Inoculation with native soil improves seedling survival and reduces non-native reinvasion in a grassland restoration

Losses of grasslands have been largely attributed to widespread land-use changes, such as conversion to row-crop agriculture. The remaining tallgrass prairie faces further losses due to biological invasions by non-native plant species, often with resultant ecosystem degradation. Of critical concern for conservation, restoration of native grasslands has been met with little success following eradication of non-native plants. In addition to the direct and indirect effects of non-native invasive plants on beneficial soil microbes, management practices targeting invasive species may also negatively affect subsequent restoration efforts. To assess mechanisms limiting germination and survival of native species and to improve native species establishment, we established six replicate plots of each of the following four treatments: (1) inoculated with freshly collected prairie soil with native seeds; (2) inoculated with steam-pasteurized soil with native seeds; (3) noninoculated with native seeds; or (4) noninoculated/nonseeded control. Inoculation with whole soil did not improve seed germination; however, addition of whole soil significantly improved native species survival, compared to pasteurized soil or noninoculated treatments. Inoculation with whole soil significantly decreased reestablishment of non-native invasive Bothriochloa bladhii (Caucasian bluestem); at the end of the growing season, plots receiving whole soil consisted of approximately 30% B. bladhii cover, compared to approximately 80% in plots receiving no soil inoculum. Our results suggest invasion and eradication efforts negatively affect arbuscular mycorrhizal hyphal and spore abundances and soil aggregate stability, and inoculation with locally adapted soil microbial communities can improve metrics of restoration success, including plant species richness and diversity, while decreasing reinvasion by non-native species.     

喀斯特地区石漠化生态修复对土壤生物多样性的影响

我国西南喀斯特地区是具有土层薄和土被不连续等特征的生态脆弱区,人为过度干扰和土地不当利用导致了生境退化甚至石漠化的发生。从“九五”规划到“十三五”规划,为了有效抑制并逆转石漠化趋势,生态修复措施得到普遍的推广应用。“十四五”规划进一步提出科学推进石漠化综合治理,提高生态系统自我修复能力和稳定性。从土壤微生物、原生动物、线虫、微节肢动物、蚯蚓和线蚓等方面,综述了喀斯特地区生态修复对土壤生物多样性的影响。研究发现：(1)喀斯特生境细菌和真菌的多样性高于非喀斯特生境,原因是喀斯特具有较高的土壤pH和钙含量;(2)与非喀斯特生境相比,喀斯特生境土壤动物类群数相差不大而个体密度较低;(3)石漠化过程伴随着植被退化,降低了土壤微生物种类和功能多样性,土壤动物的个体密度和类群数也呈现降低趋势;(4)生态修复促进植被正向演替,土壤微生物量和酶类活性逐渐上升,真菌/细菌生物量比值增大,土壤动物个体密度和类群数增加,有利于土壤固碳和生态修复。因此,土壤生物多样性是适合指示喀斯特石漠化的生态修复的生物学指标。研究建议：(1)在传统分类鉴定基础上,结合宏基因组学、宏蛋白质组学和同位素标记等技术,完善生态修复的...     

Role of Soil Organisms in the Maintenance of Species-Rich Seminatural Grasslands through Mowing

To preserve species-rich grasslands, management practices such as mowing are often required. Mowing is known to promote aboveground conditions that help to maintain plant species richness, but whether belowground effects are important as well is not known. We hypothesized that if mowing decreases belowground carbon transfer by reducing root mass, this will reduce the abundance and activity of soil decomposers and lead to diminished nutrient availability in soil. In grasslands, this would provide a means to mitigate the negative effects of nitrogen enrichment on plant species richness. We established experimental plots on grassland with one-third of plots growing untouched, one-third mowed once a summer, and one-third mowed twice a summer for three growing seasons. Root and soil attributes were measured at each plot 1 month after each mowing. Mowing decreased root mass but had few effects on belowground biota and soil NH₄-N, NO₃-N, and PO₄-P concentrations. Mowing did not affect root N concentrations. Our results show that despite reducing root mass, mowing may have few effects on those soil biota that control nutrient supply and, as a result, have no clear-cut effects on nutrient availability in soil. This suggests that the effects of mowing on soil decomposers and soil nutrient availability may not provide an effective means to mitigate N enrichment and enhance plant species richness in grasslands in a timescale of a few years. Whether such effects could, however, be achieved with longer lasting mowing remains open.     

