High bacterial diversity in nearshore and oceanic biofilms and their influence on larval settlement by Hydroides elegans (Polychaeta)

Settlement of many benthic marine invertebrates is stimulated by bacterial biofilms, although it is not known if patterns of settlement reflect microbial communities that are specific to discrete habitats. Here, we characterized the taxonomic and functional gene diversity (16S rRNA gene amplicon and metagenomic sequencing analyses), as well as the specific bacterial abundances, in biofilms from diverse nearby and distant locations, both inshore and offshore, and tested them for their ability to induce settlement of the biofouling tubeworm Hydroides elegans, an inhabitant of bays and harbours around the world. We found that compositions of the bacterial biofilms were site specific, with the greatest differences between inshore and offshore sites. Further, biofilms were highly diverse in their taxonomic and functional compositions across inshore sites, while relatively low diversity was found at offshore sites. Hydroides elegans settled on all biofilms tested, with settlement strongly correlated with bacterial abundance. Bacterial density in biofilms was positively correlated with biofilm age. Our results suggest that the localized distribution of H. elegans is not determined by ‘selection’ to locations by specific bacteria, but it is more likely linked to the prevailing local ecology and oceanographic features that affect the development of dense biofilms and the occurrence of larvae.     

Cycle of transformation of the spotted seal (<Emphasis Type="Italic">Phoca largha</Emphasis>, Pallas, 1811) onshore associations in Peter the Great Bay of the Sea of Japan

In Peter the Great Bay, the spotted Seal (Phoca largha) is closely connected with island haulout sites sites all year round and forms four types of onshore associations, preliminary, reproductive, molting, and rehabilitative. It has been found over long term studies that changes in these associations make up an annual cycle. The specific redistribution pattern of seals in the bay appears to be a result of consecutive transformation processes, viz., the break up of previous types of associations and the simultaneous formation of the following ones. The mechanisms underlying every type of onshore associations of spotted seals and the peculiarities of their functioning are discussed.     

Influence of habitat on grouper abundance in the Florida Keys, U.S.A.

There was a significant inshore to offshore pattern in grouper species composition and density on Florida Keys coral reefs. Red grouper Epinephelus morio and black grouper Mycteroperca bonaci were most abundant on inshore patch reefs. Graysby Cephalopholis cruentata was most abundant on offshore reef types. Density among sites ranged from 0 to 0·43, 0 to 0·26 and 0 to 1·23 100 m⁻² for red grouper, black grouper, and graysby, respectively. Grouper density exhibited no consistency among sites within similar reef types. The densities of red and black grouper were correlated significantly with either physical or biotic habitat parameters. Graysby were observed in microhabitats with whose benthic features differed significantly from the surrounding habitat. This species was observed in high-relief areas with significantly less octocoral species and colony densities. Larger graysby were observed in areas of higher relief and less octocorals than smaller graysby. Habitat was one of several important factors influencing the distribution of groupers among coral reefs types in the Florida Keys.     

Symbiodinium (Dinophyceae) community patterns in invertebrate hosts from inshore marginal reefs of the southern Great Barrier Reef,Australia

The broad range in physiological variation displayed by Symbiodinium spp. has proven imperative during periods of environmental change and contribute to the survival of their coral host. Characterizing how host and Symbiodinium community assemblages differ across environmentally distinct habitats provides useful information to predict how corals will respond to major environmental change. Despite the extensive characterizations of Symbiodinium diversity found amongst reef cnidarians on the Great Barrier Reef (GBR) substantial biogeographic gaps exist, especially across inshore habitats. Here, we investigate Symbiodinium community patterns in invertebrates from inshore and mid‐shelf reefs on the southern GBR, Australia. Dominant Symbiodinium types were characterized using denaturing gradient gel electrophoresis fingerprinting and sequencing of the ITS2 region of the ribosomal DNA. Twenty one genetically distinct Symbiodinium types including four novel types were identified from 321 reef‐invertebrate samples comprising three sub‐generic clades (A, C, and D). A range of host genera harbored C22a, which is normally rare or absent from inshore or low latitude reefs in the GBR. Multivariate analysis showed that host identity and sea surface temperature best explained the variation in symbiont communities across sites. Patterns of changes in Symbiodinium community assemblage over small geographic distances (100s of kilometers or less) indicate the likelihood that shifts in Symbiodinium distributions and associated host populations, may occur in response to future climate change impacting the GBR.     

