Imprint of post-glacial history in a narrowly distributed endemic spruce, Picea alcoquiana, in central Japan observed in nuclear microsatellites and organelle DNA markers

Aim We aim to infer the post‐glacial history of the narrowly distributed endemic spruce Picea alcoquiana in Japan, and to assess the hypothesis that the existing narrow natural range of the species has resulted from the diminution of the past natural range since the last glacial period. Location Mountainous forests in central Honshu Island in Japan. Methods We assessed the geographical patterns of genetic variation across nine populations of P. alcoquiana across its natural range using five nuclear microsatellites and polymerase chain reaction–restriction fragment length polymorphism markers for chloroplast (cp) and mitochondrial (mt) DNA. This study focuses on the genetic differentiation between northern peripherally isolated and southern core populations within the natural range of the species in central Honshu. In addition, based on diagnostic morphological traits of the cone, we used reliable macrofossil evidence to gain further insight into the past natural range of the species. Results Picea alcoquiana shows a level of genetic differentiation among populations (Φ_ST = 0.082) that was higher than the levels observed in nuclear microsatellites for other anemophilous and widespread tree species in Japan. A notable finding for the nuclear microsatellites was the loss of rare alleles and strong evidence of a recent bottleneck in the peripherally isolated populations. Analysis of molecular variance in cpDNA and mtDNA markers showed an absence of genetic differentiation between the peripherally isolated and core populations. Macrofossil evidence indicated that the past natural range of the species extended to a lower elevation and c. 135 km north of the existing peripherally isolated populations during the last glacial period (c. 28,000 yr bp ). Main conclusions During the last glacial period, P. alcoquiana had a wider natural range in which the peripherally isolated and core populations could have been geographically continuous with each other, and effective gene flow by means of pollen and seeds might have occurred. The recent bottleneck and consequent loss of rare alleles in the peripherally isolated populations might have evolved during the diminution and retreat of the northern part of the past natural range southwards to the core area and during the subsequent separation of the peripherally isolated populations from the core area since the last glacial period.     

Grasshopper (Orthoptera: Acrididae) communities respond to fire,bison grazing and weather in North American tallgrass prairie: a long-term study

Because both intrinsic and extrinsic factors influence insect population dynamics, operating at a range of temporal and spatial scales, it is difficult to assess their contributions. Long-term studies are ideal for assessing the relative contributions of multiple factors to abundance and community dynamics. Using data spanning 25 years, we investigate the contributions of weather at annual and decadal scales, fire return interval, and grazing by bison to understand the dynamics of abundance and community composition in grasshopper assemblages from North American continental grassland. Each of these three primary drivers of grassland ecosystem dynamics affects grasshopper population and community dynamics. Negative feedbacks in abundances, as expected for regulated populations, were observed for all feeding guilds of grasshoppers. Abundance of grasshoppers did not vary in response to frequency of prescribed burns at the site. Among watersheds that varied with respect to controlled spring burns and grazing by bison, species composition of grasshopper assemblages responded significantly to both after 25 years. However, after more than 20 years of fire and grazing treatments, the number of years since the last fire was more important than the managed long-term fire frequency per se. Yearly shifts in species composition (1983–2005), examined using non-metric multidimensional scaling and fourth-corner analysis, were best explained by local weather events occurring early in grasshopper life cycles. Large-scale patterns were represented by the Palmer Drought Severity Index and the North Atlantic Oscillation (NAO). The NAO was significantly correlated with annual mean frequencies of grasshoppers, especially for forb- and mixed-feeding species. Primary grassland drivers—fire, grazing and weather—contributing both intrinsic and extrinsic influences modulate long-term fluctuations in grasshopper abundances and community taxonomic composition. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

TESTING MODELS OF MIGRATION AND ISOLATION AMONG POPULATIONS OF CHINOOK SALMON (ONCORHYNCHUS TSCHAWYTSCHA)

