Interaction of U(VI) with Schizophyllum commune studied by microscopic and spectroscopic methods

Biosorption of actinides like uranium by fungal cells can play an important role in the mobilization or immobilization of these elements in nature. Sorption experiments of U(VI) with Schizophyllum commune at different initial uranium concentrations and varying metal speciation showed high uranium sorption capacities in the pH range of 4–7. A combination of high angle annular dark-field and scanning transmission electron microscopy analysis (HAADF-STEM) showed that living mycelium cells accumulate uranium at the cell wall and intracellular. For the first time the fluorescence properties of uranium accumulates were investigated by means of time-resolved laser-induced fluorescence spectroscopy (TRLFS) beside the determination of corresponding structural parameters using X-ray absorption fine structure spectroscopy (EXAFS). While the oxidation state of uranium remained unchanged during sorption, uranium speciation changed significantly. Extra and intracellular phosphate groups are mainly responsible for uranium binding. TRLFS spectra clearly show differences between the emission properties of dissolved species in the initial mineral medium and of uranium species on fungi. The latter were proved to be organic and inorganic uranyl phosphates formed depending on the uranyl initial concentration and in some cases on pH.     

U(VI) Reduction by Diverse Outer Surface c-Type Cytochromes of Geobacter sulfurreducens

Early studies with Geobacter sulfurreducens suggested that outer-surface c-type cytochromes might play a role in U(VI) reduction, but it has recently been suggested that there is substantial U(VI) reduction at the surface of the electrically conductive pili known as microbial nanowires. This phenomenon was further investigated. A strain of G. sulfurreducens, known as Aro-5, which produces pili with substantially reduced conductivity reduced U(VI) nearly as well as the wild type, as did a strain in which the gene for PilA, the structural pilin protein, was deleted. In order to reduce rates of U(VI) reduction to levels less than 20% of the wild-type rates, it was necessary to delete the genes for the five most abundant outer surface c-type cytochromes of G. sulfurreducens. X-ray absorption near-edge structure spectroscopy demonstrated that whereas 83% ± 10% of the uranium associated with wild-type cells correspond to U(IV) after 4 h of incubation, with the quintuple mutant, 89% ± 10% of uranium was U(VI). Transmission electron microscopy and X-ray energy dispersion spectroscopy revealed that wild-type cells did not precipitate uranium along pili as previously reported, but U(IV) was precipitated at the outer cell surface. These findings are consistent with those of previous studies, which have suggested that G. sulfurreducens requires outer-surface c-type cytochromes but not pili for the reduction of soluble extracellular electron acceptors.     

Remediation of uranium contaminated soils with bicarbonate extraction and microbial U(VI) reduction

Summary A process for concentrating uranium from contaminated soils in which the uranium is first extracted with bicarbonate and then the extracted uranium is precipitated with U(VI)-reducing microorganisms was evaluated for a variety of uranuum-contaminated soils. Bicarbonate (100 mM) extracted 20–94% of the uranium that was extracted with nitric acid. The U(VI)-reducing microorganism,Desulfovibrio desulfuricans reduced the U(VI) to U(IV) in the bicarbonate extracts. In some instances unidentified dissolved extracted components, presumably organics, gave the extract a yellow color and inhibited U(VI) reduction and/or the precipitation of U(IV). Removal of the dissolved yellow material with the addition of hydrogen peroxide alleviated this inhibition. These results demonstrate that bicarbonate extraction of uranium from soil followed by microbial U(VI) reduction might be an effective mechanism for concentrating uranium from some contaminated soils.     

