Haematozoa of fishes in Humboldt Bay, California.

Five hundred seven fish representing 45 species from Humboldt Bay, California (USA) were examined for blood parasites. Four fish (less than 1%) from two species were infected. Haemogregarina leptocotti sp. n. is described from one of 33 staghorn sculpin (Leptocottus armatus). Haemogregarina roelofsi sp. n. is described from three of 15 black rockfish (Sebastes melanops). Gametocytes of H. leptocotti sp. n. averaged 6.1 x 2.1 microns with a 2.7 x 1.7 microns oval nucleus; those of H. roelofsi sp. n. averaged 5.5 x 2.7 microns with a 2.5 x 2.2 microns rectangular nucleus. Neither species of parasite had distinct chromatin granules, a polar cap, or more than one gametocyte in an infected cell. Haematozoa are relatively rare in fishes of the northeastern Pacific Ocean.     

Behaviour of growth hormone transgenic coho salmon Oncorhynchus kisutch in marine mesocosms assessed by acoustic tag telemetry

Underwater acoustic tag telemetry was used to assess behavioural differences between juvenile wild‐type (i.e. non‐transgenic, NT) and growth hormone (GH) transgenic (T) coho salmon Oncorhynchus kisutch in a contained simulated ocean environment. T O. kisutch were found across days to maintain higher baseline swimming speeds than NT O. kisutch and differences in response to feeding were detected between T and NT genotypes. This is the first study to assess behaviour of GH transgenic salmonids in a marine environment and has relevance for assessing whether behavioural effects of GH overexpression seen in freshwater environments can be extrapolated to oceanic phases of the life cycle.     

Neogene paleoceanographic events recorded in an active-margin setting: Humboldt basin, California

Recognition of North Pacific paleoceanographic events in the marginal Humboldt (Eel River) basin of northern California enables correlation of stratigraphic sections and development of a chronostratigraphy. Paleoclimatically related coiling shifts in Neogloboquadrina pachyderma (Ehrenberg) and benthic foraminiferal datums form the basis of the chronostratigraphy. Benthic foraminiferal datums are defined by the occurrence of selected benthic species and abundance maxima of benthic biofacies. The compiled chronostratigraphy is used to refine reconstructions of the depositional history of Humboldt basin. Paleoceanographic events, recognized by the distribution of benthic foraminiferal biofacies, are used to infer paleoceanographic history along the northeastern Pacific margin.

The similarity in coiling curves of N. pachyderma from the marine sequence at DSDP Site 173 and the coastal Centerville Beach section of Humboldt basin and at other independently dated sites along the northeastern Pacific margin demonstrates that matching records of climatic oscillations is a reliable method of correlating marine sequences. Benthic fauna from the Centerville Beach section vary in phase with climatically related coiling shifts in N. pachyderma. In particular these data show an increase in displaced neritic fauna during inferred warm intervals and resurgence of deeper bathyal fauna during inferred cool events. Similar data are observed from the inland Eel River section, demonstrating that benthic foraminiferal trends recognized at Centerville Beach can be identified elsewhere in Humboldt basin. This in-phase benthic response to climatic fluctuations probably results from changes in vertical depth range of many benthic species in response to paleoclimatically related vertical changes in water-mass position.

Depositional histories reconstructed for two key sites in southern Humboldt basin indicate low rates of sediment accumulation during early basin filling with hemipelagic sediments. Initiation of turbidite sedimentation in the early Pliocene resulted in a sharp increase in rate of sediment accumulation. This increase in rate of sediment accumulation is partially a response to tectonic uplift in the northern Coast Ranges and may be an effect of realignment of motion between the Pacific and North American plates at about this time. The inland site shoaled more rapidly during turbidite sedimentation as a result of a higher rate of sediment accumulation. The rate of sediment accumulation increased again at this site in the late Pliocene during deposition of shelf and nearshore facies. The Eel River region subsided concurrent with deposition of these shallow-water deposits.     