Disturbance is more important than seeding or grazing in determining soil microbial communities in a semiarid grassland

A primary goal of ecological restoration is often to return processes and functions to degraded ecosystems. Soil, while often ignored in restoration, supports diverse communities of organisms and is a fundamental actor in providing ecosystem processes and services. We investigated the impact of seeding and livestock grazing on plant communities, soil microorganisms, and soil fertility 3 years after the restoration of a disturbed pipeline corridor in southeastern Arizona. The initial soil disturbance and topsoil treatment, regardless of seeding or grazing, was the most influential factor in determining differences in both plant and microbial communities. Compared with the control, the disturbed and restored sites had greater plant species richness, greater total herbaceous plant cover, greater soil organic matter, higher pH, and differed in soil nutrients. Bacteria and fungi appeared to generally correlate with micro‐environment and soil physiochemical properties rather than specific plant species. The undisturbed control had a smaller proportion of bacterial functional groups associated with the breakdown of plant biomass (polysaccharide decomposition) and a smaller proportion of arbuscular mycorrhizal fungi (AMF) compared with disturbed and restored sites. The ability of the unseeded disturbed site to recover robust vegetation may be due in part to the high presence of AMF. These differences show selection for soil microorganisms that thrive in disturbed and restored sites and may contribute to increased plant productivity. Restoration of specific plant species or ecological processes and services would both benefit from better understanding of the impacts of disturbance on soil microorganisms and soil fertility.     

Biochar soil amendments in prairie restorations do not interfere with benefits from inoculation with native arbuscular mycorrhizal fungi

Little of the historical extent of tallgrass prairie ecosystems remains in North America, and therefore there is strong interest in restoring prairies. However, slow‐growing prairie plants are initially weak competitors with the fast‐growing yet short‐lived weedy plant species that are typically abundant in recently established prairie restorations. One way to aid establishment of slow‐growing plant species is through adding soil amendments to prairie restorations before planting. Arbuscular mycorrhizal (AM) fungi form mutualisms with the roots of most terrestrial plants and are particularly important for the growth of slow‐growing prairie plant species. As prairie ecosystems are adapted to fires that leave biochar (charred organic material) in the soil, adding biochar as well as AM fungal strains from undisturbed remnant prairies into the soil of prairie restorations may improve restoration outcomes. Here, we test this prediction during the first four growing seasons of a prairie restoration. When prairie plant seedlings were inoculated prior to planting into the field with AM fungi derived from remnant prairies, that one‐time inoculation significantly increased growth of five of the nine tested plant species through at least two growing seasons. This long‐term benefit of AM fungal inoculation was unaffected by biochar addition to the soil. Biochar application rates of at least 10 tons/ha significantly decreased Coreopsis tripteris growth but acted synergistically with AM fungal inoculation to significantly improve survival of Schizachyrium scoparium. Overall, inoculation with native AM fungi can help promote prairie plant establishment, but concomitant use of biochar soil amendments had relatively little effect.     

Possible Mechanism for Spontaneous Establishment of Calluna vulgaris in a Recently Abandoned Agricultural Field