Decrease of U(VI) Immobilization Capability of the Facultative Anaerobic Strain Paenibacillus sp. JG-TB8 under Anoxic Conditions Due to Strongly Reduced Phosphatase Activity

Interactions of a facultative anaerobic bacterial isolate named Paenibacillus sp. JG-TB8 with U(VI) were studied under oxic and anoxic conditions in order to assess the influence of the oxygen-dependent cell metabolism on microbial uranium mobilization and immobilization. We demonstrated that aerobically and anaerobically grown cells of Paenibacillus sp. JG-TB8 accumulate uranium from aqueous solutions under acidic conditions (pH 2 to 6), under oxic and anoxic conditions. A combination of spectroscopic and microscopic methods revealed that the speciation of U(VI) associated with the cells of the strain depend on the pH as well as on the aeration conditions. At pH 2 and pH 3, uranium was exclusively bound by organic phosphate groups provided by cellular components, independently on the aeration conditions. At higher pH values, a part (pH 4.5) or the total amount (pH 6) of the dissolved uranium was precipitated under oxic conditions in a meta-autunite-like uranyl phosphate mineral phase without supplying an additional organic phosphate substrate. In contrast to that, under anoxic conditions no mineral formation was observed at pH 4.5 and pH 6, which was clearly assigned to decreased orthophosphate release by the cells. This in turn was caused by a suppression of the indigenous phosphatase activity of the strain. The results demonstrate that changes in the metabolism of facultative anaerobic microorganisms caused by the presence or absence of oxygen can decisively influence U(VI) biomineralization.     

Complexation of U(VI) with highly phosphorylated protein, phosvitin: A vibrational spectroscopic approach

The complexation of uranium(VI) to variant functional groups of the highly phosphorylated protein phosvitin in aqueous solution was investigated by attenuated total reflection Fourier transform infrared (ATR FT-IR) spectroscopy. For the verification of the affinity of the actinyl ions to carboxyl and phosphate groups of the amino acid side chains, samples with different phosphate to uranium(VI) (P/U) ratios were investigated under denaturing conditions as well as in aqueous medium. From a comparative study with other heavy metal ions, i.e. Ba²⁺ and Pb²⁺, a strong coordination of U(VI) to carboxyl and phosphoryl groups can be derived. Furthermore, with increasing P/U ratios, a preferential binding of U(VI) to phosphoryl groups is indicated by the spectra of the batch samples. These findings are confirmed by spectra of aqueous U(VI)-phosvitin complexes reflecting an explicit coordination of the uranyl ions to phosphate groups at a high P/U ratio. Our study provides a deeper insight into the molecular interactions between actinyl ions and protein, and can be conferred to other basic biomolecules such as polysaccharides and nucleic acids.     

Spectroscopic investigations of U(VI) species sorbed by the green algae Chlorella vulgaris

The green alga Chlorella vulgaris has the ability to bind high amounts of uranium(VI) in the pH range from 3 to 6. At pH 3 up to 40% of the uranium are bound by the algal cells. The uranium removal is almost complete at pH 5 and 6 under the given experimental conditions. Scanning electron microscopy and laser-induced fluorescence spectroscopy were used to characterize uranyl species formed in the selected pH range. The micrographs show a regular distribution of U(VI) on the cell surface. Fluorescence spectroscopic investigations of formed algal uranyl complexes indicate that the binding of U(VI) to carboxyl groups plays a dominating role at pH 3, whereas a minor impact of organic phosphate compounds on the U(VI) sorption cannot be excluded. In contrast, at pH 5 and 6 the phosphate groups are mainly responsible for the removal and binding of U(VI) by formation of organic and/or inorganic uranyl phosphates.     

Thioredoxin Is Involved in U(VI) and Cr(VI) Reduction in Desulfovibrio desulfuricans G20