The novel use of pop‐off satellite tags (PSATs) to investigate the migratory behaviour of European sea bass Dicentrarchus labrax

A total of 12 adult European sea bass Dicentrarchus labrax were tagged with pop‐off satellite archival tags (PSAT) in Irish coastal waters and in offshore waters in the north‐east Celtic Sea between 2015 and 2016. Archived data were successfully recovered from five of the 12 tags deployed, three from fish released in inshore Irish waters and two from fish released offshore in the eastern Celtic Sea. All three fish tagged in inshore waters were found to undertake migrations into the open ocean coinciding with the spawning period. These fish also exhibited fidelity to inshore sites post‐migration, returning to the same general location (within c. 73 km, which is roughly the predicted mean accuracy of the method) of their original release site. Although the number of tracks obtained here was limited, some degree of aggregation between inshore and offshore tagged fish in the eastern Celtic Sea was noted during the expected spawning period suggesting PSATs can provide new information on specific spawning locations of European sea bass.     

Mating system drives negative associations between morphological features in <Emphasis Type="Italic">Schistosomatidae</Emphasis>

Background  

Sexual morphological features are known to be associated with the mating systems of several animal groups. However, it has been suggested that morphological features other than sexual characteristics could also be constrained by the mating system as a consequence of negative associations. Schistosomatidae are parasitic organisms that vary in mating system and can thus be used to explore links between the mating system and negative associations with morphological features.     

Plant communities on anthropogenically disturbed sites on the Chukotka Peninsula,Russia

Abstract. The vegetation of anthropogenically disturbed sites on the Chukotka Peninsula was investigated in 1986 and 1990. 102 sites had been bulldozed free of vegetation and soil between 2 and 20 yr ago and revegetated. Anthropogenic vegetation differs considerably from natural tundra. The total plant cover decreases, lichens are absent, moss composition changes, and graminoids predominate. A floristic classification was developed in order to describe the diversity of anthropogenic communities formed on these sites. Four associations were distinguished, all belonging to the alliance Poion glaucomalacanthae. An additional alliance characterized by Alopecurus alpinus is suggested for colder sites, but it has not yet been described. There is a correspondence of associations to substrate types. The association Phippsietum algidae was found only on loam substrate. The Artemisietum glomeratae and Saxifragetum punctatae are connected with rubble or gravel. The graminoid association Arctagrostietum arundinaceae is generally widespread in disturbed habitats and occurs on a variety of substrate types.     

Mycorrhizae between black locust (Robinia pseudoacacia) and Terfezia terfezioides

 In the present paper we report a mycorrhizal association between the hypogeous white truffle Terfezia terfezioides and the black locust (Robinia pseudoacacia) growing at various sites in Hungary. The mycorrhiza can be considered as being of the endo- or ectendo-type, since both mantle and Hartig net are absent. Morphological features of the septate hyphae colonizing cortical root cells were investigated by light microscopy on cryosections and on ultra-thin sections studied by transmission electron microscopy. Artificial infection of micropropagated black locust plantlets with the mycelium of the fungus was successful and had the same characteristics as naturally occurring associations. Accepted: 8 March 1996     

Genetic isolation between coastal and fishery‐impacted,offshore bottlenose dolphin (Tursiops spp.) populations

