Adaptations to biotic and abiotic stress: Macaranga-ant plants optimize investment in biotic defence

Obligate ant plants (myrmecophytes) in the genus Macaranga produce energy- and nutrient-rich food bodies (FBs) to nourish mutualistic ants which live inside the plants. These defend their host against biotic stress caused by herbivores and pathogens. Facultative, 'myrmecophilic' interactions are based on the provision of FBs and/or extrafloral nectar (EFN) to defending insects that are attracted from the vicinity. FB production by the myrmecophyte, M. triloba, was limited by soil nutrient content under field conditions and was regulated according to the presence or absence of an ant colony. However, increased FB production promoted growth of the ant colonies living in the plants. Ant colony size is an important defensive trait and is negatively correlated to a plant's leaf damage. Similar regulatory patterns occurred in the EFN production of the myrmecophilic M. tanarius. Nectar accumulation resulting from the absence of consumers strongly decreased nectar flow, which increased again when consumers had access to the plant. EFN flow could be induced via the octadecanoid pathway. Leaf damage increased levels of endogenous jasmonic acid (JA), and both leaf damage and exogenous JA application increased EFN flow. Higher numbers of nectary visiting insects and lower numbers of herbivores were present on JA-treated plants. In the long run, this decreased leaf damage significantly. Ant food production is controlled by different regulatory mechanisms which ensure that costs are only incurred when counterbalanced by defensive effects of mutualistic insects.     

Macroinvertebrate community responses to land use: a trait-based approach for freshwater biomonitoring in Mongolia

Land-use practices in Mongolia can lead to environmental degradation and consequently affect the structure and function of biological communities. The main aim of this study was to determine land-use effects on freshwater macroinvertebrate communities based on their response to grazing and mining, using a trait-based approach (TBA). The functional structure of macroinvertebrate communities was examined using 86 categories of 16 traits. A total of 13 physical and chemical variables were significantly different among the levels of land-use intensity. Significant declines in functional diversity were observed with increased land-use intensity. The community weighted mean of 19 trait categories for 11 traits varied significantly among different levels of land-use intensity. Traits were significantly explained by environmental variables across a land-use intensity gradient. Water temperature, gravel, nitrate, silt, and cobble were the main predictor variables and explained 28% of the total variance of the trait variation. The functional structure of the macroinvertebrate community was strongly related to environmental conditions. The TBA is an important method in assessing disturbance responses in freshwater communities of steppe and taiga regions, such as in Mongolia and other countries in Central Asia and will be useful in finding best management practices for conserving aquatic ecosystems.

     

Biochemical indicators of salt stress in Plantago maritima: Implications for environmental stress assessment

Our study is focused on native spontaneous species of saline ecosystems Plantago maritima. Plants were cultivated at several salt concentrations (0, 50, 100, 200, 300, 400 and 500 mM NaCl) in a glass greenhouse under semi-controlled conditions. Growth parameters, water parameters and ionic status were determined and they were used as criteria to assess the response of P. maritima under a salinity gradient. Catalase, guaiacaol and ascobate peroxidase activities, total protein and proline were also determined. Our results show that P. maritima is a facultative halophyte capable of expressing its maximum growth potential at relatively low concentrations of salt (less than 3 g l⁻¹ NaCl). At high doses of salt (concentrations > 200 mM), the decrease in the growth of P. maritima is associated to a decrease in the uptake of K⁺. There is a disruption of the water intake of their organs and therefore results an invasion of the cytoplasm by Na⁺ toxic ion. However, stressed plants use K⁺ more sparingly. They invest especially in the production of biomass expressed by the dry weight of the shoots, and they use Na⁺ and proline for osmotic adjustment. The halophyte studied is able to accumulate high levels of proline in response to increasing salt concentration. The accumulation of the amino compound, mainly in roots, is interpreted as an indicator of salt tolerance. Additionally, a significant correlation between the tolerance of the plants to salinity and the activity of several antioxidant enzymes has been observed. Hence, we suggest the possibility of using these activities as a biochemical indicator for salt tolerance in P. maritima. Our study points out two types of biomarkers of salt exposure: enzymatic biomarkers in the leaves and proline content in the roots. Both did show very good correlation with salt exposure, and thus may be considered good biomarkers of exposure with a very good dose–response relationship.     