A transposon insertion mutant has been identified in a Desulfovibrio desulfuricans G20 mutant library that does not grow in the presence of 2 mM U(VI) in lactate-sulfate medium. This mutant has also been shown to be deficient in the ability to grow with 100 μM Cr(VI) and 20 mM As(V). Experiments with washed cells showed that this mutant had lost the ability to reduce U(VI) or Cr(VI), providing an explanation for the lower tolerance. A gene encoding a cyclic AMP (cAMP) receptor protein (CRP) was identified as the site of the transposon insertion. The remainder of the mre operon (metal reduction) contains genes encoding a thioredoxin, thioredoxin reductase, and an additional oxidoreductase whose substrate has not been predicted. Expression studies showed that in the mutant, the entire operon is downregulated, suggesting that the CRP may be involved in regulating expression of the whole operon. Exposure of the cells to U(VI) resulted in upregulation of the entire operon. CdCl₂, a specific inhibitor of thioredoxin activity, inhibits U(VI) reduction by washed cells and inhibits growth of cells in culture when U(VI) is present, confirming a role for thioredoxin in U(VI) reduction. The entire mre operon was cloned into Escherichia coli JM109 and the transformant developed increased U(VI) resistance and the ability to reduce U(VI) to U(IV). The oxidoreductase protein (MreG) from this operon was expressed and purified from E. coli. In the presence of thioredoxin, thioredoxin reductase, and NADPH, this protein was shown to reduce both U(VI) and Cr(VI), providing a mechanism for the cytoplasmic reduction of these metals.Previous studies have shown that soluble U(VI) can be reduced to the less-soluble U(IV) by pure cultures of bacteria (19, 20, 25). This process can be useful for in situ reduction, which results in uranium precipitation and therefore decreased mobility in groundwater (8, 33). Desulfovibrio desulfuricans G20 and Desfulovibrio vulgaris, neither of which can use U(VI) as a respiratory electron acceptor, have been shown to directly reduce U(VI) (19, 24), and the mechanism for U(VI) reduction has been addressed. A purified hydrogenase and periplasmic cytochrome c₃ from cell extracts of D. vulgaris will reduce U(VI) to U(IV) with hydrogen as the electron donor (19), suggesting that cytochrome c₃ of D. vulgaris may be directly involved in U(VI) reduction. When a cytochrome c₃ mutant of D. desulfuricans G20 was generated, it would not reduce U(VI) with H₂ as the electron donor (25); however, growth and U(VI) reduction occurred with lactate as the electron donor, although at lower rates than the wild type. Cytochrome c₃ was also found to be bound to insoluble U(IV), providing further evidence that this protein may be involved in U(VI) reduction (24). Electron microscopic images showed that reduced U(IV) was not only present in the periplasm but also in the cytoplasm (28), indicating that the periplasmic cytochrome c₃ may be only partially responsible for the in vivo U(VI) reduction process, with an additional pathway in the cytoplasm.In order to identify this additional mechanism, transposon insertion mutants were generated. This mutant library has also been used to identify genes involved in sediment fitness (10, 21) and syntrophic growth (16). In this study, the mutants were screened for loss of U(VI) resistance. A mutant was identified that was sensitive to U(VI) and would not grow with 2 mM U(VI) or reduce it in suspensions of washed cells. This was the only mutant identified that would not reduce U(VI) in both tests. The disrupted operon (named mre, for metal reduction) was characterized, and it is shown here that the mechanism for the U(VI) reduction process involves at least three genes, including thioredoxin, thioredoxin reductase, and an additional metal oxidoreductase. Some or all of these components are likely also responsible for Cr(VI) and As(V) reduction by this organism.     

Heterogeneous response to biostimulation for U(VI) reduction in replicated sediment microcosms