The chinook salmon (Oncorhynchus tschawytscha) is a behaviorally, morphologically, and ecologically variable species distributed over a large geographic range. Although previous genetic surveys have revealed considerable genetic differences among populations with different life history types and from different major river drainages, it is not clear to what degree these genetically distinct populations are connected by low levels of gene flow. The work described in this paper addresses this question by surveying DNA restriction site variation at six nuclear genes from nine populations encompassing most of the species's North American range, and then attempting to fit the patterns of variation observed at these genes to five different evolutionary models using computer simulations of the coalescent process. Two commonly used constant population size models, one hypothesizing no migration among populations and one hypothesizing equal rates of migration among populations, were found to be statistically inconsistent with the observed patterns of variation. The other three models, which involved either recent divergence among populations coupled with large changes in populations size, unequal migration rates among populations, or selection, were all found to be consistent with the observed patterns of variation. Assuming selective neutrality, these results suggest that either the populations have all descended from a common ancestral population within the last ~50,000 years and have all suffered large declines in effective population size since that time, or that they have a more ancient divergence time but are connected by low levels of gene flow. These conclusions rest on the assumption of selective neutrality. With the methods employed, it was not possible to simultaneously test hypotheses of both selective neutrality and population structure.     

Postglacial expansion and genome subdivision in the European grasshopper Chorthippus parallelus

A noncoding nuclear DNA marker sequence (Cpnl-1) was used to investigate subdivision in the grasshopper Chorthippus parallelus and deduce postglacial expansion patterns across its species range in Europe. Investigation of the spatial distribution of 71 Cpnl-1 haplotypes and estimation of levels of genetic differentiation (K_ST values) between populations and geographic regions provided evidence for subdivision of C. parallelus into at least five major geographic regions and indicated that the French form of C. parallelus originated after range expansion from a Balkan refugium, Further evidence for subdivision of C. parallelus between Italy and northern Europe suggests that the Alps may have formed a significant barrier to gene flow in this grasshopper.     

Scale‐dependent thermal tolerance variation in Australian mountain grasshoppers

Physiological variation among and within species is thought to play a key role in determining distribution patterns across environmental gradients. We tested inter‐ and intraspecific variation in cold and heat tolerances for three grasshopper species (genus Kosciuscola) with overlapping elevation distributions, across their respective ranges in the Australian mountains. Of the three cold tolerance traits measured, the critical thermal minimum was the only trait to vary among species, with greater cold tolerance associated with a distribution extending to a higher elevation. Cold tolerance limits were regularly exceeded in exposed microhabitats, suggesting a role for cold adaptation in structuring species distribution patterns. In contrast to cold tolerance, heat tolerance variation was primarily partitioned within species. For two species, populations from treeless alpine habitat were more heat tolerant than their lower‐elevation counterparts, supporting recent models that suggest greater exposure to temperature extremes at higher elevations. These contrasting patterns of physiological variation among and within species emphasise the importance of considering variation within species when attempting to understand how species distributions are affected by thermal extremes.     

Epizootics of the entomopathogenic fungus,Entomophaga grylli (Entomophthorales: Entomophthoraceae), in a grasshopper population in Northwest China

Plagues caused by locusts and grasshoppers have led to severe crop damage and great economic loss in many countries. Nevertheless, populations of these pests are often suppressed by naturally occurring predators and disease. Among such natural control factors, the entomopathogenic fungus, Entomophaga grylli, can markedly disrupt the dynamics of grasshopper populations. However, there are few reports of epizootics of this entomopathogenic fungus occurring in consecutive years. Here we report on a consecutive 2-year field survey of E. grylli epizootics in Xinjiang, Northwest China. E. grylli were observed to infect at least four species of grasshopper, Calliptamus italicus, Gomphocerus sibiricus, Chorthippus sp., and Stauroderus scalaris. This is the first record of infection of the last two species by this pathogen. The highest infection rates at the two study sites (Chonghuer and Jiadengyu, Altay Prefecture) were ≥50%, observed in mid-July 2011, and the lowest rate was >16% in early summer. The density of infected grasshoppers was positively correlated with the density of total grasshoppers collected (r?=?0.981). Therefore, E. grylli is an important natural factor regulating the dynamics of grasshopper populations in regions that are not subjected to artificial treatments.     