Comprehensive DNA barcodes for species identification and discovery of cryptic diversity in mayfly larvae from South Korea: Implications for freshwater ecosystem biomonitoring

DNA barcoding of aquatic macroinvertebrates holds much promise as a tool for taxonomic research and for providing baseline reference for phylogenetic analysis and aquatic ecosystem biomonitoring. We obtained 112 novel sequences of the barcode region of the mitochondrial DNA cytochrome c oxidase subunit I gene representing 11 families, 25 genera, and 43 species of mayfly (Insecta: Ephemeroptera) from South Korea. No species shared barcode sequences and all can be identified with barcodes with a possible exception of some species. Minimum levels of interspecific genetic distances ranged from 6.7 to 32.9% (mean: 23.7%), whereas average levels of intraspecific divergence was 3.7%. The latter value was inflated by the presence of very high divergences within some taxa. In fact, approximately 33.3% (15/45) of the species included two or more haplotype clusters showing greater than 5.0% sequence divergence and some values were as high as 32.9%. Many of the species with high intraspecific divergences are para‐ or polyphyletic and represent the possibility of species complexes. Our study suggests that type or topotype specimens should be sequenced to identify accurate barcoding clusters with morphological species concepts and also to determine the status of currently synonymized species.     

Measuring progress in status of land under forest landscape restoration using abiotic and biotic indicators

The paper suggests a minimum set of abiotic and biotic threshold indicators and progress indicators for forest landscape restoration (FLR), then also briefly discusses progress indicators of pressures and project outputs. FLR aims to restore multiple functions of forests at a landscape scale. It is predicated on the hypothesis that restoration produces enabling conditions for ecosystem services, including regulating services such as carbon sequestration and pollination, and provisioning services such as food and energy. As FLR gains greater uptake, it is increasingly important to monitor progress. The types of indicators required are influenced by the degree of forest loss and degradation. To measure the status of land under restoration, one or more abiotic and biotic threshold indicators are required, measuring the return of enabling conditions for restoration (soil quality, water, etc.), along with progress indicators measuring the reemergence of the ecosystem services. Although all elements of the proposed monitoring framework are well known, compiling them into a coherent system, suitable for application in a wide range of conditions, will take much further development.     

Cytogenetic biomonitoring in a Mexican floriculture worker group exposed to pesticides

The cytogenetic damage in floriculturists of Morelos State, Mexico, exposed to pesticides, was evaluated by mean of biological tests based on sister chromatid exchanges (SCE) in lymphocytes of peripheral blood and micronuclei (MN) in exfoliated cells of the buccal mucosa. Besides the cytogenetic analysis, the effects of pesticides exposure on the cell proliferation kinetics (CPK) by the replication index (RI) were also studied. The mitotic index (MI) to detect cytotoxic effects was also determined. Greenhouses of the towns of Santa Catarina, Jiutepec and Yecapixtla were selected for the study, because the application of chemicals to the flowers is uncontrolled. As non-exposed group, people of the town of Temisco were chosen; their activity was not related to pesticides. The SCE were analyzed in the peripheral blood of 30 persons, 22 women and 8 men, with 10 and 1.5 years of exposure to pesticides, respectively, and of 30 persons, 28 women and 2 men, that were considered as the non-exposed group. Samples of buccal mucosa were also taken from each person. Significant differences between exposed and non-exposed groups were found in SCE, CKP and MI. Besides, the MN frequencies in the exposed group were three times higher than in the non-exposed group.     

Plant metabolomics in biotic and abiotic stress: a critical overview

Abiotic and biotic stresses affect plant physiology and growth. The development of metabolomics, along with other -omics technologies, allowed in depth analysis of the reactive processes characterizing plant stress as the result of the alteration of metabolites and gene expressions. Here, we organize and interpret data from 151 studies to provide an overview about metabolomic shift after exposure to either abiotic or biotic stresses including drought, salinity, heat, heavy metal, cold, pathogens and insects. Data showed that amino acids, organic acids, sugars, and sugar alcohols quantities are influenced by stresses. Proline for example, increased in almost every stress condition, while other molecules increased or decreased depending specifically on plant tissue, plant species and type of applied stress. We concluded that although it is difficult to predict precisely what a stress will cause, some general metabolic trends can be described and improve our understanding of plant response to biotic and abiotic stresses.