A field-scale experiment to assess biostimulation of uranium reduction is underway at the Natural and Accelerated Bioremediation Research Field Research Center (FRC) in Oak Ridge, Tennessee. To simulate the field experiment, we established replicate batch microcosms containing well-mixed contaminated sediment from a well within the FRC treatment zone, and we added an inoculum from a pilot-scale fluidized bed reactor representing the inoculum in the field experiment. After reduction of nitrate, both sulfate and soluble U(VI) concentration decreased. X-ray absorption near edge structure (XANES) spectroscopy confirmed formation of U(IV) in sediment from biostimulated microcosms, but did not detect reduction of solid-phase Fe(III). Two to three fragments dominated terminal restriction fragment length polymorphism (T-RFLP) profiles of the 16S rDNA gene. Comparison to a clone library indicated these fragments represented denitrifying organisms related to Acidovorax, and Acidovorax isolates from the inoculum were subsequently shown to reduce U(VI). Investigation using the T-RFLP Analysis Program (TAP T-RFLP) and chemical analyses detected the presence and activity of fermenting and sulfate-reducing bacteria after 2 weeks. These organisms likely contributed to uranium reduction. In some microcosms, soluble U(VI) concentration leveled off or rebounded, indicating microbial and/or mineralogical heterogeneity among samples. Sulfate, acetate, and ethanol were depleted only in those microcosms exhibiting a rebound in soluble U(VI). This suggests that rates of U(VI) desorption can exceed rates of U(VI) reduction when sulfate-reducing bacteria become substrate-limited. These observations underscore the importance of effective chemical delivery and the role of serial and parallel processes in uranium reduction.     

Biosorption of uranium(VI) by Aspergillus fumigatus

Aspergillus fumigatus removed uranium(VI) very rapidly and reached equilibrium within 1 h of contact of biomass with the aqueous metal solution. Biosorption data fitted to Langmuir model of isotherm and a maximum loading capacity of 423 mg U g^–1 dry wt was obtained. Distribution coefficient as high as 10,000 (mg U g^–1)/(mg U ml^–1) at a residual metal ion concentration of 19 mg l^–1 indicates its usefulness in removal of uranium(VI) from dilute waste streams. Optimum biosorption was seen at pH 5.0 and was independent of temperature (5–50°C ). Initial metal ion concentration significantly influenced uptake capacity which brought down % (w/w) uranium(VI) removal from 90 at 200 mg U l^–1 to 35 at 1000 mg U l^–1. Presence of 0.84 mmol Fe²⁺, Fe³⁺, Ca²⁺ and Zn²⁺ had no effect on uranium(VI) biosorption unlike Al³⁺ (0.84 mM) which was inhibitory.     

Addition of U(VI) to a uranium mining waste sample and resulting changes in the indigenous bacterial community

Based on 16S rRNA gene sequence retrieval, changes in natural bacterial community structure induced by addition of uranyl or sodium nitrate to soil samples from a uranium mining waste pile were investigated. Our results demonstrate that both treatments cause drastic changes in the bacterial composition of the studied samples, resulting in strongly reducing the originally predominant Acidobacteria and Alphaproteobacteria. The addition of sodium nitrate induced a strong propagation of particular denitrifying and nitrate‐reducing populations belonging to Actinobacteria and Bacteroidetes. The treatment of the samples with uranyl nitrate demonstrated that most part of the mentioned Bacteroidetes and some of the actinobacterial populations do not tolerate high U(VI) concentrations. Instead, a strong propagation of Pseudomonas spp. from the Gammaproteobacteria occurred. At the initial stages of incubation (4 weeks after the addition of uranyl nitrate) U(VI)‐reducing Geobacter spp. appeared. However, at the later stages of incubation (14 weeks after the beginning of supplementation) no Geobacter populations were detected anymore. Interestingly, different U‐sensitive Bacteroidetes and alphaproteobacterial populations propagated in the U(VI)‐treated samples at these late stages of incubation. That indicated that the added U(VI) was no longer bioavailable. The drastic changes in bacterial community structure of the soil samples from the depleted uranium mining waste caused by the addition of uranyl nitrate indicate that most of the established indigenous bacterial populations do not tolerate U(VI). By the treatment with uranyl nitrate they are replaced by particular uranium resistant nitrate‐reducing and denitrifying populations that potentially interact with the added radionuclide. On the other hand, the large number of dead uranium‐sensitive bacteria likely liberates phosphate‐rich and other biopolymers capable of binding U(VI). On the basis of our results, we propose that bacteria along with the abiotic soil components such as minerals and humic acids may influence the behaviour of U(VI) in nature.     