Food habits, occurrence, and population structure of the bat ray, Myliobatis californica, in Humboldt Bay, California

The bat ray, Myliobatis californica, is the most common, large predatory fish in Humboldt Bay, California. To prevent bat ray predation on cultured oyster beds, much effort has focused on reducing their population. A 13 month study was conducted in Humboldt Bay to examine the rays' use of the bay, population structure, and feeding ecology. Bat rays are seasonally found in Humboldt Bay during the spring, summer, and early fall months. Adult rays were most abundant during the summer months, while numbers of juveniles increased through the summer and early fall, indicating that Humboldt Bay is an important pupping and nursery ground. Very few rays were found in the bay during the colder months of the year. This decline in abundance is attributed to cooler water temperatures (< 10° C). The stomach contents from 503 bat rays were examined. Overall, clams were the predominant prey item. The index of importance and Shannon-Weiner diversity index indicated that food habits of bat rays change with increasing size. Larger prey items and a wider variety of prey items were consumed as rays increased in size. Dietary importance of small clams and Crangon shrimp decreased with increasing ray size, while the importance of larger prey items (e.g. large clams, Cancer crabs, blue mud shrimp, echiuran worms) increased. Predation on oysters was rare. Differences between the diets of male and female rays of similar sizes were also observed.     

Comparison between PIT and radio telemetry to evaluate winter habitat use and activity patterns of juvenile Atlantic salmon and brown trout

Winter habitat use and activity patterns of juvenile Atlantic salmon and brown trout were analysed in a comparative study between Passive Integrated Transponder (PIT) technology, radio telemetry and underwater observation by snorkelling. Two study periods were conducted in Stoney River, Newfoundland, Canada. During Study period I, 49 juvenile Atlantic salmon (fork length: 11.0–18.0 cm) and 7 brown trout (11.0–17.3 cm) were tagged with PIT tags and/or radio transmitters in late winter of 2004. During Study period II, 18 juvenile Atlantic salmon (fork length: 12.0–18.4 cm) and 23 brown trout (10.9–20.8 cm) were tagged and tracked twice a day at 10:00 h and 22:00 h on five consecutive days in late winter of 2005. From the 56 fish released during Study period I, on average 19.6 ± 6.0% of the PIT tagged fish and 99.3 ± 2.2% of the radio tagged fish were relocated during any given survey. Over the Study period II, 39% of fish emigrated from the study site. PIT technology had an efficiency of 39.2 ± 14.1% to detect the remaining fish. In contrast, radio telemetry relocated on average 96.9 ± 6.5% of the tagged fish whereas by snorkelling on average only 4.1 ± 5.6% of the tagged fish were observed. PIT telemetry may however be more efficient in smaller, less heterogeneous streams. The advantage of PIT technology over radio telemetry is clearly that it is relatively less costly permitting higher numbers of individuals to be tagged and there is no limit in the operational life of the transponder. In winter, juvenile salmonids preferred low flow velocity and no preferences were observed for any specific water depth over the range of available water depths. Fish selected preferentially boulder habitat over other substrates in the environment. Habitat utilisation did not differ between day and night. The use of winter preference indices may be important for future habitat modelling.     

The use of chemical cues in the upstream migration of coho salmon, Oncorhynchus kisutch Walbaum

The migratory behaviour of coho salmon was studied in the field. Coho salmon, Oncorhynchus kisutch , exposed to synthetic odours in a hatchery and released into Lake Michigan as juveniles, were recaptured as migrating adults 18 months later. The movements of 43 individuals were followed in experiments examining the role of imprinted chemical cues in the homing migration. Movements in relation to controlled distributions of the imprinting odours revealed that chemical cues are used by the salmon in their upstream migration. Acting with the rheotactic response, fish were guided upstream by imprinting odours simulating their home stream. Coho salmon, in the absence of their imprinting odour, respond negatively to the current. Differential responses to current appear to serve in segregating fish imprinted to odours of different home streams.     

Growth hormone and seawater adaptation in coho salmon, Oncorhynchus kisutch

1. Effects of growth hormone (GH) were examined on short-term aspects of seawater adaptation in coho salmon smolts. 2. Injection of somatostatin (SRIF) immediately prior to seawater entry suppressed plasma GH levels, but did not have any significant effects at 6 or 12 hr on hematocrits, plasma glucose or plasma Na+ levels. 3. Plasma GH levels increased 250% within 36 hr after seawater exposure. 4. Plasma glucose levels, in contrast, were significantly lower in the seawater fish after 36 hr post-exposure. 5. Plasma Na+ levels increased to 190 mEq/1 by 24 hr but subsequently returned to freshwater levels while hematocrits showed no significant changes over the 72 hr of exposure. 6. The significance of these results is discussed in terms of successful seawater adaptation in coho salmon.     