The role of disjunction and postglacial population expansion on phylogeographical history and genetic diversity of the circumboreal plant Chamaedaphne calyculata

In the last decade a number of studies has illustrated quite different phylogeographical patterns amongst plants with a northern present‐day geographical distribution, spanning the entire circumboreal region and/or circumarctic region and southern mountains. These works, employing several marker systems, have brought to light the complex evolutionary histories of this group. Here I focus on one circumboreal plant species, Chamaedaphne calyculata (leatherleaf), to unravel its phylogeographical history and patterns of genetic diversity across its geographical range. A survey of 29 populations with combined analyses of chloroplast DNA (cpDNA), internal transcribed spacer (ITS) and AFLP markers revealed structuring into two groups: Eurasian/north‐western North American, and north‐eastern North American. The present geographical distribution of C. calyculata has resulted from colonization from two putative refugial areas: east Beringia and south‐eastern North America. The variation of chloroplast DNA (cpDNA) and ITS sequences strongly indicated that the evolutionary histories of the Eurasian/north‐western North American and the north‐eastern North American populations were independent of each other because of a geographical disjunction in the distribution area and ice‐sheet history between north‐eastern and north‐western North America. Mismatch analysis using ITS confirmed that the present‐day population structure is the result of rapid expansion, probably since the last glacial maximum. The AFLP data revealed low genetic diversity of C. calyculata (P = 19.5%, H = 0.085) over the whole geographical range, and there was no evidence of loss of genetic diversity within populations in the continuous range, either at the margins or in formerly glaciated and nonglaciated regions. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 105 , 761–775.     

Sunshine versus gold: The effect of population age on genetic structure of an invasive mosquito

The genetic diversity and structure of invasive species are affected by the time since invasion, but it is not well understood how. We compare likely the oldest populations of Aedes aegypti in continental North America with some of the newest to illuminate the range of genetic diversity and structure that can be found within the invasive range of this important disease vector. Aedes aegypti populations in Florida have probably persisted since the 1600‐1700s, while populations in southern California derive from new invasions that occurred in the last 10 years. For this comparison, we genotyped 1,193 individuals from 28 sites at 12 highly variable microsatellites and a subset of these individuals at 23,961 single nucleotide polymorphisms (SNPs). This is the largest sample analyzed for genetic structure for either region, and it doubles the number of southern California populations previously analyzed. As predicted, the older populations (Florida) showed fewer indicators of recent founder effect and bottlenecks; in particular, these populations have dramatically higher genetic diversity and lower genetic structure. Geographic distance and driving distance were not good predictors of genetic distance in either region, especially southern California. Additionally, southern California had higher levels of genetic differentiation than any comparably sized documented region throughout the worldwide distribution of the species. Although population age and demographic history are likely driving these differences, differences in climate and transportation practices could also play a role.     

Comparative multilocus phylogeography of two Palaearctic spruce bark beetles: influence of contrasting ecological strategies on genetic variation

