Population and peopling in the Mediterranean world

The Mediterranean region, formed with parts of Africa, Asia and Europe, is unique in our planet. It has received the passage and settlement of various hominid migrations from the Pleistocene and the three main races have met there since remote ages. Its archeology and history are better known than those in other regions of the world. The area, with a fairly uniform climate, was unified for several centuries, under Roman Empire which restricted the access to outside populations, favouring relationships among inside ones. Genetic evidence suggets that most of the evolutionary history of humans is quite recent and interwined. A paradigm can be found in Mediterranean populations. The understanding on what happened in this region will be decisive to know the evolution of the entire human species. An overall genetic study on the whole Mediterranean region, with its European part as its Asian and African ones has not been carried out yet and such work should be drawn up soon.     

The Nature of Shifting Cultivation: Stories of Harmony, Degradation, and Redemption

Shifting cultivation is identified as a major cause of tropical deforestation. Sources that recount such impacts routinely employ an Eden-lost narrative structure that represents shifting cultivators as having their relatively harmonious human-environment relationships disrupted by various forces. While such disruptions lead to land degradation, official development institutions via research into alternatives to such agriculture offer redemption, or the return to relative ecological harmony. This Edenic narrative vehicle allows shifting cultivators to be represented as primitives in need of modernization, yet it also more commonly allows a sympathetic representation as holders of valuable, albeit threatened, indigenous knowledge that can be applied to the development of solutions. However, embedded within both hostile and sympathetic accounts from both scientific and policy sources are cultural images that persist as a legacy of colonialist assumptions of social evolution and cultural hierarchy.     

Invertase Development in Storage Tissue 4Beta vulgaris; its Nature, Extent, and Location

The development of invertase activity in storage tissue disksof Beta vulgaris during ageing under aseptic conditions hasbeen studied. The invertase is formed initially in the cellwall and subsequently appears in the cytoplasm. In disks upto 1.0 mm thick, invertase is formed throughout the tissue,but in thicker disks only limited activity appears in the interior.In disks up to 1.0 mm thick, treatment with ethyl acetate priorto enzyme assay increases the measured activity by rendering‘inaccessible’ soluble invertase available to sucrosein the assay medium. In thicker disks, pretreatment with ethylacetate also increases the measured invertase activity by facilitatingsucrose penetration to the centre of the tissue. Osmotic shockaffects invertase activity in the same manner as ethyl acetatetreatment. The significance of these results is discussed inrelation to the induction and development of invertase activityin the disk and in the cell.     

微生物在水环境污染物降解中的应用

每年有大量来自工业、农业、养殖业和城市污水处理厂的废水被排入到水环境中,因此,地球上的水环境面临大量来自生活废水、工农业废水、非法排放的废水及其它废水的污染物质(如抗生素、杀虫剂,除草剂、烃等)的严重挑战,特别是近年来随着集约化养殖的发展,废水污染问题日益突出,并且随着分析手段的进步,能够检测到被排入水环境中的化学污染物质也越来越多,这些化学污染物对水环境中的生物产生有害影响.但是,微生物在污染控制上具有许多重要的作用.因此,本文对微生物在水环境污染物降解中的应用进行了评论.结果表明微生物主要是应用在水产养殖水中,而在其它的水体系(如河、湖、海)的应用较少.     

Provinciality of the Mediterranean lower Jurassic brachiopod fauna: Causes and plate-tectonic implications

The composition of 23 “NW European” and “Mediterranean” Lower Jurassic (Pliensbachian) brachiopod faunas is compared at the species level. On the basis of this quantitative approach, the two “provinces” can be delimited more sharply than by earlier qualitative studies. In the author's opinion the most reasonable cause of the provinciality is as follows: in the Middle Triassic a segment of the European shelf became rifted, detached and drifted toward the open Tethys ocean. Being isolated, the brachiopods of this province could produce evolutionary lineages different from the European ones. If the presence of this contiguous and separate Triassic—Jurassic microcontinent characterized by Mediterranean brachiopod faunas is assumed, this factor should be borne in mind in the reconstructions concerning the closure of the Tethys (= Alpine orogeny).     

