Sex and aging: A comparison between two phenoptotic phenomena

Phenoptosis is a phenomenon that is genetically programmed and favored by natural selection, and that determines death or increased risk of death (fitness reduction) for the individual that manifests it. Aging, here defined as agerelated progressive mortality increase in the wild, if programmed and favored by natural selection, falls within the definition of phenoptosis. Sexual reproduction (sex), as for the involved individuals determines fitness reduction and, in some species, even certain death, also falls within the definition of phenoptosis. In this review, sex and aging are analyzed as phenoptotic phenomena, and the similarities between them are investigated. In particular, from a theoretical standpoint, the genes that cause and regulate these phenomena: (i) require analyses that consider both individual and supra-individual selection because they are harmful in terms of individual selection, but advantageous (that is, favored by natural selection) in particular conditions of supra-individual selection; (ii) determine a higher velocity of and greater opportunities for evolution and, therefore, greater evolutionary potential (evolvability); (iii) are advantageous under ecological conditions of K-selection and with finite populations; (iv) are disadvantageous (that is, not favored by natural selection) under ecological conditions of r-selection and with unlimited populations; (v) are not advantageous in all ecological conditions and, so, species that reproduce asexually or species that do not age are predicted and exist.     

Collagen aggregation phenomena

Three processes by which tropocollagen units associate to yield highly specific aggregates have been examined. From the temperature coefficients of the amounts aggregated it is concluded that the complex “native” aggregation is endothermic, whereas both end-to-end and lateral aggregation are exothermic. These results combined with additional information lead to the conclusion that “native” aggregation is an entropy-driven process in which hydrophobic bonding plays the dominant role. In contrast the reactions producing the lateral aggregate and the aggregate in which end-to-end bonding is dominant are electrostatically governed.     

Projections as representations of phenomena

This paper presents an epistemological examination of phenomena, that is, of the observables of empirical science. The starting point is the premise that “Nature is a Hilbert space over the real field, and it consists of invariants, I, which are not directly accessible”. The second premise is that “real manifestations (i.e. observables, phenomena, or appearances) are projections of I”. From these premises on the genesis of phenomena by the measurement process, we show how a representation of the inaccessible invariant can be mathematically synthesized from measures on the projections. Actually, knowledge of the projections is not sufficient. One must have measures on the (measuring) system producing the projections, that is, on the projectors. The projectors belong to the dual space of the projections, and it is possible to synthesize a simple representation which is also the best approximation to I. Furthermore, the duality condition imposed upon the measuring process assures that the morphology of the relationships between phenomena is given by an elegant, bilinear, metric calculus. This calculus is, in fact, the phenomenological calculus developed in earlier papers in this journal. Among the examples analyzed from the viewpoint of projection are the following: tomography, quantum mechanics, stoichiometry, and enzyme function.     

Undergraduates' understanding of cardiovascular phenomena

Undergraduates students in 12 courses at 8 different institutions were surveyed to determine the prevalence of 13 different misconceptions (conceptual difficulties) about cardiovascular function. The prevalence of these misconceptions ranged from 20 to 81% and, for each misconception, was consistent across the different student populations. We also obtained explanations for the students' answers either as free responses or with follow-up multiple-choice questions. These results suggest that students have a number of underlying conceptual difficulties about cardiovascular phenomena. One possible source of some misconceptions is the students' inability to apply simple general models to specific cardiovascular phenomena. Some implications of these results for teachers of physiology are discussed.     

Mechanistic models of population-level phenomena

This paper is about mechanisms and models, and how they interact. In part, it is a response to recent discussion in philosophy of biology regarding whether natural selection is a mechanism. We suggest that this debate is indicative of a more general problem that occurs when scientists produce mechanistic models of populations and their behaviour. We can make sense of claims that there are mechanisms that drive population-level phenomena such as macroeconomics, natural selection, ecology, and epidemiology. But talk of mechanisms and mechanistic explanation evokes objects with well-defined and localisable parts which interact in discrete ways, while models of populations include parts and interactions that are neither local nor discrete in any actual populations. This apparent tension can be resolved by carefully distinguishing between the properties of a model and those of the system it represents. To this end, we provide an analysis that recognises the flexible relationship between a mechanistic model and its target system. In turn, this reveals a surprising feature of mechanistic representation and explanation: it can occur even when there is a mismatch between the mechanism of the model and that of its target. Our analysis reframes the debate, providing an alternative way to interpret scientists’ “mechanism-talk”, which initially motivated the issue. We suggest that the relevant question is not whether any population-level phenomenon such as natural selection is a mechanism, but whether it can be usefully modelled as though it were a particular type of mechanism.     

Functional imaging of mucociliary phenomena

We present a technique for the investigation of mucociliary phenomena on trachea explants under conditions resembling those in the respiratory tract. Using an enhanced reflection contrast, we detect simultaneously the wave-like modulation of the mucus surface by the underlying ciliary activity and the transport of particles embedded in the mucus layer. Digital recordings taken at a speed of 500 frames per second are analyzed by a set of refined data processing algorithms. The simultaneously extracted data include not only ciliary beat frequency and its surface distribution, but also space-time structure of the mucociliary wave field, wave velocity and mucus transport velocity. Furthermore, we propose the analysis of the space and time evolution of the phase of the mucociliary oscillations to be the most direct way to visualize the coordination of the cilia. In particular, this analysis indicates that the synchronization is restricted to patches with varying directions of wave propagation, but the transport direction is strongly correlated with the mean direction of waves. The capabilities of the technique and of the data-processing algorithms are documented by characteristic data obtained from mammalian and avine tracheae.     

Spatial autocorrelation of ecological phenomena

Ecological variables often fluctuate synchronously over wide geographical areas, a phenomenon known as spatial autocorrelation or spatial synchrony. Development of statistical approaches designed to test for spatial autocorrelation combined with the increasing accessibility of long-term, large-scale ecological datasets are now making it possible to document the patterns and understand the causes of spatial synchrony at scales that were previously intractable. These developments promise to foster significant future advances in understanding population regulation, metapopulation dynamics and other areas of population ecology.