While phylogeographic patterns of organisms are often interpreted through past environmental disturbances, mediated by climate changes, and geographic barriers, they may also be strongly influenced by species‐specific traits. To investigate the impact of such traits, we focused on two Eurasian spruce bark beetles that share a similar geographic distribution, but differ in their ecology and reproduction. Ips typographus is an aggressive tree‐killing species characterized by strong dispersal, whereas Dendroctonus micans is a discrete inbreeding species (sib mating is the rule), parasite of living trees and a poor disperser. We compared genetic variation between the two species over both beetles’ entire range in Eurasia with five independent gene fragments, to evaluate whether their intrinsic differences could have an influence over their phylogeographic patterns. We highlighted widely divergent patterns of genetic variation for the two species and argue that the difference is indeed largely compatible with their contrasting dispersal strategies and modes of reproduction. In addition, genetic structure in I. typographus divides European populations in a northern and a southern group, as was previously observed for its host plant, and suggests past allopatric divergence. A long divergence time was estimated between East Asian and other populations of both species, indicating their long‐standing presence in Eurasia, prior to the last glacial maximum. Finally, the strong population structure observed in D. micans for the mitochondrial locus provides insights into the recent colonization history of this species, from its native European range to regions where it was recently introduced.     

Population cytogenetics of Atractomorpha similis

Atractomorpha similis (2 n=19 ♂, 20 ♀) is a hygrophilous, tropical to temperate, species of pyrgomorphine grasshopper. We have sampled 70 populations covering the known distributional range of this species within Australia. All of them proved to be polymorphic for heterochromatin content as revealed by C-band analysis of embryonic neuroblasts. This polymorphism affects all ten members of the basic haploid set and includes variants involving differences in either the presence or the amount of procentric, interstitial and terminal C-blocks, as well as variation in the occurrence and nature of short arms on otherwise telocentric chromosomes. A majority of these variants appear to result from heterochromatin addition since the presumptive sibling, Atractomorpha australis, like other species of the genus that have been C-banded, is generally depauperate in heterochromatin. The net result of this extraordinary polymorphism is that each chromosome of A. similis exists in 10–50 distinct morphs. Consequently, there is a high level of chromosomal heterozygosity in all populations in terms of the number of heterozygous pairs present within a complement and an even higher level in terms of the total range of karyomorph patterns. There is also a wide range of total heterochromatin content, as measured by the percent of the total chromosome area occupied by C-band material, with values ranging from 13% to 44%. Specific marker chromosomes which predominate in particular geographical areas serve to distinguish six major cytotypes within A. similis. The two most southerly of these cytotypes show a narrower range of heterochromatin content but with higher values which reflect the more general occurrence of substantial terminal C-blocks within them. Finally, the populations from Fraser Island constitute a particularly distinctive cytotype characterised by the least number of morphs, the lowest level of chromosomal heterozygosity and a restricted range of heterochromatin content confined to the lower end of the known distributional spectrum.     

Impact of grasshoppers and an invasive grass on establishment and initial growth of restoration plant species

Exotic plant invasion can have dramatic impacts on native plants making restoration of native vegetation at invaded sites challenging. Though invasives may be superior competitors, it is possible their dominance could be enhanced by insect herbivores if native plants are preferred food sources. Insect herbivory can regulate plant populations, but little is known of its effects in restoration settings. There is a need to better understand relationships between insect herbivores and invasive plants with regard to their combined potential for impacting native plant establishment and restoration success. The objective of this study was to assess impacts of grasshopper herbivory and the invasive grass Bromus tectorum (cheatgrass) on mortality and growth of 17 native plant species used in restoration of critical sagebrush steppe ecosystems. Field and greenhouse experiments were conducted using moderate densities of a common, generalist pest grasshopper (Melanoplus bivittatus). Grasshoppers had stronger and more consistent impacts on native restoration plants in field and greenhouse studies than cheatgrass. After 6 weeks in the greenhouse, grasshoppers were associated with 36% mortality over all native restoration species compared to 2% when grasshoppers were absent. Herbivory was also associated with an approximately 50% decrease in native plant biomass. However, effects varied among species. Artemisia tridentata, Chrysothamnus viscidiflorus, and Coreopsis tinctoria were among the most negatively impacted, while Oenothera pallida, Pascopyrum smithii, and Leymus cinerus were unaffected. These findings suggest restoration species could be selected to more effectively establish and persist within cheatgrass infestations, particularly when grasshopper populations are forecasted to be high.     