From Marine Metacommunities to Meta-ecosystems: Examining the Nature,Scale and Significance of Resource Flows in Benthic Marine Environments

Ecosystems - The metacommunity framework has been readily applied to coastal benthic marine environments to examine how larval dispersal affects the dynamics of patchily distributed communities....     

Modeling Microbially Induced Carbon Degradation in Redox-Stratified Subsurface Environments: Concepts and Open Questions

The degradation of organic matter, including organic contaminants, in subsurface environments is controlled by the abundances and functional capabilities of the resident microorganisms. As a consequence, modeling approaches simulating the fate of organics and related changes in redox conditions have to account for the effects of microbial activity on the degradation kinetics, as well as for the spatial and temporal distributions of the chemical species (e.g., terminal electron acceptors, nutrients or toxic substances) that control microbial activity. The present paper reviews the principal modeling approaches that are used to simulate the degradation of organic matter in water-saturated porous media. Special attention is devoted to modeling the bioavailability of chemical substrates of microbial reactions, and the sequential occurrence of terminal electron accepting pathways. While the various model approaches found in the literature are capable of reproducing field data sets from various environmental settings, they are rarely compared in terms of performance and predictive ability. Most approaches incorporate simplifications or empirical rate laws, which limit their range of application. Thus, there remains a need for further development of more general, process-based modeling concepts to represent microbially mediated reactive processes.     

Transformation and Deoxyribonucleic Acid Size: Extent of Degradation on Entry Varies with Size of Donor

The fate of label introduced as donor deoxyribonucleic acid (DNA) into competent cells of Diplococcus pneumoniae was determined immediately after entry at 25 C, as a function of the size of the donor DNA. Part of the label is found to be acid soluble, part has been incorporated into chromosomal DNA, apparently through reincorporation of degraded donor DNA, and part is found in single strands of length smaller than that of the input donor DNA strands. The last fraction apparently constitutes the precursor for integration of intact donor genetic markers and is referred to as the intact fraction. For large donor DNA the intact fraction contains over 80% of the total intracellular label, but the median strand length has been reduced to 2.2 x 10(6) daltons. For small donor molecules (1 x 10(5) to 6 x 10(5) daltons per strand) the fraction intact increases with donor size from 10 to 50% of the total intracellular label, and the median strand length of this fraction is half that of the donor strands. By combining these results with earlier data on the size dependence of the yield of transformants per unit of total intracellular donor label, we have calculated the probability that a marker in the intact fraction will be integrated, as a function of the length of the donor strand after entry. This probability has a linear dependence on strand length for activities below 40% of maximum, and extrapolates to zero activity at 77,000 daltons per strand.     

The Nature and Extent of Mutational Pleiotropy in Gene Expression of Male Drosophila serrata

The nature and extent of mutational pleiotropy remain largely unknown, despite the central role that pleiotropy plays in many areas of biology, including human disease, agricultural production, and evolution. Here, we investigate the variation in 11,604 gene expression traits among 41 mutation accumulation (MA) lines of Drosophila serrata. We first confirmed that these expression phenotypes were heritable, detecting genetic variation in 96% of them in an outbred, natural population of D. serrata. Among the MA lines, 3385 (29%) of expression traits were variable, with a mean mutational heritability of 0.0005. In most traits, variation was generated by mutations of relatively small phenotypic effect; putative mutations with effects of greater than one phenotypic standard deviation were observed for only 8% of traits. With most (71%) traits unaffected by any mutation, our data provide no support for universal pleiotropy. We further characterized mutational pleiotropy in the 3385 variable traits, using sets of 5, randomly assigned, traits. Covariance among traits chosen at random with respect to their biological function is expected only if pleiotropy is extensive. Taking an analytical approach in which the variance unique to each trait in the random 5-trait sets was partitioned from variance shared among traits, we detected significant (at 5% false discovery rate) mutational covariance in 21% of sets. This frequency of statistically supported covariance implied that at least some mutations must pleiotropically affect a substantial number of traits (>70; 0.6% of all measured traits).     