Defining winter trophic habitat of juvenile Gulf Sturgeon in the Suwannee and Apalachicola rivermouth estuaries, acoustic telemetry investigations

Three automated listening post‐telemetry studies were undertaken in the Suwannee and Apalachicola estuaries to gain knowledge of habitats use by juvenile Gulf Sturgeons (Acipenser oxyrinchus desotoi) on winter feeding grounds. A simple and reliable method for external attachment of small acoustic tags to the dorsal fin base was developed using shrink‐tubing. Suspending receivers on masts below anchored buoys improved reception and facilitated downloading; a detection range of 500–2500 m was realized. In the Apalachicola estuary, juvenile GS stayed in shallow water (< 2 m) within the estuarine transition zone all winter in the vicinity of the Apalachicola River mouth. Juvenile GS high‐use areas did not coincide with high density benthic macrofauna areas from the most recent (1999) benthos survey. In the Suwannee estuary, juveniles ranged widely and individually throughout oligohaline to mesohaline subareas of the estuary, preferentially using mesohaline subareas seaward of Suwannee Reef (52% of acoustic detections). The river mouth subarea was important only in early and late winter, during the times of adult Gulf Sturgeon migrations (41% of detections). Preferred winter feeding subareas coincided spatially with known areas of dense macrofaunal benthos concentrations. Following a dramatic drop in air and water temperatures, juvenile GS left the river mouth and estuary, subsequently being detected 8 km offshore in polyhaline open Gulf of Mexico waters, before returning to the estuary. Cold‐event offshore excursions demonstrate that they can tolerate full‐salinity polyhaline waters in the open Gulf of Mexico, for at least several days at a time. For juvenile sturgeons, the stress and metabolic cost of enduring high salinity ( Jarvis et al., 2001 ; McKenzie et al., 2001 ; Singer and Ballantyne, 2002 ) for short periods in deep offshore waters seems adaptively advantageous relative to the risk of cold‐event mortality in shallow inshore waters of lower salinity. Thus, while juveniles can tolerate high salinities for days to weeks to escape cold events, they appear to make only infrequent use of open polyhaline waters. Throughout the winter foraging period, juvenile GS stayed primarily within the core area of Suwannee River mouth influence, extending about 12 km north and south of the river mouth, and somewhat seaward of Suwannee Reef (< 5 km offshore). None were detected departing the core area past either of the northern or southern acoustic gates, located 66 and 52 km distant from the river mouth, respectively.     

Adaptive trade-offs in juvenile salmonid metabolism associated with habitat partitioning between coho salmon and steelhead trout in coastal streams

1. Adaptive trade-offs are fundamental to the evolution of diversity and the coexistence of similar taxa and occur when complimentary combinations of traits maximize efficiency of resource exploitation or survival at different points on environmental gradients. 2. Standard metabolic rate (SMR) is a key physiological trait that reflects adaptations to baseline metabolic performance, whereas active metabolism reflects adaptations to variable metabolic output associated with performance related to foraging, predator avoidance, aggressive interactions or migratory movements. Benefits of high SMR and active metabolism may change along a resource (productivity) gradient, indicating that a trade-off exists among active metabolism, resting metabolism and energy intake. 3. We measured and compared SMR, maximal metabolic rate (MMR), aerobic scope (AS), swim performance (UCrit) and growth of juvenile hatchery and wild steelhead and coho salmon held on high- and low-food rations in order to better understand the potential significance of variation in SMR to growth, differentiation between species, and patterns of habitat use along a productivity gradient. 4. We found that differences in SMR, MMR, AS, swim performance and growth rate between steelhead trout and coho salmon were reduced in hatchery-reared fish compared with wild fish. Wild steelhead had a higher MMR, AS, swim performance and growth rate than wild coho, but adaptations between species do not appear to involve differences in SMR or to trade-off increased growth rate against lower swim performance, as commonly observed for high-growth strains. Instead, we hypothesize that wild steelhead may be trading off higher growth rate for lower food consumption efficiency, similar to strategies adopted by anadromous vs. resident brook trout and Atlantic salmon vs. brook trout. This highlights potential differences in food consumption and digestion strategies as cryptic adaptations ecologically differentiating salmonid species. 5. We hypothesize that divergent digestive strategies, which are common and well documented among terrestrial vertebrates, may be an important but overlooked aspect of adaptive strategies of juvenile salmonids, and fish in general.     