Do different rates of gene flow underlie variation in phenotypic and phenological clines in a montane grasshopper community?

Species responses to environmental change are likely to depend on existing genetic and phenotypic variation, as well as evolutionary potential. A key challenge is to determine whether gene flow might facilitate or impede genomic divergence among populations responding to environmental change, and if emergent phenotypic variation is dependent on gene flow rates. A general expectation is that patterns of genetic differentiation in a set of codistributed species reflect differences in dispersal ability. In less dispersive species, we predict greater genetic divergence and reduced gene flow. This could lead to covariation in life‐history traits due to local adaptation, although plasticity or drift could mirror these patterns. We compare genome‐wide patterns of genetic structure in four phenotypically variable grasshopper species along a steep elevation gradient near Boulder, Colorado, and test the hypothesis that genomic differentiation is greater in short‐winged grasshopper species, and statistically associated with variation in growth, reproductive, and physiological traits along this gradient. In addition, we estimate rates of gene flow under competing demographic models, as well as potential gene flow through surveys of phenological overlap among populations within a species. All species exhibit genetic structure along the elevation gradient and limited gene flow. The most pronounced genetic divergence appears in short‐winged (less dispersive) species, which also exhibit less phenological overlap among populations. A high‐elevation population of the most widespread species, Melanoplus sanguinipes, appears to be a sink population derived from low elevation populations. While dispersal ability has a clear connection to the genetic structure in different species, genetic distance does not predict growth, reproductive, or physiological trait variation in any species, requiring further investigation to clearly link phenotypic divergence to local adaptation.     

Persistence of <Emphasis Type="Italic">Paranosema</Emphasis> (<Emphasis Type="Italic">Nosema</Emphasis>) <Emphasis Type="Italic">locustae</Emphasis> (Microsporidia: Nosematidae) among grasshopper (Orthoptera: Acrididae) populations in the Inner Mongolia Rangeland,China

Paranosema (Nosema) locustae Canning has persisted in grasshopper populations in the Inner Mongolia Rangeland since spore treatment was applied in 1993. In the treatment year, a 58.32–71.43% reduction of grasshoppers was recorded and 59.26–80.36% of surviving grasshoppers of various species were infected. In the years following application, prevalence of P. locustae varied from 13.65% to 60.71%, demonstrating that P. locustae remains in grasshopper populations for many years. Infection prevalence was more than 60.00% for Dasyhippus barbipes (F.-W.), Bryodema luctuosum luctuosoma (Stoll) and Angaracris barabensis (Pall.) in 1993 but was very variable, ranging from 20.00% to 60.71% over the subsequent nine years. Disease prevalence was 43.72–60.71% in 1993 and 1994 for Oedaleus asiaticus B.-Bienko and Myrmeleotettix palpalis (Zub.) but gradually declined to approximately 20%, where it remained. Persistence of P. locustae in grasshopper populations may be important in keeping densities below economic thresholds for a number of years after application. Handling Editor: Helen Roy.     

Concordant phylogeography and cryptic speciation in two Western Palaearctic oak gall parasitoid species complexes

Little is known about the evolutionary history of most complex multi‐trophic insect communities. Widespread species from different trophic levels might evolve in parallel, showing similar spatial patterns and either congruent temporal patterns (Contemporary Host‐tracking) or later divergence in higher trophic levels (Delayed Host‐tracking). Alternatively, host shifts by natural enemies among communities centred on different host resources could disrupt any common community phylogeographic pattern. We examined these alternative models using two Megastigmus parasitoid morphospecies associated with oak cynipid galls sampled throughout their Western Palaearctic distributions. Based on existing host cynipid data, a parallel evolution model predicts that eastern regions of the Western Palaearctic should contain ancestral populations with range expansions across Europe about 1.6 million years ago and deeper species‐level divergence at both 8–9 and 4–5 million years ago. Sequence data from mitochondrial cytochrome b and multiple nuclear genes showed similar phylogenetic patterns and revealed cryptic genetic species within both morphospecies, indicating greater diversity in these communities than previously thought. Phylogeographic divergence was apparent in most cryptic species between relatively stable, diverse, putatively ancestral populations in Asia Minor and the Middle East, and genetically depauperate, rapidly expanding populations in Europe, paralleling patterns in host gallwasp species. Mitochondrial and nuclear data also suggested that Europe may have been colonized multiple times from eastern source populations since the late Miocene. Temporal patterns of lineage divergence were congruent within and across trophic levels, supporting the Contemporary Host‐tracking Hypothesis for community evolution.     