The identification of species and population boundaries is important in both evolutionary and conservation biology. In recent years, new population genetic and computational methods for estimating population parameters and testing hypotheses in a quantitative manner have emerged. Using a Bayesian framework and a quantitative model‐testing approach, we evaluated the species status and genetic connectedness of bottlenose dolphin (Tursiops spp.) populations off remote northwestern Australia, with a focus on pelagic ‘offshore’ dolphins subject to incidental capture in a trawl fishery. We analysed 71 dolphin samples from three sites beyond the 50 m depth contour (the inshore boundary of the fishery) and up to 170 km offshore, including incidentally caught and free‐ranging individuals associating with trawl vessels, and 273 dolphins sampled at 12 coastal sites inshore of the 50 m depth contour and within 10 km of the coast. Results from 19 nuclear microsatellite markers showed significant population structure between dolphins from within the fishery and coastal sites, but also among dolphins from coastal sites, identifying three coastal populations. Moreover, we found no current or historic gene flow into the offshore population in the region of the fishery, indicating a complete lack of recruitment from coastal sites. Mitochondrial DNA corroborated our findings of genetic isolation between dolphins from the offshore population and coastal sites. Most offshore individuals formed a monophyletic clade with common bottlenose dolphins (T. truncatus), while all 273 individuals sampled coastally formed a well‐supported clade of Indo‐Pacific bottlenose dolphins (T. aduncus). By including a quantitative modelling approach, our study explicitly took evolutionary processes into account for informing the conservation and management of protected species. As such, it may serve as a template for other, similarly inaccessible study populations.     

Inshore–offshore comparison of parasite infestation in Mytilus edulis: implications for open ocean aquaculture

Offshore production offers a new perspective for mussel aquaculture in the German Bight (North Sea) as no expansion is possible in the intertidal and subtidal zone of the Wadden Sea because of restrictions on the number of licenses. The development of offshore wind farms offers a unique opportunity because of the associated infrastructure. Service platforms, as well as the pylons themselves, offer perfect structures for mooring longlines and other culture units. One of the advantages of offshore culture may be a lower parasite load in offshore mussels compared with mussels produced under traditional inshore bottom culture. By sampling mussel spat from offshore suspended buoys or collectors, we simulated an offshore culture situation and compared parasite infestation rates with those in mussel spat obtained from suspended inshore buoys or collectors, in mussels from inshore benthic subtidal beds and from inshore benthic intertidal mussel beds. Mussels from offshore sites were free of trematodes and shell‐boring polychaetes. Parasitic copepods only occurred at a single offshore site, on a 20‐year‐old research platform, but not on buoys or collectors exposed for shorter time periods. All three monitored parasite taxa were present at all other sites. The highest prevalence was found for trematodes in inshore benthic intertidal mussels (78.7 ± 6.4%) and locally reached 100%. Through a variety of detrimental effects, trematodes, parasitic copepods and shell‐boring polychaetes are known to affect growth performance and product quality. We therefore propose that offshore mussel production could be a promising culture procedure because it seems to result in lower parasite burden than at traditional culture sites. Whether offshore production also results in better survival and growth, compared with inshore mussel culture on a commercial scale, needs to be investigated further.     

An assessment of below-ground ectomycorrhizal diversity of Abies alba miller in central Italy

ABSTRACT

In the framework of an ongoing study on the mycorrhizal associations of silver fir (Abies alba Mill., Pinaceae), we investigated the below-ground diversity of ectomycorrhizal communities in ten field sites located in five distinct natural A. alba woods, situated in the central part of the Apennine chain (Abruzzo region, Italy). Based on macro- and microscopic features, a total of 48 morphologically distinct ectomycorrhizal types have been classified on mature trees of A. alba, 37 of which are reported here for the first time. Ectomycorrhizal morphotypes were partially characterized, and their main features described; in many cases, the relevant fungal symbiont was identified at the level of species or genus. The number of distinguishable morphotypes per site was, with few exceptions, rather homogeneous, ranging from (5) 8 to 13 (20). Comparison of morphotype occurrence revealed that only few types were encountered in five or more sampled sites, whereas the vast majority of types was less frequent. The present study revealed a considerably high species diversity of the ectomycorrhizal symbionts of A. alba in a quite restricted area, thus raising interesting questions as to the ectomycorrhizal potential of this host tree over its entire, large natural range.     