     

Trophic indicators in fisheries: a call for re-evaluation

Mean trophic level (MTL) of landings and primary production required (PPR) by fisheries are increasingly used in the assessment of sustainability in fisheries. However, in their present form, MTL and PPR are prone to misinterpretation. We show that it is important to account for actual catch data, define an appropriate historical and spatial domain, and carefully consider the effects of fisheries management, based on results from a case study of Swedish fisheries during the past century.     

Preventive medicine: biomonitoring and chemoprevention

The aim of chemoprevention is to delay or prevent the development of pathological conditions, or to correct abnormal regulatory mechanisms and in some cases even reverse the process. For this intervention to succeed, biomarkers must be found that characterize impaired health status in a phase when impairment is still reversible. Genotoxicological parameters may function as biomarkers of this kind, such as inhibition or delay of mitosis, inhibition of apoptosis, increase in the number of chromosomal aberrations, decrease in the capacity of DNA repairing enzymes, or parameters characterizing immunological status (eg. decreased NK activity). With the help of early signs, impending negative changes or illness (which could not be prevented without effective chemoprevention) can be predicted in apparently healthy individuals. Thus, the first and most important step in chemoprevention is risk characterization. Risk characterization is a complex concept, which includes risk analysis, risk assessment and risk management. Chemoprevention is a part of the latter process. Biomarkers, which can be studied mainly by up-to-date molecular biological methods, are used in discovering risk factors and also in the assessment of caused biological effects. Besides avoiding risk factors, it is very important to strengthen the protective mechanisms, to promote the metabolism of toxic substances, and to repair damage (ward off denaturation of macromolecules caused by free oxygen radicals with antioxidants for example). Chemopreventive agents are therefore diverse in their targets. Most of them have antioxidant properties, such as plant-derived substances, like glycosides, flavonoids, various vitamins, carotinoids, and some trace elements such as selenium. Another group of chemopreventive agents inhibit cell proliferation, or induce programmed cell death (apoptosis). Another group influence terminal differentiation, or inhibit angiogenesis. Some chemopreventive agents affect the metabolism or detoxification of xenobiotics, or boost the functions of the immune system. In many cases these effects are mediated by the rate of methylation of DNA molecules.     

Spatiotemporal changes in diatom ecological profiles: implications for biomonitoring

Diatom indices developed in certain geographic regions are frequently used elsewhere, despite the strong evidence that such metrics are less useful when applied in regions other than that where species–environment relationships were originally assessed, showing that species have particular autoecological requirements in different geographic areas. In this study, we define the ecological profiles for selected environmental variables in three common epilithic diatom species in the Duero Basin (NW Spain), comparing our results with data gathered from different geographic regions. We assess differences in autoecological parameters obtained from the northern and southern subbasins, and from different years, in order to observe whether significant small-scale, spatiotemporal changes exist. Our results show that there are variations in species’ autoecological parameters between different regions. Furthermore, there are significant changes comparing northern and southern Duero subbasins for certain species and physiochemical variables. Additionally, different autoecologies have been observed for certain diatoms and environmental factors comparing two different years. It can be concluded that freshwater diatom autoecologies can vary between different geographic areas. This implies that, in order to improve water-quality bioassessments, autoecology-based diatom metrics should be developed by quantifying species distributions along environmental gradients, using datasets representative of the areas or river types where the metrics will be applied.     