In Western Europe, arable lands have been abandoned to increase the area of nature, such as Calluna vulgaris –dominated heathlands. However, the growth conditions, e.g., nutrient availability and lack of a phenolics-rich organic layer, on ex-arable sandy soils differ markedly from those of heathland and will favor fast-growing plant species. Succession toward Calluna -dominated heathland is expected to take decades unless intensive restoration management is applied. Here, we report a possible mechanism to explain the occurrence of Calluna patches (0.7–2.0 m diameter) in a 10-year abandoned agricultural field within a dominant vegetation of grasses and forbs. All roots sampled from the Calluna patches were colonized by ericoid mycorrhizal (ERM) and other endomycorrhizal fungi. Both nitrogen mineralization of soil organic N and potential nitrogen mineralization (arginine ammonification) were much lower in soil under Calluna patches than in the rest of the ex-arable soil, although other soil characteristics did not differ. The nitrogen to phosphorus ratio in Calluna shoots was much greater than that in shoots of grasses and forbs, indicating that the latter were more N limited. The results indicate that the association with ERM fungi is probably providing the host competitive superiority for nitrogen even in a soil with low organic matter content. Our results suggest that the conversion from arable land into heathland may be accomplished by the immediate establishment of Calluna seedlings and ERM inoculum when agricultural activities are stopped. This needs to be tested in controlled experiments.     

Changes in soil microbial community structure and function following degradation in a temperate grassland

温带草原退化后土壤微生物群落结构和功能的变化 草原退化是草原生产力维持面临的一个重大挑战,这一过程显著影响着草原生态系统的能量流动和土壤养分变化过程,进而直接或间接地影响着土壤微生物。我们的研究目的首先是调查不同草原退化程度(即未退化、中度退化和严重退化)如何影响着内蒙古温带草原的土壤微生物组成、多样性和功能,其次是阐明哪些生物和非生物因素导致了这些变化。我们的研究主要通过高通量测序技术分析土壤微生物的群落组成,并且采用FAPROTAX工具和FUNGuild工具分别预测细菌群落和真菌群落的功能。研究发现：草原退化显著降低了土壤细菌的多样性,但对真菌多样性影响不大。地下生物量、土壤有机碳和总氮与细菌的多样性变化呈显著正相关关系。草原退化显著增加了绿弯菌门的相对丰度(由2.48%提高到8.40%),降低了厚壁菌门的相对丰度(由3.62%降低到1.08%)。其次,草原退化也显著增加了球囊菌门的相对丰度(从0.17%提高到1.53%),降低了担子菌门的相对丰度(从19.30%降低到4.83%)。致病菌的相对丰度在草原退化过程中显著下降。此外,草原退化对土壤细菌群落的功能有显著的影响,尤其是与土壤碳氮循环相关的土壤细菌群落。我们的结果表明,土壤细菌群落对草原退化的响应比真菌群落更敏感。     

热带珊瑚岛植物种植对土壤改良及其微生物群落形成的影响

植被及关联的土壤微生物对于维持热带珊瑚岛的生态系统功能和稳定性具有重要作用。采集了植物种植前的种植土和种植早期珊瑚砂土,以及栽植幼苗基质中的根际土和非根际土,利用扩增子测序的手段,分析其中的真菌和细菌的多样性、群落组成及变化。分析结果显示,种植土、幼苗基质中的非根际土和根际土可能是珊瑚砂土壤中微生物的重要来源,其中最主要的类群包括以担子菌门和接合菌门为代表的真菌,以及以变形菌门、酸杆菌门为代表的细菌。珊瑚砂土的真菌丰度（864.2±41.4,为每0.25 g土的物种数）显著低于来自苗基质的根际土（1086.1±64.3,P=0.014）和苗非根际土（1251.4±48.1,P < 0.001）;珊瑚砂土的细菌丰度与苗基质根际土和非根际土之间并没有显著性差异。通过对比种植土和植物种植后的珊瑚砂土的微生物群落β-多样性,也发现植物种植对真菌和细菌类群组成产生了影响;主要类群接合菌门真菌相对丰度从0.2%增加到17.4%,而伞菌纲真菌的相对丰度从20.8%下降到0.9%,β-变形菌纲细菌的相对丰度从17.7%下降到0.1%。研究结果启示,珊瑚砂土壤微生物的组成并非是对不同来源微生物进行简单的集合,其中生活史与植物关系密切的微生物类群,目前还未在珊瑚砂土壤中表现出优势分布;相反,一些在植物根际和非根际土中较少出现的微生物,在珊瑚砂土壤中则广为存在,从而说明土壤微生物群落恢复过程的复杂性。     

Successional dynamics of soil fungal diversity along a restoration chronosequence post‐coal mining