Nearshore fish habitat utilization and species associations in Lake Opinicon (Ontario,Canada)

Synopsis The bulk of Lake Opinicon fish biomass is concentrated in the physically diverse inshore areas. Quantitative analysis of the community compositions of the various inshore habitat types (weedy inlets, sandy shallows, rock shelf, gravel, etc.) showed that each supported a characteristic assemblage of fishes with a relatively constant species and year class composition. This was maintained throughout the season despite a drop in fish biomass in late summer when there was a progressive movement into the offshore waters.Weedbed areas supported the highest biomass, and greatest species and year class diversity. Thereafter, in declining order of richness, were rocky and sandy areas. A few fish species were restricted to single habitat types, e.g.Notropis heterodon to inshore weedbeds.Lepomis macrochirus, the commonest species in the lake was, by contrast, versatile and occurred in all inshore habitats. Commonly the numbers of a species in a habitat differed between day and night. Significant diel movements between habitats characterized two nocturnal feedersPomoxis nigromaculatus andIctalurus nebulosus.     

Role of host genetics and heat‐tolerant algal symbionts in sustaining populations of the endangered coral Orbicella faveolata in the Florida Keys with ocean warming

Identifying which factors lead to coral bleaching resistance is a priority given the global decline of coral reefs with ocean warming. During the second year of back‐to‐back bleaching events in the Florida Keys in 2014 and 2015, we characterized key environmental and biological factors associated with bleaching resilience in the threatened reef‐building coral Orbicella faveolata. Ten reefs (five inshore, five offshore, 179 corals total) were sampled during bleaching (September 2015) and recovery (May 2016). Corals were genotyped with 2bRAD and profiled for algal symbiont abundance and type. O. faveolata at the inshore sites, despite higher temperatures, demonstrated significantly higher bleaching resistance and better recovery compared to offshore. The thermotolerant Durusdinium trenchii (formerly Symbiondinium trenchii) was the dominant endosymbiont type region‐wide during initial (78.0% of corals sampled) and final (77.2%) sampling; >90% of the nonbleached corals were dominated by D. trenchii. 2bRAD host genotyping found no genetic structure among reefs, but inshore sites showed a high level of clonality. While none of the measured environmental parameters were correlated with bleaching, 71% of variation in bleaching resistance and 73% of variation in the proportion of D. trenchii was attributable to differences between genets, highlighting the leading role of genetics in shaping natural bleaching patterns. Notably, D. trenchii was rarely dominant in O. faveolata from the Florida Keys in previous studies, even during bleaching. The region‐wide high abundance of D. trenchii was likely driven by repeated bleaching associated with the two warmest years on record for the Florida Keys (2014 and 2015). On inshore reefs in the Upper Florida Keys, O. faveolata was most abundant, had the highest bleaching resistance, and contained the most corals dominated by D. trenchii, illustrating a causal link between heat tolerance and ecosystem resilience with global change.     

Habitat heterogeneity drives bird species richness,nestedness and habitat selection by individual species in fluvial wetlands of the Paraná River,Argentina

We assessed the relationship between habitat heterogeneity and bird species richness and composition within wetlands of the floodplain of the Middle Paraná River, Argentina. Given the high habitat heterogeneity in these wetland systems, we sought to determine whether (i) there was a positive relationship between bird species richness and habitat heterogeneity; (ii) whether bird species richness was associated with certain types of individual habitat types; (iii) whether there was a pattern of species nestedness and turnover between sites as a function of habitat heterogeneity and composition, respectively; and (iv) whether individual species exhibited associations with habitat heterogeneity. Point counts were used to survey birds at 60 sites. We estimated the area of eight habitat types found within a 200‐m radius from the centre of each site and calculated number and Pielou's evenness of habitat types. These indices, together with area proportion of each habitat type, were used as explanatory factors of bird species richness in linear regression models. Habitat heterogeneity per se rather than area of individual habitat types was a more important predictor of species richness in these fluvial wetlands. Sites with more habitat types supported more bird species. Results showed that individual bird species were associated with different habitat types and, therefore, sites that contained more habitat types contained more species. Number of habitat types accounted for species nestedness between sites whereas composition of habitat types accounted for species turnover between sites. Results suggest that selection of heterogeneous sites by individual species could help explain the positive heterogeneity–species richness relationship. Our findings highlight the importance of habitat heterogeneity per se resulting from flood disturbances in maintaining bird richness in fluvial systems.     