Shaping forces modelling genetic variation patterns in the naturally fragmented forests of a South-American Beech

Fourteen natural populations of the South-American Beech Nothofagus obliqua at the Eastern naturally fragmented area of its distribution range were subjected to genetic analysis using genetic markers. The genetic characterization of the analysed populations suggested probable distinct glacial origin of populations at North and South of the distribution. Furthermore, based on the allelic richness parameter, relict areas could be postulated within each of the identified latitudinal group. Natural hybridisation processes with the close related and sympatric species Nothofagus nervosa were also identified as one of the shaping forces modelling genetic variation patterns of the species. While ancient hybridisation was postulated for the northern watersheds, current hybridisation processes were suggested within the southern ones. Genetic isolation was identified as the main cause promoting the high genetic differentiation found among populations within watersheds.     

The role of environment and core‐margin effects on range‐wide phenotypic variation in a montane grasshopper

The integration of genetic information with ecological and phenotypic data constitutes an effective approach to gain insight into the mechanisms determining interpopulation variability and the evolutionary processes underlying local adaptation and incipient speciation. Here, we use the Pyrenean Morales grasshopper (Chorthippus saulcyi moralesi) as study system to (i) analyse the relative role of genetic drift and selection in range‐wide patterns of phenotypic differentiation and (ii) identify the potential selective agents (environment, elevation) responsible for variation. We also test the hypothesis that (iii) the development of dispersal‐related traits is associated with different parameters related to population persistence/turnover, including habitat suitability stability over the last 120 000 years, distance to the species distribution core and population genetic variability. Our results indicate that selection shaped phenotypic differentiation across all the studied morphological traits (body size, forewing length and shape). Subsequent analyses revealed that among‐population differentiation in forewing length was significantly explained by a temperature gradient, suggesting an adaptive response to thermoregulation or flight performance under contrasting temperature regimes. We found support for our hypothesis predicting a positive association between the distance to the species distribution core and the development of dispersal‐related morphology, which suggests an increased dispersal capability in populations located at range edges that, in turn, exhibit lower levels of genetic variability. Overall, our results indicate that range‐wide patterns of phenotypic variation are partially explained by adaptation in response to local environmental conditions and differences in habitat persistence between core and peripheral populations.     

Patterns of trait divergence between populations of the meadow grasshopper, Chorthippus parallelus

Abstract.— To understand the process of speciation, we need to identify the evolutionary phenomena associated with divergence between populations of the same species. A powerful approach is to compare patterns of trait differences between populations differing in their evolutionary histories. A recent study of genetic divergence between populations of the meadow grasshopper Chorthippus parallelus , from different locations around Europe has allowed us to use this species to investigate which aspects of evolutionary history are associated with divergence in morphology and mating signals. During the last glaciation C. parallelus was confined to a number of refugia in southern Europe and has subsequently recolonized the northern part of the continent. This process of isolation followed by range expansion has created populations differing markedly in their evolutionary pasts–some have been isolated from one another for thousands of years, others have undergone repeated founder events, and others now live in sympatry with a closely related species. Using laboratory-reared grasshoppers from 12 different populations with a range of evolutionary histories, we quantify differences in morphology, chemical signals, and male calling-song. The observed pattern of divergence between these populations is then compared with the pattern predicted by hypotheses about what drives divergence. This comparison reveals that long periods in allopatry and processes associated with repeated founder events are both strongly associated with divergence.     