Soil disruption from open‐cut mining practices can adversely impact microbial communities and the ecosystem services that they mediate. Despite this, assessment of impacts of soil disruption, and the subsequent recovery of microbial communities is rarely studied. Monitoring of ecological restoration success on mine sites has traditionally focused on vegetation; however, most plants rely, at least in part, on associations with soil fungi for enhanced nutrient and water acquisition. Here, we used high‐throughput phylogenetic marker gene sequencing to characterize the diversity of soil fungal communities along a restoration chronosequence ranging from 3 to 23 years at a rehabilitated mine site. We used nonmined analogue sites as a baseline for comparative purposes and examined the associations of soil fungal communities with soil physicochemical and aboveground vegetation variables. Fungal richness on rehabilitated sites was significantly larger than on nonmined sites, suggesting that mixing of topsoil during stockpiling resulted in a composite microbial community. Fungal community composition was significantly influenced by edaphic variables and the length of rehabilitation, with mined sites becoming more similar to nonmined sites over time. Fungal populations associated with ectomycorrhizae were relatively more abundant than those associated with arbuscular mycorrhizae and declined in response to disturbance, but recovered over time on the woody dominated sites indicating a strong coupling of these fungi with aboveground vegetation. Our data indicate that soil fungal diversity is a useful bioindicator of soil restoration in mined sites and may complement more traditional vegetation‐based surveys.     

Growth Characteristics and Enzyme Activity in Batrachochytrium dendrobatidis Isolates

Eighty soil samples were collected from various sites of Bahrain and screened for presence of keratinophilic fungi using hair baiting techniques for isolation. Thirty-six isolates were recovered and identified. The cultures were identified using macro- and micromorphological features. Their identification was also confirmed by the BLAST search of sequences of ITS1-5.8S-ITS2 rDNA region against the NCBI/Gene bank data and compared with deposited sequences for confirmation. Eight species of five genera were isolated viz. Aphanoascus fulvuscence (8.75%), Aphanoascus punsolae (20.00%), Chrysosporium indicum (2.50%), Chrysosporium tropicum (2.50%), Chrysosporium zonatum (3.75%), Spiromastix warcupii (1.25%), Microsporum gypseum (3.75%), and Trichophyton mentagrophytes (2.50%). In conclusion, our study indicates that keratinophilic fungi do occur in the various soils of Bahrain. Moreover, the narrow diversity and low density of keratinophilic fungi in the investigated soils is expected and is emblematic to other hot arid environments.     

Diversity of facultatively anaerobic microscopic mycelial fungi in soils

The numbers of microscopic fungi isolated from soil samples after anaerobic incubation varied from tens to several hundreds of CFU per one gram of soil; a total of 30 species was found. This group is composed primarily of mitotic fungi of the ascomycete affinity belonging to the orders Hypocreales (Fusarium solani, F. oxysporum, Fusarium sp., Clonostachys grammicospora, C. rosea, Acremonium sp., Gliocladium penicilloides, Trichoderma aureoviride, T. harzianum, T. polysporum, T. viride, T. koningii, Lecanicillum lecanii, and Tolypocladium inflatum) and Eurotiales (Aspergillus terreus, A. niger, and Paecilomyces lilacimus), as well as to the phylum Zygomycota, to the order Mucorales (Actinomucor elegans, Absidia glauca, Mucor circinelloides, M. hiemalis, M. racemosus, Mucor sp., Rhizopus oryzae, Zygorrhynchus moelleri, Z. heterogamus, and Umbelopsis isabellina) and the order Mortierellales (Mortierella sp.). As much as 10–30% of the total amount of fungal mycelium remains viable for a long time (one month) under anaerobic conditions.     