Intra-annual tree-ring parameters indicating differences in drought stress of Pinus sylvestris forests within the Erico-Pinion in the Valais (Switzerland)

The effects of drought on radial growth of Pinussylvestris were investigated by comparing sites along hydricgradients. The gradients were located in Valais, an inner Alpine dry valley inSwitzerland, with each consisting of two site types, an extreme dry, xeric siteand a less dry, moderate site. The two site types were assigned tophytosociological associations within the Erico-Pinion. The investigationcovered the responses of tree growth to climate and particularly concentratedonintra-annual features of tree-rings such as earlywood/latewood ratio,intra-annual density fluctuations (IADFs) and traumatic tissues (TTs) as wellasthe sapwood/heartwood ratio. Radial growth differed according to the sitetypes,with trees on dry sites generally showing more missing rings, lower mean ringwidths, lower autocorrelation, higher mean sensitivities, reduced latewoodproportions and lower sapwood areas than trees on moderate sites. Therelationships between climate and tree-ring width, studied using responsefunction analysis, varied strongly between the site types within theErico-Pinion: Tree growth on dry sites was positively influenced byprecipitation at the end of the winter and the beginning of the growing seasonand negatively influenced by temperature in June. Winter precipitation waspositively correlated with radial growth, demonstrating its importance for thesuccessful root and shoot growth of the plants in spring on dry sites. Onmoderate sites, tree growth was less controlled by climate than by priorgrowth.The intra-annual density fluctuations (IADFs) provided a valuable means todifferentiate between the site types. In comparison to the moderate sites, thetrees on dry sites contained more IADFs, and their frequency was increased.Moist-cool conditions in the middle of the growing season were the triggeringfactor for IADFs on dry sites, whereas on moderate sites, there must be anadditional warm period in early summer in order to initiate IADFs. Most IADFswere found in latewood. We found no relationship between climate and traumatictissues (TTs). It is unclear whether other abiotic or biotic factors such aswounding by insects or birds are responsible for the development of TTs. Theassignment of these differences in tree growth behaviour to phytosociologicalassociations will enable a deeper understanding of the site types and willfacilitate the comparison with similar studies. Furthermore, the results can becombined with studies from other scientific disciplines concerning thesephytosociological associations. The ecological indicator values of thevegetation was a precise method for the distinction of site types.     

Examining water temperature proxies in<Emphasis Type="Italic"> Porites</Emphasis> corals from the Great Barrier Reef: a cross-shelf comparison

Cores from colonies of the coral species Porites sp. were collected from inshore, mid-shelf, and outer reef localities (central Great Barrier Reef) to test the robustness of the major elemental sea surface temperature (SST) proxies (B/Ca, Mg/Ca, Sr/Ca, U/Ca) to the influence of inshore processes. Time series analyses of Sr/Ca, U/Ca, B/Ca, and Mg/Ca are compared to sea surface temperature (SST) in order to provide calibrations for these elements. This study shows that there are significant variations between the corals with respect to some of the proxies. In some cases, variations of ~6 °C are observed for a single U/Ca value. This magnitude of variation is also seen in the Mg/Ca proxy and, to a smaller extent, in the B/Ca–SST relationship. In two of the corals, both Mg/Ca and U/Ca do not follow a seasonal signal. The Mg/Ca and U/Ca ratios for two inshore corals are significantly different than the offshore corals (lower and higher, respectively). The other two proxies (B/Ca and Sr/Ca) do not display any inshore vs. offshore variations except for one inshore site that did not have a clear seasonal signal for either of these proxies. The Sr/Ca–SST relationship is the most robust, with a temperature variation of ~2 °C for a single Sr/Ca value, which is within error for this technique.     