Assessment of juvenile coho salmon movement and behavior in relation to rehabilitation efforts in the Trinity River, California, using PIT tags and radiotelemetry

Coho salmon (Oncorhynchus kisutch) of the Southern Oregon/Northern California Coast (SONCC) Evolutionarily Significant Unit (ESU) is federally listed as a threatened species. The Trinity River Restoration Program (TRRP) is rehabilitating the Trinity River to restore coho salmon (coho) and other salmonid populations. In order to evaluate the program’s actions, several studies of movements and behavior of coho in the Trinity River were conducted from 2006 to 2009, including snorkel surveys and mark-recapture techniques based on Passive Integrated Transponder (PIT) tags, elastomer tags, and radio transmitters. Catch, recapture, and condition of natural sub-yearlings, along with site fidelity and emigration of hatchery-reared yearlings in rehabilitated and reference habitats, were studied. Location was important because coho were absent from the lower controlled and rehabilitated sites most of the time. However, rehabilitation did not have a significant effect on natural coho salmon at the site level. Apparent survival of radio-tagged, hatchery-reared yearling coho released downstream from Lewiston Dam was much lower in the first 10 km downstream from the release site than in other areas between Lewiston Dam and the Klamath River estuary. Estimated survival of yearling hatchery coho salmon per 100 km down to Blake’s Riffle was estimated at 64 % over the distance of the 239 km study area. Migration primarily occurred at night in the upper Trinity River; however, as yearlings moved through the lower Trinity River towards the Klamath River, estuary nocturnal migration became less. Apparent survival was generally lowest in areas upstream from the North Fork of the Trinity River.     

Salt marsh harvest mouse demography and habitat use in the Suisun Marsh,California

We undertook a 2-year (2002–2004) mark–recapture study to investigate demographic performance and habitat use of salt marsh harvest mice (Reithrodontomys raviventris halicoetes) in the Suisun Marsh. We examined the effects of different wetland types and microhabitats on 3 demographic variables: density, reproductive potential, and persistence. Our results indicate that microhabitats dominated by mixed vegetation or pickleweed (Salicornia spp.) supported similar salt marsh harvest mouse densities, reproductive potential, and persistence throughout much of the year, whereas few salt marsh harvest mice inhabited upland grass-dominated microhabitats. We found that densities were higher in diked wetlands, whereas post-winter persistence was higher in tidal wetlands, and reproductive potential did not differ statistically between wetland types. Our results emphasize the importance of mixed vegetation for providing adequate salt marsh harvest mouse habitat and suggest that, despite their physiognomic and hydrological differences, both diked and tidal wetlands support salt marsh harvest mouse populations by promoting different demographic attributes. We recommend that habitat management, restoration, and enhancement efforts include areas containing mixed vegetation in addition to pickleweed in both diked and tidal wetlands. © 2011 The Wildlife Society.     

Discovery and characterization of single nucleotide polymorphisms in coho salmon,Oncorhynchus kisutch

Molecular population genetic analyses have become an integral part of ecological investigation and population monitoring for conservation and management. Microsatellites have been the molecular marker of choice for such applications over the last several decades, but single nucleotide polymorphism (SNP) markers are rapidly expanding beyond model organisms. Coho salmon (Oncorhynchus kisutch) is native to the north Pacific Ocean and its tributaries, where it is the focus of intensive fishery and conservation activities. As it is an anadromous species, coho salmon typically migrate across multiple jurisdictional boundaries, complicating management and requiring shared data collection methods. Here, we describe the discovery and validation of a suite of novel SNPs and associated genotyping assays which can be used in the genetic analyses of this species. These assays include 91 that are polymorphic in the species and one that discriminates it from a sister species, Chinook salmon. We demonstrate the utility of these SNPs for population assignment and phylogeographic analyses, and map them against the draft trout genome. The markers constitute a large majority of all SNP markers described for coho salmon and will enable both population‐ and pedigree‐based analyses across the southern part of the species native range.     

Temperature preference in two populations of juvenile coho salmon,oncorhynchus kisutch

Synopsis Two groups of coho salmon,Oncorhynchus kisutch, were raised under identical regimes to test the hypothesis that the group from a stream with lower and less variable temperatures would have a lower and less variable preferred temperature than would the group from a stream with warmer and more variable temperatures. The preferred (modal) temperatures in an electronic shuttlebox of coho salmon young from a relatively cool, groundwater-fed stream were slightly lower and less variable than those of young from a warmer and more heterothermal stream (mean = 9.6° C, range: 6–16° C vs. mean = 11.6° C, range: 7–21° C). However, there was a great deal of variation within and among individual fish. While some genetic variation in thermal preference may exist, the species seems best characterized as tolerant of relatively large temperature fluctuations.     