丛枝菌根真菌与深色有隔内生真菌生态修复功能与作用

生态修复是目前全球关注的热点问题,如何增加植被的覆盖度及生态修复效率是目前研究的重点。丛枝菌根真菌(arbuscular mycorrhiza fungi,AMF)和深色有隔内生真菌(dark septate endophyte,DSE)均是自然界植物根际分布广泛的一类内生真菌,均能与植物形成菌根共生体,具有一定的促进植物生长、抵抗逆境及修复污染土壤等功能与作用,在生态修复中具有广泛的应用潜力。本文综述了AMF及DSE两种微生物的功能、作用及其在生态修复应用中的研究进展,并进一步对AMF和DSE在生态修复中存在的问题和前景进行展望。     

Possible role of soil microorganisms in aggregation in soils

In many soils, roots and fungal hyphae, especially those of vesicular arbuscular mycorrhizal (VAM) fungi, stabilize macroaggregates (>250 μm diameter); organic residues, bacteria, polysaccharides and inorganic materials stabilize microaggregates (<250 μm). This review discusses the factors (including other organisms) which affect VAM hyphae and their extracellular polysaccharides in soil, and the subsequent effect on stability of aggregates. The review also discusses the possible role of other organisms, including ectomycorrhizal fungi, in the stability of soil, and suggests future research.     

东北红松纯林菌根外生菌根真菌群落与环境因子的相关性

外生菌根是木本植物根系与真菌形成的共生结构,外生菌根真菌在红松等外生菌根树种的定植与森林生态系统的保持方面起到至关重要的作用。明确菌根系统内外生菌根真菌群落组成是揭示菌根共生机制的前提条件。本研究利用Illumina Hiseq测序平台对生长季内红松纯林内根围土壤及菌根样品ITS2区进行高通量测序,分析其外生菌根真菌群落结构随季节的变化规律,同时通过统计学的方法分析了红松根系微生态中外生菌根真菌群落结构组成变化与其他生物因素、非生物因素的相关性。结果如下：（1）从6月份到10月份,5个月的菌根样品测序共得到741个真菌OTUs,利用FUNGuild数据库分析,其中85个OTUs归类为外生菌根真菌,优势属（相对丰度>5）为蜡壳菌属Sebacina、乳牛肝菌属Suillus、Meliniomyces、红菇属Russula、棉革菌属Tomentella、须腹菌属Rhizopogon和缘腺革菌属Amphinema。6月份菌根中外生菌根真菌的多样性最大,显著高于其他月份。（2）红松林外生菌根真菌群落组成受到土壤pH、有效磷含量、有效钾含量和土壤有效氮含量的影响,它们与外生菌根真菌优势属相对丰度呈现正相关或负相关。（3）根围土壤内真菌是影响红松根系外生菌根真菌相对丰度的另一重要因素,其中,包括普可尼亚属Pochonia、产丝齿菌属Hyphodontia、镰刀菌属Fusarium、Collembolispora、枝穗霉属Clonostachys、Apodus、鹅膏属Amanita在内的土壤真菌与根内外生菌根真菌的相对丰度呈线性关系。同时,超过85%的根内外生菌根真菌与同一取样地的土壤共有,可以认为侵染和扩散是红松根内外生菌根真菌群落形成的主要方式,同时兼有植物根系的选择,因为根内并不包括所有土壤中存在的外生菌根真菌,其机制需要进一步人工模拟试验验证。     

A study on micro-fungi in arid areas: Notes on soil saprotrophs and animal opportunistic pathogens

ABSTRACT

Soil fungi were studied in three desert areas in Namibia with the aim of identifying saprotrophic microorganisms associated with animal communities as opportunistic pathogens. The extremely arid environment of the Naukluft Desert Park was found to be more selective for soil fungi, whereas the soils of Etosha Pan, with seasonal wet areas, and the mobile dunes of Sossousvlei, which absorb atmospheric moisture at night by virtue of their proximity to the sea, host saprotrophic microorganisms and potential and/or opportunistic pathogens.     

Quantitative investigations on nematode-trapping hyphomycetes from woodland soils

Abstract From three different woodland types in Berlin (West) (poor sandy pine forest, mesotrophic beech forest and a sporadically inundated river bank), nematode-destroying hyphomycetes were isolated using the sprinkled plates method. 16.4% of the plates yielded isolates, one predacious fungus per 8 g of fresh soil. The fungi obtained belonged to ten species out of four different genera. The highest number of isolates was obtained from the beech forest, while the lowland forest yielded the highest number of species but the lowest amount of isolates. The differences between the various soil types are discussed. The results indicated that attempt to quantify the nematode-destroying hyphomycetes may be successful.     