The apoplastic oxidative burst in response to biotic stress in plants: a three-component system

The oxidative burst, the generation of reactive oxygen species (ROS) in response to microbial pathogen attack, is a ubiquitous early part of the resistance mechanisms of plant cells. It has also become apparent from the study of a number of plant-pathogen interactions and those modelled by elicitor treatment of cultured cells that there may be more than one mechanism operating. However, one mechanism may be dominant in any given species. NADPH oxidases have been implicated in a number of systems and have been cloned and characterized. However, the enzyme system which is the major source of ROS in French bean (Phaseolus vulgaris) cells treated with a cell wall elicitor from Colletotrichum lindemuthianum, appears to be dependent on an exocellular peroxidase. The second component, the extracellular alkalinization, occurs as a result of the Ca(2+) and proton influxes and the K(+) efflux common to most elicitation systems as one of the earliest responses. The third component, the actual reductant/substrate, has remained elusive. The low molecular weight compound composition of apoplastic fluid was compared before and after elicitation. The substrate only becomes available some min after elicitation and can be extracted, so that by comparing the profiles by LC-MS it has been possible to identify possible substrates. The mechanism has proved to be complex and may involve a number of low molecular weight components. Stimulation of H(2)O(2) production was observed with saturated fatty acids such as palmitate and stearate without concomitant oxylipin production. This biochemical evidence is supported by immunolocalization studies on papillae forming at bacterial infection sites that show the peroxidase isoform present at sites of H(2)O(2) production revealed by cerium chloride staining together with the cross-linked wall proteins and callose and callose synthase. The peroxidase has been cloned and expressed in Pichia pastoris and has been shown to catalyse the oxidation reaction with the same kinetics as the purified enzyme. Furthermore, Arabidopsis plants transformed heterologously using the French bean peroxidase in antisense orientation have proved to be highly susceptible to bacterial and fungal pathogens. Thus it is possible that Arabidopsis is another species with the potential to mount an apoplastic oxidative burst and these transformed plant lines may be useful to identify the peroxidase that is responsible.     

Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos

Timely and accurate biodiversity analysis poses an ongoing challenge for the success of biomonitoring programs. Morphology-based identification of bioindicator taxa is time consuming, and rarely supports species-level resolution especially for immature life stages. Much work has been done in the past decade to develop alternative approaches for biodiversity analysis using DNA sequence-based approaches such as molecular phylogenetics and DNA barcoding. On-going assembly of DNA barcode reference libraries will provide the basis for a DNA-based identification system. The use of recently introduced next-generation sequencing (NGS) approaches in biodiversity science has the potential to further extend the application of DNA information for routine biomonitoring applications to an unprecedented scale. Here we demonstrate the feasibility of using 454 massively parallel pyrosequencing for species-level analysis of freshwater benthic macroinvertebrate taxa commonly used for biomonitoring. We designed our experiments in order to directly compare morphology-based, Sanger sequencing DNA barcoding, and next-generation environmental barcoding approaches. Our results show the ability of 454 pyrosequencing of mini-barcodes to accurately identify all species with more than 1% abundance in the pooled mixture. Although the approach failed to identify 6 rare species in the mixture, the presence of sequences from 9 species that were not represented by individuals in the mixture provides evidence that DNA based analysis may yet provide a valuable approach in finding rare species in bulk environmental samples. We further demonstrate the application of the environmental barcoding approach by comparing benthic macroinvertebrates from an urban region to those obtained from a conservation area. Although considerable effort will be required to robustly optimize NGS tools to identify species from bulk environmental samples, our results indicate the potential of an environmental barcoding approach for biomonitoring programs.     

Metallothionein as a tool in biomonitoring programmes

The biochemical features of metallothioneins and their functional role in the cell are described. On this basis, the potential role of MTs as a biomarker of exposure in aquatic organisms, such as fishes and molluscs, is evaluated in the light of recent knowledge about MT gene regulation and inducibility. It appears that in fish MTs should be considered as a kind of stress protein which is particularly responsive to heavy metals. In molluscs, in particular in mussels, MTs seem more specifically involved in responses to heavy metals and they should therefore be considered a biomarker of exposure to heavy metal pollution. Common techniques for MT evaluation are listed and a simple spectrophotometric method recently developed is also reported. Finally, the correct approach to the use of MTs as a biomarker of exposure in biomonitoring programmes for an assessment of the physiological status of aquatic organisms is discussed.     