Microbial Community Changes in Response to Ethanol or Methanol Amendments for U(VI) Reduction

Microbial community responses to ethanol, methanol, and methanol plus humics amendments in relationship to U(VI) bioreduction were studied in laboratory microcosm experiments using sediments and ground water from a uranium-contaminated site in Oak Ridge, TN. The type of carbon source added, the duration of incubation, and the sampling site influenced the bacterial community structure upon incubation. Analysis of 16S rRNA gene clone libraries indicated that (i) bacterial communities found in ethanol- and methanol-amended samples with U(VI) reduction were similar due to the presence of Deltaproteobacteria and Betaproteobacteria (members of the families Burkholderiaceae, Comamonadaceae, Oxalobacteraceae, and Rhodocyclaceae); (ii) methanol-amended samples without U(VI) reduction exhibited the lowest diversity and the bacterial community contained 69.2 to 92.8% of the family Methylophilaceae; and (iii) the addition of humics resulted in an increase of phylogenetic diversity of Betaproteobacteria (Rodoferax, Polaromonas, Janthinobacterium, Methylophilales, and unclassified) and Firmicutes (Desulfosporosinus and Clostridium).The use of uranium in nuclear research, fuel production, and weapons manufacturing has resulted in environmental contamination at production, manufacturing, and storage sites throughout the United States. Although all of the common isotopes of uranium (²³⁸U [99.27%], ²³⁵U [0.72%], and ²³⁴U [0.005%]) are radioactive, it is the chemical toxicity of uranium that is usually of greatest concern when it is present as a contaminant.The U.S. Department of Energy (DOE) has ongoing efforts to identify and remediate contaminated areas under its control. Stimulating the in situ metabolism of microorganisms capable of reduction of U(VI) to U(IV), producing the insoluble mineral uraninite which precipitates and renders uranium immobile in ground water, has been proposed as an environmentally safe and a potentially cost-effective remediation method (37). Typically, an organic substrate is added to stimulate microbial growth and promote the development of anaerobic conditions, under which the reduction of U(VI) is favored (67). Various substrates (e.g., acetate, ethanol, glucose, and methanol) have been used either in the field or in microcosm studies, and most were capable of stimulating microbial U(VI) reduction (1, 8, 42, 43, 47, 60); however, the addition of methanol did not always result in U(VI) reduction (49). Many microorganisms are known to reduce U(VI) in pure culture, including a hyperthermophilic archaeon (28), a thermophilic bacterium Thermoterrabacterium ferrireducens (29), the mesophilic dissimilatory metal-reducing bacteria Geobacter and Shewanella (67) and Anaeromyxobacter dehalogenans (71), the sulfate-reducing bacterium Desulfovibrio sp. (61), and fermentative bacteria such as Clostridium spp. (20). These data suggest that U(VI) can be reduced by many microorganisms once suitable electron donors are available.The purpose of this study was to analyze the ability of various amendments to stimulate the reduction of U(VI) by the indigenous microbial communities found in subsurface sediments collected from a uranium-contaminated site. A previous publication from this project (42) gave a very limited analysis of the microbial community. Here we present a detailed phylogenetic analysis of the bacterial community structure and link community structure to capability of U(VI) reduction in sediments stimulated with ethanol and methanol. This study was designed to explore whether microbial communities that demonstrate U(VI) reduction after stimulation with different alcohols show a similar structure. Also, it was designed to detect differences between the methanol-stimulated communities that were capable of U(VI) reduction and those that were not capable of U(VI) reduction. Since humic substances have been reported to promote U(VI) reduction (10, 34), we also examined the effects of humics on the community structure and reduction of U(VI).     

Resistance of Solid-Phase U(VI) to Microbial Reduction during In Situ Bioremediation of Uranium-Contaminated Groundwater

Speciation of solid-phase uranium in uranium-contaminated subsurface sediments undergoing uranium bioremediation demonstrated that although microbial reduction of soluble U(VI) readily immobilized uranium as U(IV), a substantial portion of the U(VI) in the aquifer was strongly associated with the sediments and was not microbially reducible. These results have important implications for in situ uranium bioremediation strategies.     