Assessment of Fluoride in Three Selected Polluted Environments along the Egyptian Mediterranean Sea: Effects on Local Populations

Fluoride ion (F^?) is a relevant component of concern due to its potential toxicity for humankind. This study clarifies the status of F^? for human health in three polluted regions along the Egyptian Mediterranean Sea coast, and determining its contents in seawater and different fish tissues (muscle, skin, brain, and bone). Fluoride ion concentrations in different fish tissues had a descending trend of brain > skin > muscle > bone with averages of 26.8 ± 26.0, 24.8 ± 6.5, 12.7 ± 2.3, and 9.0 ± 1.6 μg F^?/g wet wt, respectively. The bioconcentration factor for fluoride ion in different fish tissues was determined and multivariate analyses were conducted. The human health hazard assessment from fish consumption and seawater contact using hazard quotient (HQ) and ingestion and dermal absorption dose of whole body for different ages of females and males as well as the specified body parts (legs, arms, and hands) were calculated. Although the calculated daily intake values for ingestion of fish in the present study were lower than some established tolerable daily intake values, their hazard quotients were within 1 ≥ HQ < 10 and may reflect a possible fluoride adverse effect on human health from the consumption of the gathered fish species.     

Rediscovering Nature in Everyday Settings: Or How to Create Healthy Environments and Healthy People

It is estimated that half of the world’s population now live in urban environments. Urban living necessitates a removal from nature, yet evidence indicates that contact with nature is beneficial for human health. In fact, everyday urban places, such as where people live, study, and work, provide opportunities to bring nature back into cities to contribute to positive, healthy environments for people and to foster the human–nature connection. The inclusion of more nature in cities could have additional environmental benefits, such as habitat provision and improving the environmental performance of built environments. In the context of climate change, outcomes such as these assume further importance. This article explores how common urban places can foster links between people and nature, and generate positive health and well-being outcomes. We achieve this by exploring nature in the everyday settings of schools and residential housing.     

Nature and Extent of Genetic Diversity of Dengue Viruses Determined by 454 Pyrosequencing

Dengue virus (DENV) populations are characteristically highly diverse. Regular lineage extinction and replacement is an important dynamic DENV feature, and most DENV lineage turnover events are associated with increased incidence of disease. The role of genetic diversity in DENV lineage extinctions is not understood. We investigated the nature and extent of genetic diversity in the envelope (E) gene of DENV serotype 1 representing different lineages histories. A region of the DENV genome spanning the E gene was amplified and sequenced by Roche/454 pyrosequencing. The pyrosequencing results identified distinct sub-populations (haplotypes) for each DENV-1 E gene. A phylogenetic tree was constructed with the consensus DENV-1 E gene nucleotide sequences, and the sequences of each constructed haplotype showed that the haplotypes segregated with the Sanger consensus sequence of the population from which they were drawn. Haplotypes determined through pyrosequencing identified a recombinant DENV genome that could not be identified through Sanger sequencing. Nucleotide level sequence diversities of DENV-1 populations determined from SNP analysis were very low, estimated from 0.009–0.01. There were also no stop codon, frameshift or non-frameshift mutations observed in the E genes of any lineage. No significant correlations between the accumulation of deleterious mutations or increasing genetic diversity and lineage extinction were observed (p>0.5). Although our hypothesis that accumulation of deleterious mutations over time led to the extinction and replacement of DENV lineages was ultimately not supported by the data, our data does highlight the significant technical issues that must be resolved in the way in which population diversity is measured for DENV and other viruses. The results provide an insight into the within-population genetic structure and diversity of DENV-1 populations.     

Land use changes and associated environmental impacts on the Mediterranean shallow Lake Stymfalia, Greece