青藏高原高寒草地AM真菌分布及其对近自然恢复的生态作用

超载过牧以及全球气候变化等导致大部分青藏高原高寒草地呈现持续退化态势。青藏高原高寒草地退化致使地上植物群落逐渐发生更替,地下土壤微生物群落多样性和丰富度发生改变。本文旨在探析青藏高原高寒草地丛枝菌根（arbuscular mycorrhizal,AM）真菌的分布特征、对近自然恢复的生理生态效应及其作用机制。青藏高原高寒草地中已报道4目14属61种AM真菌,约占已知AM真菌物种的20%。高寒草地禾本科植物根围AM真菌物种丰度最高,而莎草科植物根围AM真菌孢子密度最高。3种高寒草地植被类型中,高寒草原AM真菌丰度最高（33种）,山地灌丛草原次之（32种）,高寒草甸最低（22种）。高寒草原以光壁无梗囊霉Acaulospora laevis和闪亮和平囊霉Pacispora scintillans为优势种,山地灌丛草原以摩西斗管囊霉Funneliformis mosseae为优势种,高寒草甸以光壁无梗囊霉A. laevis、近明球囊霉Claroideoglomus claroideum和闪亮和平囊霉P. scintillans为优势种。高寒草地土著AM真菌与植物构建的菌根网络可以通过调节营养元素吸收、分配,促进植物建植和生长;但是毒杂草入侵可以改变土著AM真菌物种多样性和菌根网络,限制本地植被的实际生态位扩张。退化高寒草地中,AM真菌群落具有高的环境适应性和恢复力,其不仅调控地上植物群落建植和多样性,同时AM真菌建植也增加了代谢产物-球囊霉素相关土壤蛋白产生,进而协同改善地下土壤微生态系统,为退化高寒草地早期植被恢复塑造土壤生境。因此,AM真菌在退化高寒草地近自然恢复中具有较大的应用潜力。     

辽宁省土壤中暗色丝孢菌初查

从辽宁省不同生态环境中采集土壤样品28份,采用土壤平板法和稀释平板法,从中分离出45个暗色丝孢菌分离物。经鉴定分属于18属,26种。其中,海芋平脐蠕孢Bipolaris alocasiae、长梗腐质霉Humicola longistipes为新种;其他24种为国内已知种。研究过的标本（干制培养物）及活菌种保存在山东农业大学植物病理学标本室（HSAUP）,等模式标本保存在中国科学院真菌标本馆（HMAS）。     

Keratinolytic and keratinophilic fungi in the soils of Papua New Guinea

A study was made of soil samples collected during an expedition to the Highlands of Papua New Guinea. Fungi were isolated from the samples by the method of hair baiting (To-Ka-Va). Of the 33 species isolated, about half showed keratinolytic activity. Such activity is previously unreported for Mucor hiemalis f. hiemalis, Myrothecium roridum, Paecilomyces carneus, P. marquandii, Penicillium brevicompactum, Rhinocladiella mansonii and Verticillium lecanii. The species most active keratinolytically were Chrysosporium an. Arthroderma cuniculi, C. an. A. curreyi, C. indicum, Myceliophthora vellerea and Trichophyton ajelloi. The spectrum of fungi with keratinolytic activity isolated from the different sites differed considerably according to the frequency of use by man, heaviest use being correlated with greatest activity. The pH of the soil (varying from 5.8–7.5) had little influence on the type of such fungi isolated.     

棒孢拟青霉和丽玛利亚霉鲜红变种——中国2个丝状真菌新记录种

从采自我国山西、辽宁及广西的土样中分离获得了棒孢拟青霉(Paecilomyces clavisporus Hammill)和丽玛利亚霉鲜红变种[Mariannaea elegans(Corda)Samson var.punicea Samson]2个丝状真菌新记录种,并详细描述了这2种菌的形态学特征。