(ST) = 0.85) and evidence for contemporary migration among populations was rare and limited to sites within the same section of stream. Hierarchical structuring of variation was best explained by stream section rather than by drainage basin. Estimates of contemporary effective population size for each site was low (range 28 - 63, Sibship method), but compared favorably with similar estimates for other freshwater fish species, and there was no genetic evidence for inbreeding or recent population bottlenecks. In conclusion, within a stable part of its range, M adspersa exists as a series of small, demographically stable populations that are highly isolated from one another. Complimentary patterns in microsatellites and mtDNA indicate this structuring is the result of long-term processes that have developed over a remarkably small spatial scale. High population structure and limited dispersal mean that recolonisation of locally extinct populations is only likely to occur from closely situated populations within stream sections. Limited potential for recolonisation should be considered as an important factor in conservation and management of this species.     

Comparing latitudinal and upstream–downstream gradients: life history traits of invasive mosquitofish

Aim Variation of life history traits along spatial gradients is poorly understood in invasive species and particularly in freshwater fish. We aimed to examine life history variation in a highly invasive fish (Gambusia holbrooki) along latitudinal and upstream–downstream river gradients and to assess the effects of age on this variation. We hypothesized similar responses in populations inhabiting environments more favourable to this species (lower latitudes and lower reaches of rivers). Location European rivers from southern Spain to southern France. Methods We sampled mosquitofish from the lowest reaches of ten river basins along 6° of latitude in the Mediterranean region and seven sites along the upstream–downstream gradient in three of the rivers. We examined abundance, population structure, size‐at‐age and other life history traits along these gradients. Results As hypothesized, lower reaches and lower latitudes both resulted in higher reproductive effort and lower body condition of mosquitofish. However, these patterns explained low per cent variation, were nonlinear and strongly depended on fish age. Independently of fish size, age groups differed in reproductive effort, in the gonadal weight–size relationship and its variation along spatial gradients. Mean size‐at‐age (or overall body size) did not vary with latitude (so the intra‐specific version of Bergmann’s rule or its converse does not apply) and in contrast increased upstream in rivers. Main conclusions Our findings suggest that for life history traits of freshwater organisms, river longitudinal variation plays a role as important as climate, with often differential effects. Our results also illustrate the poor knowledge of spatial variation of many life history traits, which precludes the understanding and prediction of biological invasions in a rapidly changing world.     

Alkaline Phosphatase Assay for Freshwater Sediments: Application to Perturbed Sediment Systems

The p-nitrophenyl phosphate hydrolysis-phosphatase assay was modified for use in freshwater sediment. Laboratory studies indicated that the recovery of purified alkaline phosphatase activity was 100% efficient in sterile freshwater sediments when optimized incubation and sonication conditions were used. Field studies of diverse freshwater sediments demonstrated the potential use of this assay for determining stream perturbation. Significant correlations between phosphatase and total viable cell counts, as well as adenosine triphosphate biomass, suggested that alkaline phosphatase activity has utility as an indicator of microbial population density and biomass in freshwater sediments.     

A fish index of biotic integrity for South Dakota's Northern Glaciated Plains Ecoregion

Ecosystem goods and services in streams are impaired when their biotic communities are degraded by anthropogenic stressors. An index of biotic integrity (IBI) translates community structure into a standardized ecoregion-specific stream health score. Documenting stream health is especially important in the Northern Glaciated Plains (NGP) Ecoregion, which is undergoing rapid landscape alterations through increased agriculture production. Our objectives were to develop a fish IBI and validate candidate reference sites for NGP wadeable perennial streams. Fish were sampled from 54 sites (consisting of reference sites, known-condition least and most disturbed sites, and random sites) during summers 2006–2011. Candidate metrics were sorted into nine metric classes based on attributes of fish assemblage form and function. Metric values were screened using metric range, signal-to-noise ratios, responsiveness to disturbance, and redundancy tests until each metric class contained only those metrics most responsive to anthropogenic stressors. The final IBI consisted of six metrics that were reflective of prairie stream fish assemblages, and differentiated between known-condition least and most disturbed sites. The mean reference sampling site IBI scores were found to be similar to both least and most disturbed sites (Mann–Whitney U-test; P < 0.05). Twelve reference site scores were below the NGP's median (69), whereas the other 11 sites were above the median and were representative of least disturbed conditions. We now have developed a standardized bioassessment tool for evaluating stream health, as well as a baseline for long-term monitoring in a dynamic ecoregion.     