Resistance of solid-phase U(VI) to microbial reduction during in situ bioremediation of uranium-contaminated groundwater

Speciation of solid-phase uranium in uranium-contaminated subsurface sediments undergoing uranium bioremediation demonstrated that although microbial reduction of soluble U(VI) readily immobilized uranium as U(IV), a substantial portion of the U(VI) in the aquifer was strongly associated with the sediments and was not microbially reducible. These results have important implications for in situ uranium bioremediation strategies.     

Global transcriptional profiling of Shewanella oneidensis MR-1 during Cr(VI) and U(VI) reduction

Whole-genome DNA microarrays were used to examine the gene expression profile of Shewanella oneidensis MR-1 during U(VI) and Cr(VI) reduction. The same control, cells pregrown with nitrate and incubated with no electron acceptor, was used for the two time points considered and for both metals. U(VI)-reducing conditions resulted in the upregulation (> or = 3-fold) of 121 genes, while 83 genes were upregulated under Cr(VI)-reducing conditions. A large fraction of the genes upregulated [34% for U(VI) and 29% for Cr(VI)] encode hypothetical proteins of unknown function. Genes encoding proteins known to reduce alternative electron acceptors [fumarate, dimethyl sulfoxide, Mn(IV), or soluble Fe(III)] were upregulated under both U(VI)- and Cr(VI)-reducing conditions. The involvement of these upregulated genes in the reduction of U(VI) and Cr(VI) was tested using mutants lacking one or several of the gene products. Mutant testing confirmed the involvement of several genes in the reduction of both metals: mtrA, mtrB, mtrC, and menC, all of which are involved in Fe(III) citrate reduction by MR-1. Genes encoding efflux pumps were upregulated under Cr(VI)- but not under U(VI)-reducing conditions. Genes encoding proteins associated with general (e.g., groL and dnaJ) and membrane (e.g., pspBC) stress were also upregulated, particularly under U(VI)-reducing conditions, pointing to membrane damage by the solid-phase reduced U(IV) and Cr(III) and/or the direct effect of the oxidized forms of the metals. This study sheds light on the multifaceted response of MR-1 to U(VI) and Cr(VI) under anaerobic conditions and suggests that the same electron transport pathway can be used for more than one electron acceptor.     

Modeling Reduction of Uranium U(VI) under Variable Sulfate Concentrations by Sulfate-Reducing Bacteria

The kinetics for the reduction of sulfate alone and for concurrent uranium [U(VI)] and sulfate reduction, by mixed and pure cultures of sulfate-reducing bacteria (SRB) at 21 ± 3°C were studied. The mixed culture contained the SRB Desulfovibrio vulgaris along with a Clostridium sp. determined via 16S ribosomal DNA analysis. The pure culture was Desulfovibrio desulfuricans (ATCC 7757). A zero-order model best fit the data for the reduction of sulfate from 0.1 to 10 mM. A lag time occurred below cell concentrations of 0.1 mg (dry weight) of cells/ml. For the mixed culture, average values for the maximum specific reaction rate, V_max, ranged from 2.4 ± 0.2 μmol of sulfate/mg (dry weight) of SRB · h⁻¹) at 0.25 mM sulfate to 5.0 ± 1.1 μmol of sulfate/mg (dry weight) of SRB · h⁻¹ at 10 mM sulfate (average cell concentration, 0.52 mg [dry weight]/ml). For the pure culture, V_max was 1.6 ± 0.2 μmol of sulfate/mg (dry weight) of SRB · h⁻¹ at 1 mM sulfate (0.29 mg [dry weight] of cells/ml). When both electron acceptors were present, sulfate reduction remained zero order for both cultures, while uranium reduction was first order, with rate constants of 0.071 ± 0.003 mg (dry weight) of cells/ml · min⁻¹ for the mixed culture and 0.137 ± 0.016 mg (dry weight) of cells/ml · min⁻¹ (U₀ = 1 mM) for the D. desulfuricans culture. Both cultures exhibited a faster rate of uranium reduction in the presence of sulfate and no lag time until the onset of U reduction in contrast to U alone. This kinetics information can be used to design an SRB-dominated biotreatment scheme for the removal of U(VI) from an aqueous source.     