Birds at a Southern California beach: seasonality, habitat use and disturbance by human activity

Use of a Santa Barbara beach by people and birds varied in both time and space. There were 100 birds, 18 people and 2 dogs per kilometer. Bird density varied primarily with the season and tide while human activity varied most between weekend and weekday. Bird distributions along the beach were determined mainly by habitat type (particularly a lagoon and exposed rocky intertidal areas) For crows and western gulls, there was some evidence that access to urban refuse increased abundance. Interactions between birds and people often caused birds to move or fly away, particularly when people were within 20 m. During a short observation period, 10% of humans and 39% of dogs disturbed birds. More than 70% of birds flew when disturbed. Bird species varied in the frequency that they were disturbed, partially because a few bird species foraged on the upper beach where contact with people was less frequent. Most disturbances occurred low on the beach. Although disturbances caused birds to move away from humans, most displacement was short enough that variation in human activity did not alter large-scale patterns of beach use by the birds. Birds were less reactive to humans (but not dogs) when beach activity was low.     

Induced thermotolerance and tissue Hsc70 in juvenile coho salmon, Oncorhynchus kisutch

We examined Hsc70 in gill, liver and caudal fin from coho salmon ( Oncorhynchus kisutch ) before (ambient, ~12 °C) and after a sublethal heat shock of 25 °C for 1 h. Increased levels were observed for at least 48 h in all three tissues. Attempts to demonstrate isoforms of this heat-shock protein were not successful using four different antibodies. However, one of these antibodies recognized isoforms in brine shrimp and oysters, two organisms in which the heat-shock response has been well characterized. Extracts of those organisms and coho salmon tissues were run on the same gels and evaluated on the same Western blots, at the same time. We believe that our results provide a reliable account of Hsc70 in these fish under these conditions. Limited experiments showed that induced thermotolerance was achieved in these coho salmon, lasting for about 1 week after the sublethal heat shock. These data suggest that increased levels of Hsc70 are correlated with induced thermotolerance in these fish.     

Insights into habitat utilisation of the hawksbill turtle, Eretmochelys imbricata (Linnaeus, 1766), using acoustic telemetry

Patterns of distribution, key biometric parameters and home range extent were determined for hawksbill turtles at Lighthouse Reef Atoll (LRA), Belize over two field seasons (16 days, 2009; 30 days, 2010). Relative abundance was determined using 49 sightings transects (≈ 1 km) distributed across the atoll and of all turtles encountered (n = 68), 91% were immature (CCL_min ≤ 65 cm). Habitat type was significantly correlated with abundance, with more turtles encountered on the coral reef than in the lagoon (GzLMM, χ²₂ = 6.85, p < 0.05; CPUE reef = 1.41 turtles h^− 1, CPUE lagoon = 0.62 turtles h^− 1). Hawksbills were also significantly more abundant within protected areas (GzLMM, χ²₁ = 8.69, p < 0.05; CPUE Blue Hole Natural Monument (BHNM) = 2.96 turtles person^− 1 h^− 1; CPUE Half Moon Caye Natural Monument (HMCNM) = 2.34 turtles h^− 1; outside boundaries = 0.88 turtles h^− 1). Of 26 captures, 19 focal individuals were equipped with ultrasonic transmitters for active acoustic telemetry, and tracked for 6-25 days (n = 10, 2009; n = 9, 2010). Spatial habitat utilisation was found to be highly variable, with large areas of overlap between distinct home ranges. Home range averaged 31.2 ha ± 32.6 (range 5.1-111.3 ha) for the juveniles that were successfully tracked (n = 15), with maximum displacement in the order of 1.8 km ± 1.0 (range 0.5-4.0 km) and net displacement at 1.2 km ± 0.9. This offshore atoll constitutes an important developmental habitat for the regional population and although our tracking durations were limited, home range of juvenile hawksbills at this site is significantly more expansive than that documented elsewhere.     

Effects of ration on somatotropic hormones and growth in coho salmon

We examined the response of growth hormone (GH), total plasma insulin-like growth-factor I (IGF-I), and growth rate to a change in ration in coho salmon. Tanks of individually tagged fish were placed on high, medium, or low ration, and sampled every 2 weeks for 8 weeks to create a range of growth rates. Some fish received non-lethal blood draws, while others were sampled terminally. Plasma IGF-I levels were higher in high ration fish than in low ration fish from 4 weeks after the beginning of experimental diets to the end of the experiment. GH levels were low and similar in all fish after changing rations, except for the fish in the low ration group at week 2. IGF-I was strongly correlated with specific growth rate in weight in terminally sampled fish after 4 weeks. GH did not correlate with growth rate or IGF-I levels. Growth parameters (length, weight, specific growth rates in weight and length, and condition factor) responded to ration. Serial sampling reduced growth rates and hematocrit, but did not change hormone levels. This study shows that IGF-I responds to changed rations within 2-4 weeks in salmonids.