基于模拟景观的城市森林景观格局指数选取

基于现实的沈阳城市森林景观,模拟了4个景观格局梯度,并选取了1个与之相应的现实景观格局梯度,分析了28个景观格局指数在各梯度对景观破碎化和景观斑块形状复杂性的反映,从而筛选出描述这两种景观格局特征的适宜景观格局指数.结果表明：斑块密度（PD）和平均斑块面积（AREA_MN）在城市森林景观破碎化方面表现出较规律的变化趋势,斑块密度随破碎化程度的增加而增加,平均斑块面积随破碎化程度的增加而减小;面积加权平均周长面积比（PARA_AM）在描述景观斑块形状复杂性方面与景观格局梯度相吻合,且随斑块形状复杂性的增加而增加,能够较为准确地描述景观斑块形状的复杂性.     

Development of dual fish multi-metric indices of biological condition for streams with characteristic thermal gradients and low species richness

Biological indicators based on fish assemblage characteristics are used to assess stream condition worldwide. Fish-based bioassessment poses challenges in Southern New England, the USA, due to the effects of within-watershed thermal gradients on fish assemblage types, low regional species richness, and lack of minimally disturbed sites. Dual multi-metric indices (MMI) of biological condition were developed for wadeable streams based on fish assemblage characteristics sampled across watershed landscapes with varying levels of human disturbance. A coldwater MMI was developed using streams with drainage area of ≤15 km², and a mixed-water MMI for streams with drainage areas of >15 km². For each MMI development, candidate metrics represented by ecological classes were sequentially tested by metric range, within-year precision, correlation with stream size, responsiveness to landscape-level human disturbances, and redundancy. Resultant coldwater and mixed-water MMI were composed of 5 and 7 metrics, respectively. Stream sites tended to score similarly when the two MMI were applied to transitional sites, i.e., drainage areas of 5–40 km². However, some sites received high scores from the mixed-water MMI and intermediate scores from the coldwater MMI. It was thus difficult to ascertain high-quality mixed-water streams from potential coldwater streams which currently support mixed-water assemblages due to ecological degradation. High-quality coldwater streams were restricted to stream sites with drainage areas ≤15 km². The newly developed fish-based MMI will serve as a useful management tool and the dual-MMI development approach may be applicable to other regions with thermal gradients that transition from coldwater to warmwater within watersheds.     

Comparison of benthic macroinvertebrate communities by two methods: Kick- and U-net sampling

The assessment of benthic invertebrate community condition is an integral component of freshwater biomonitoring and water quality determination. Several sampling devices have been developed to collect benthic macroinvertebrates, including qualitative, semi-quantitative, and quantitative methods. In this study, we compared several benthic macroinvertebrate metrics and community assemblage measures calculated from data obtained from two sampling methods, namely the Kick- and U-net sampling devices. We reasoned that if the two methods produced similar values for benthic metrics and community composition, then samples collected by these methods should be able to be combined to build larger data sets for use in regional bioassessment analyses. No statistical differences between Kick- and U-net methods were found among standard benthic macroinvertebrate metrics, except for Kick-nets collecting more Chironomidae. Invertebrate assemblages were very similar between collection methods, although slightly greater taxonomic richness was found in U-net samples. Bray–Curtis similarity was typically >75% between methods within a stream, while classification strength-sampling-method comparability, an approach for analyzing differences in similarity between groups, indicated invertebrate assemblage similarity between collection methods was virtually identical at approximately 100%. Since these two methods produce similar results, we conclude that benthic macroinvertebrate data collected by these methods can be combined for data analysis and bioassessments with the caveat that mesh size of the sample nets is similar. In addition, if the primary study objective is to assess macroinvertebrate biodiversity, then the U-net sampling device may be more appropriate, despite the slightly greater time needed to complete field sample collection, as it tended to collect a greater diversity of species.