Land cover and land use changes affect ecological landscape functions and processes. Land use changes mainly caused by human activities, is a common reason for wetlands degradation worldwide. Lake Stymfalia, located at Peloponnese, southern Greece, is an ancient wetland with a great ecological value. Lake Stymfalia has been severely degraded and transformed during the past 60 years due to agricultural activities in the surrounding areas and watercourses alterations. In this context, we investigated the land cover/ use changes and the role of the reed beds in the terrestrialization process of this shallow wetland. This particular effort utilized remotely sensed data and Geographical Information Systems (GIS) techniques to estimate land use alterations for the period 1945–1996. Patch related landscape indices were generated to analyze impacts on landscape features. Spatial and thematic information concerning the surface area and the major land cover types of the lake for years 1945, 1960, 1972, 1987, 1992, and 1996 was obtained from aerial photographs and land surveys of the area, and was stored in the GIS database. The 1996 map was ground verified, corrected and updated to 2004 conditions. From the spatio-temporal analysis of the stored data, a permanent decrease of the open water surface has been observed between the years 1945 and 1996. The results indicated that the reed beds expanded dramatically, increasing by 89.3%, and is the predominant aquatic vegetation of the whole wetland. Open water areas and wet meadows decreased by 53.7 and 96.5% respectively. Landscape analyses and, in particular, the use of selected landscape metrics, proved useful for detecting and quantitatively characterising dynamic ecological processes. As land cover/use analysis of the wetland has shown much serious environmental degradation, conservation measures should be undertaken urgently.     

The Impact of Land Abandonment on Species Richness and Abundance in the Mediterranean Basin: A Meta-Analysis

Land abandonment is common in the Mediterranean Basin, a global biodiversity hotspot, but little is known about its impacts on biodiversity. To upscale existing case-study insights to the Pan-Mediterranean level, we conducted a meta-analysis of the effects of land abandonment on plant and animal species richness and abundance in agroforestry, arable land, pastures, and permanent crops of the Mediterranean Basin. In particular, we investigated (1) which taxonomic groups (arthropods, birds, lichen, vascular plants) are more affected by land abandonment; (2) at which spatial and temporal scales the effect of land abandonment on species richness and abundance is pronounced; (3) whether previous land use and current protected area status affect the magnitude of changes in the number and abundance of species; and (4) how prevailing landforms and climate modify the impacts of land abandonment. After identifying 1240 potential studies, 154 cases from 51 studies that offered comparisons of species richness and abundance and had results relevant to our four areas of investigation were selected for meta-analysis. Results are that land abandonment showed slightly increased (effect size  = 0.2109, P<0.0001) plant and animal species richness and abundance overall, though results were heterogeneous, with differences in effect size between taxa, spatial-temporal scales, land uses, landforms, and climate. In conclusion, there is no “one-size-fits-all” conservation approach that applies to the diverse contexts of land abandonment in the Mediterranean Basin. Instead, conservation policies should strive to increase awareness of this heterogeneity and the potential trade-offs after abandonment. The strong role of factors at the farm and landscape scales that was revealed by the analysis indicates that purposeful management at these scales can have a powerful impact on biodiversity.     

Structural Degradation in Mediterranean Sea Food Webs: Testing Ecological Hypotheses Using Stochastic and Mass-Balance Modelling

Human-mediated disturbances such as fishing, habitat modification, and pollution have resulted in significant shifts in species composition and abundance in marine ecosystems which translate into degradation of food-web structure. Here, we used a comparative ecological modelling approach and data from two food webs (North-Central Adriatic and South Catalan Sea) and two time periods (mid-late 1970s and 1990s) in the Mediterranean Sea to evaluate how changes in species composition and biomass have affected food-web properties and the extent of ecosystem degradation. We assembled species lists and ecological information for both regions and time periods into stochastic structural and mass-balance food-web models, and compared the outcomes of 22 food-web properties. Our results show strong similarities in structural food-web properties between the North-Central Adriatic and South Catalan Seas indicating similar ecosystem structure and levels of ecological degradation between regions and time periods. In contrast, a comparison with other published marine food webs (Caribbean, Benguela, and US continental shelf) suggested that Mediterranean webs are in an advanced state of ecological degradation. This was reflected by lower trophic height, linkage density, connectance, omnivory, species involved in looping, trophic chain length and fraction of biomass at higher trophic levels, as well as higher generality and fraction of biomass at lower trophic levels. An analysis of robustness to simulated species extinction revealed lower robustness to species removals in Mediterranean webs and corroborated their advanced state of degradation. Importantly, the two modelling approaches used delivered comparable results suggesting that they both capture fundamental information about how food webs are structured. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

The Interrelationships of Land Plants and the Nature of the Ancestral Embryophyte

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