The biotic ligand model: a historical overview

During recent years, the biotic ligand model (BLM) has been proposed as a tool to evaluate quantitatively the manner in which water chemistry affects the speciation and biological availability of metals in aquatic systems. This is an important consideration because it is the bioavailability and bioreactivity of metals that control their potential to cause adverse effects. The BLM approach has gained widespread interest amongst the scientific, regulated and regulatory communities because of its potential for use in developing water quality criteria (WQC) and in performing aquatic risk assessments for metals. Specifically, the BLM does this in a way that considers the important influences of site-specific water quality. This journal issue includes papers that describe recent advances with regard to the development of the BLM approach. Here, the current status of the BLM development effort is described in the context of the longer-term history of advances in the understanding of metal interactions in the environment upon which the BLM is based. Early developments in the aquatic chemistry of metals, the physiology of aquatic organisms and aquatic toxicology are reviewed first, and the degree to which each of these disciplines influenced the development of water quality regulations is discussed. The early scientific advances that took place in each of these fields were not well coordinated, making it difficult for regulatory authorities to take full advantage of the potential utility of what had been learned. However, this has now changed, with the BLM serving as a useful interface amongst these scientific disciplines, and within the regulatory arena as well. The more recent events that have led to the present situation are reviewed, and consideration is given to some of the future needs and developments related to the BLM that are envisioned. The research results that are described in the papers found in this journal issue represent a distinct milestone in the ongoing evolution of the BLM approach and, more generally, of approaches to performing ecological assessments for metals in aquatic systems. These papers also establish a benchmark to which future scientific and regulatory developments can be compared. Finally, they demonstrate the importance and usefulness of the concept of bioavailability and of evaluative tools such as the BLM.     

Louisiana waterthrushes (Seiurus motacilla) and habitat assessments as cost-effective indicators of instream biotic integrity

1. Benthic stream animals, in particular macroinvertebrates, are good indicators of water quality, but sampling can be laborious to obtain accurate indices of biotic integrity. Thus, tools for bioassessment that include measurements other than macroinvertebrates would be valuable additions to volunteer monitoring protocols. 2. We evaluated the usefulness of a stream‐dependent songbird, the Louisiana waterthrush (waterthrush, Seiurus motacilla) and the Environmental Protection Agency Visual Habitat Assessment (EPA VHA) as indicators of the macrobenthos community in headwater streams of the Georgia Piedmont, U.S.A. We sampled macrobenthos, surveyed waterthrushes and measured habitat characteristics along 39 headwater reaches across 17 catchments ranging from forested to heavily urbanised or grazed by cattle. 3. Of the indicators considered, waterthrush occupancy was best for predicting relative abundances of macrobenthic taxa, while the EPA VHA was best for predicting Ephemeroptera–Plecoptera–Trichoptera (EPT) richness. Individual components of EPA VHA scores were much less useful as indicators of EPT richness and % EPT when compared with the total score. Waterthrushes were found along streams with higher % EPT, a lower Family Biotic Index (FBI) values and greater macrobenthos biomass. 4. While macroinvertebrates remain one of the most direct indicators of stream water quality, stream bird surveys and reach‐scale habitat assessments can serve as cost‐effective indicators of benthic macroinvertebrate communities. Using stream‐dependent birds as an early warning signal for degradation of stream biotic integrity could improve the efficacy of catchment monitoring programmes in detecting and identifying perturbations within the catchment.     

Single cell gel electrophoresis assay: a new technique for human biomonitoring studies

Human biomonitoring using the single cell gel electrophoresis (SCGE) or comet assay is a novel approach for the assessment of genetic damage in exposed populations. This assay enables the detection of various forms of DNA damage in individual cells with ease and speed and is, therefore, well suited to the analysis of a large group in a population. Here, application of SCGE assay in the identification of dietary protective factors, in clinical studies and in monitoring the risk of DNA damage resulting from occupational, environmental or lifestyle exposures is reviewed. Also, the comparative sensitivity of SCGE assay and conventional cytogenetic tests to detect genetic damage is discussed. Finally, strengths and shortcomings of the SCGE assay are addressed.