Life‐history predicts past and present population connectivity in two sympatric sea stars

Life‐history traits, especially the mode and duration of larval development, are expected to strongly influence the population connectivity and phylogeography of marine species. Comparative analysis of sympatric, closely related species with differing life histories provides the opportunity to specifically investigate these mechanisms of evolution but have been equivocal in this regard. Here, we sample two sympatric sea stars across the same geographic range in temperate waters of Australia. Using a combination of mitochondrial DNA sequences, nuclear DNA sequences, and microsatellite genotypes, we show that the benthic‐developing sea star, Parvulastra exigua, has lower levels of within‐ and among‐population genetic diversity, more inferred genetic clusters, and higher levels of hierarchical and pairwise population structure than Meridiastra calcar, a species with planktonic development. While both species have populations that have diverged since the middle of the second glacial period of the Pleistocene, most P. exigua populations have origins after the last glacial maxima (LGM), whereas most M. calcar populations diverged long before the LGM. Our results indicate that phylogenetic patterns of these two species are consistent with predicted dispersal abilities; the benthic‐developing P. exigua shows a pattern of extirpation during the LGM with subsequent recolonization, whereas the planktonic‐developing M. calcar shows a pattern of persistence and isolation during the LGM with subsequent post‐Pleistocene introgression.     

Genetic consequences of postglacial range expansion in two codistributed rodents (genus Dipodomys) depend on ecology and genetic locus

How does range expansion affect genetic diversity in species with different ecologies, and do different types of genetic markers lead to different conclusions? We addressed these questions by assessing the genetic consequences of postglacial range expansion using mitochondrial DNA (mtDNA) and nuclear restriction site‐associated DNA (RAD) sequencing in two congeneric and codistributed rodents with different ecological characteristics: the desert kangaroo rat (Dipodomys deserti), a sand specialist, and the Merriam's kangaroo rat (Dipodomys merriami), a substrate generalist. For each species, we compared genetic variation between populations that retained stable distributions throughout glacial periods and those inferred to have expanded since the last glacial maximum. Our results suggest that expanded populations of both species experienced a loss of private mtDNA haplotypes and differentiation among populations, as well as a loss of nuclear single‐nucleotide polymorphism (SNP) private alleles and polymorphic loci. However, only D. deserti experienced a loss of nucleotide diversity (both mtDNA and nuclear) and nuclear heterozygosity. For all indices of diversity and differentiation that showed reduced values in the expanded areas, D. deserti populations experienced a greater degree of loss than did D. merriami populations. Additionally, patterns of loss in genetic diversity in expanded populations were substantially less extreme (by two orders of magnitude in some cases) for nuclear SNPs in both species compared to that observed for mitochondrial data. Our results demonstrate that ecological characteristics may play a role in determining genetic variation associated with range expansions, yet mtDNA diversity loss is not necessarily accompanied by a matched magnitude of loss in nuclear diversity.     

varver: a database of microsatellite variation in vertebrates

Understanding how genetic variation is maintained within a species is important in ecology, evolution, conservation and population genetics. Tremendous efforts have been made to evaluate the patterns of genetic variation in natural populations of various species. For this purpose, microsatellites have played a major role since the 1990s. Here we describe a comprehensive database, varver (Variation in Vertebrates) that provides complete information regarding microsatellite variation in natural populations of vertebrates. For each species, varver includes basic information of the species, a list of publications reporting the microsatellite variation, and tables of genetic variation within and between populations (heterozygosity and F_ST). The geographic location and rough sampling range are also shown for each sampled population. The database should be useful for researchers interested in not only specific species but also comparing multiple species. We discuss the utility of microsatellite data, particularly for meta‐analyses that involve multiple microsatellite loci from various species. We show that in such analyses, it is extremely important to correct for biases caused by differences in mutation rate, mainly due to repeat unit and number.