Establishment and growth characteristics of inshore populations of Ligusticum scoticum (Apiaceae)

Two inshore and four shore localitites of Ligusticum scoticum in C Norway were studied regarding the growth and reproductive characteristics of the L. scoticum individuals, and the vegetation and ecology of the sites. L. scoticum showed a similar growth and reproductive characteristics at the inshore and the shore localities. The inshore localities were judged as relatively persistent on their basis of growth and reproductive characteristics and population size, and one of the inshore localities has with certainty maintained itself for at least 20 years. We suggest the inshore populations have established from seeds dispersed from the shore by birds. There were large differences in vegetation and ecological variables and cover between the inshore and the shore localities. At the inshore localities vegetation contained a large number of dwarf shrub and moss species which were almost entirely absent from the shore. Due to various physiological properties L. scoticum has a relatively better competitive ability and is better adapted to grow on inshore localities in the northern part of its distribution area. At the inshore localities L. scoticum occurred at two types of localitites: summits and rocky walls. The absence of inshore localitites in areas where conditions for further dispersal would appear to be ideal, indicate that specific conditions are required for successful establishment of L. scoticum at inshore localities. We suggest that the occurrence of L. scoticum at the summits depends to some extent promoted by the influence of birds, e.g. by nutrients in the excrements. However in the case of rocky walls this is an unlikely explanation, because individuals are often scattered over many hundreds of metres.     

Habitat and conservation of the enigmatic damselfly <Emphasis Type="Italic">Ischnura pumilio</Emphasis>

Ischnura pumilio is threatened in the UK and its habitat requirements are not well understood. This study tests previously held notions of the habitat requirements of I. pumilio, investigates the features of a habitat influencing odonate species composition and provides recommendations for habitat creation and management for I. pumilio persistence. Thirty-one sites across south west England with past I. pumilio records were surveyed in 2006. Environmental variables and odonate abundance were recorded. Odonate species composition and I. pumilio abundance were related to environmental variables using multivariate techniques and GLM. Ischnura pumilio was found at a wide variety of habitat types; key habitat features were a muddy substrate with some open ground, turbid water, and low levels of shade. It was associated with increased structural diversity of vegetation away from water but low maximum height; characteristic of early-successional sites. The variables predicting odonate composition were location, shade, level of disturbance, water depth, and cover of terrestrial dwarf shrubs and Sphagnum species. Vegetation height and structure were also highly influential to at least 20 m from water. This study indicates that odonate habitat management should include adjacent hinterland. Management for I. pumilio may be complicated by the species’ use of two habitat types, each with associated problems. Furthermore, odonate species diversity was negatively associated with I. pumilio abundance, which may cause conflict of interest when managing habitats.     

Non‐actualistic wood‐fall associations from Middle Jurassic of Poland

Kaim, A. 2010: Non‐actualistic wood‐fall associations from Middle Jurassic of Poland. Lethaia, Vol. 44, pp. 109–124. The oldest modern‐type wood‐fall (sunken wood) associations so far known, were reported from the Upper Cretaceous of Japan. Here, four Middle Jurassic fossil associations collected from logs of sunken driftwood are documented from clay and silt sediments of the Cz?stochowa Ore‐bearing Clay Formation in Poland. The associations are composed of almost entirely different set of molluscs when compared to modern examples of wood‐fall communities. The exceptions are leptochitonid polyplacophorans and alleged cocculinoid gastropods, both of which are typical of modern sunken wood communities. It is hypothesized here that the associations represent Jurassic wood‐fall communities, which in contrast to their modern counterparts do not contain associated chemosymbiotic animals. This disparity results from the absence of xylophagain wood‐boring bivalves, which since the Cretaceous have produced significant amounts of faecal pellets, the decomposition of which increases the amount of sulphide around sunken driftwoods. The associations are considered as benthic rather than pseudoplanktonic because the wood logs were colonized only on their upper side, the abundant crinoids belong to benthic genera rather than to pseudoplanktonic, associations include numerous infaunal organisms, and there are too many clingers in the associations. The most typical and numerous members of the investigated associations are the gastropods Cosmocerithium and Astandes, both having uncertain taxonomic positions. It is suggested here that Cosmocerithium could be a grazer of bacterial mats, and represents an ecological counterpart of modern Provannidae. □chitons, cocculinoids, deep sea, ecology, evolution, Wood‐fall communities.