Nonreductive Biomineralization of Uranium(VI) Phosphate Via Microbial Phosphatase Activity in Anaerobic Conditions

The remediation of uranium from soils and groundwater at Department of Energy (DOE) sites across the United States represents a major environmental issue, and bioremediation has exhibited great potential as a strategy to immobilize U in the subsurface. The bioreduction of U(VI) to insoluble U(IV) uraninite has been proposed to be an effective bioremediation process in anaerobic conditions. However, high concentrations of nitrate and low pH found in some contaminated areas have been shown to limit the efficiency of microbial reduction of uranium. In the present study, nonreductive uranium biomineralization promoted by microbial phosphatase activity was investigated in anaerobic conditions in the presence of high nitrate and low pH as an alternative approach to the bioreduction of U(VI). A facultative anaerobe, Rahnella sp. Y9602, isolated from soils at DOE's Oak Ridge Field Research Center (ORFRC), was able to respire anaerobically on nitrate as a terminal electron acceptor in the presence of glycerol-3-phosphate (G3P) as the sole carbon and phosphorus source and hydrolyzed sufficient phosphate to precipitate 95% total uranium after 120 hours in synthetic groundwater at pH 5.5. Synchrotron X-ray diffraction and X-ray absorption spectroscopy identified the mineral formed as chernikovite, a U(VI) autunite-type mineral. The results of this study suggest that in contaminated subsurfaces, such as at the ORFRC, where high concentrations of nitrate and low pH may limit uranium bioreduction, the biomineralization of U(VI) phosphate minerals may be a more attractive approach for in situ remediation providing that a source of organophosphate is supplied for bioremediation.     

Interactions of three eco-types of Acidithiobacillus ferrooxidans with U(VI)

The interaction of uranium with cells of three recently described eco-types of Acidithiobacillus ferrooxidans recovered from uranium mining wastes was studied. The uranium sorption studies demonstrated that the strains from these types possess different capabilities to accumulate and tolerate uranium. The amount of uranium biosorbed by all A. ferrooxidans strains increased with considerable concentrations. We have found that the representatives of type II accumulate significantly higher amounts of uranium in comparison to the other A. ferrooxidans strains. The investigations of the tolerance to uranium showed that the types I and III are resistant to 8 and 9 mM of uranium respectively, whereas the type II does not tolerate more than 2 mM of uranium. The recovery of the accumulated uranium by desorption was investigated using various desorbing agents as sodium carbonate, sodium citrate and EDTA at different concentrations. Sodium carbonate was the most efficient desorbing agent, removing 97% of the uranium sorbed from the cells of A. ferrooxidans type III, and 88.33 and 88.50% from the cells of the types I and II, respectively.     

Uranium(VI) bioprecipitation mediated by a phosphate solubilizing Acinetobacter sp. YU-SS-SB-29 isolated from a high natural background radiation site

Bioprecipitation of uranium (U) into uranyl phosphate (U-P) mediated by soluble ortho-phosphate is an attractive proposition for U bioremediation. As an alternative to the microbial phosphatase, we have investigated the dissolution of phosphate by the organic acids produced by bacteria to aid in U precipitation. The bacterium Acinetobacter sp. YU-SS-SB-29, isolated from monazite sand of natural background radiation site solubilized 952.0 ± 46.7 mg L⁻¹ phosphate from tri-calcium phosphate (TCP) in the Pikovskaya's medium and showed tolerance to 120 ppm U(VI). U(VI) bioprecipitation was investigated by adding different concentrations of U(VI) to a cell-free culture supernatant containing ortho-phosphate released from TCP by the bacterium. A yellow precipitate was immediately formed following which there was a reduction in U(VI) concentration. A strong positive correlation (R² = 0.98) was observed between % decrease in phosphate and U(VI) concentration (up to 750 ppm U) added. FTIR and EDX spectra of the yellow precipitate demonstrated the involvement of phosphate groups in U(VI) binding. Furthermore, the XRD pattern of the precipitate agrees well with that of chernikovite, a uranyl phosphate mineral. The results from this study demonstrate the potential of the U tolerant, phosphate solubilizing bacterium Acinetobacter sp. YU-SS-SB-29 for non-reductive in situ bioprecipitation of uranium.     

Influence of calcium on microbial reduction of solid phase uranium(VI)

The effect of calcium on the dissolution and microbial reduction of a representative solid phase uranyl [U(VI)], sodium boltwoodite (NaUO(2)SiO(3)OH . 1.5H(2)O), was investigated to evaluate the rate-limiting step of microbial reduction of the solid phase U(VI). Microbial reduction experiments were performed in a culture of a dissimilatory metal-reducing bacterium (DMRB), Shewanella oneidensis strain MR-1, in a bicarbonate medium with lactate as electron donor at pH 6.8 buffered with PIPES. Calcium increased the rate of Na-boltwoodite dissolution and U(VI) bioavailability by increasing its solubility through the formation of a ternary aqueous calcium-uranyl-carbonate species. The ternary species, however, decreased the rates of microbial reduction of aqueous U(VI). Laser-induced fluorescence spectroscopy (LIFS) and transmission electron microscopy (TEM) collectively revealed that microbial reduction of solid phase U(VI) was a sequentially coupled process of Na-boltwoodite dissolution, U(VI) aqueous speciation, and microbial reduction of dissolved U(VI) to U(IV) that accumulated on bacterial surfaces/periplasm. Under studied experimental conditions, the overall rate of microbial reduction of solid phase U(VI) was limited by U(VI) dissolution reactions in solutions without calcium and limited by microbial reduction in solutions with calcium. Generally, the overall rate of microbial reduction of solid phase U(VI) was determined by the coupling of solid phase U(VI) dissolution, U(VI) aqueous speciation, and microbial reduction of dissolved U(VI) that were all affected by calcium.     

c-Type Cytochrome-Dependent Formation of U(IV) Nanoparticles by Shewanella oneidensis

Modern approaches for bioremediation of radionuclide contaminated environments are based on the ability of microorganisms to effectively catalyze changes in the oxidation states of metals that in turn influence their solubility. Although microbial metal reduction has been identified as an effective means for immobilizing highly-soluble uranium(VI) complexes in situ, the biomolecular mechanisms of U(VI) reduction are not well understood. Here, we show that c-type cytochromes of a dissimilatory metal-reducing bacterium, Shewanella oneidensis MR-1, are essential for the reduction of U(VI) and formation of extracelluar UO ₂ nanoparticles. In particular, the outer membrane (OM) decaheme cytochrome MtrC (metal reduction), previously implicated in Mn(IV) and Fe(III) reduction, directly transferred electrons to U(VI). Additionally, deletions of mtrC and/or omcA significantly affected the in vivo U(VI) reduction rate relative to wild-type MR-1. Similar to the wild-type, the mutants accumulated UO ₂ nanoparticles extracellularly to high densities in association with an extracellular polymeric substance (EPS). In wild-type cells, this UO ₂-EPS matrix exhibited glycocalyx-like properties and contained multiple elements of the OM, polysaccharide, and heme-containing proteins. Using a novel combination of methods including synchrotron-based X-ray fluorescence microscopy and high-resolution immune-electron microscopy, we demonstrate a close association of the extracellular UO ₂ nanoparticles with MtrC and OmcA (outer membrane cytochrome). This is the first study to our knowledge to directly localize the OM-associated cytochromes with EPS, which contains biogenic UO ₂ nanoparticles. In the environment, such association of UO ₂ nanoparticles with biopolymers may exert a strong influence on subsequent behavior including susceptibility to oxidation by O ₂ or transport in soils and sediments.