Laboratory contamination over time during low‐biomass sample analysis

Bacteria are not only ubiquitous on earth but can also be incredibly diverse within clean laboratories and reagents. The presence of both living and dead bacteria in laboratory environments and reagents is especially problematic when examining samples with low endogenous content (e.g., skin swabs, tissue biopsies, ice, water, degraded forensic samples or ancient material), where contaminants can outnumber endogenous microorganisms within samples. The contribution of contaminants within high‐throughput studies remains poorly understood because of the relatively low number of contaminant surveys. Here, we examined 144 negative control samples (extraction blank and no‐template amplification controls) collected in both typical molecular laboratories and an ultraclean ancient DNA laboratory over 5 years to characterize long‐term contaminant diversity. We additionally compared the contaminant content within a home‐made silica‐based extraction method, commonly used to analyse low endogenous content samples, with a widely used commercial DNA extraction kit. The contaminant taxonomic profile of the ultraclean ancient DNA laboratory was unique compared to modern molecular biology laboratories, and changed over time according to researcher, month and season. The commercial kit also contained higher microbial diversity and several human‐associated taxa in comparison to the home‐made silica extraction protocol. We recommend a minimum of two strategies to reduce the impacts of laboratory contaminants within low‐biomass metagenomic studies: (a) extraction blank controls should be included and sequenced with every batch of extractions and (b) the contributions of laboratory contamination should be assessed and reported in each high‐throughput metagenomic study.     

Effects of Bitumen Deposit on Soil Physico-Chemical Characteristics

Soils in the bitumen deposit area of Nigeria were analyzed for the physico-chemical characteristics and element contents to determine the level of contamination by the natural resource and to provide a framework for establishing relationships between the chemistry of mineral deposit and its host soils. The physico-chemical parameters were determined using standard analytical methods, while the elemental concentrations were determined by Energy Dispersive X-ray Fluorescence Spectrometry technique. The results revealed that soils had higher concentrations of associated hydrocarbon formation elements than other Nigerian soils but lower than the sand and bitumen fractions of Nigerian bituminous sands, indicating contamination of the bitumen host soils by the mineral deposit. Strong positive correlations existed between some elements in the soils, suggesting common sources or chemical similarities. Positive correlations are shown by the results of the cross plot analysis, which establish relationships between the soils and the bitumen deposit, indicating that contamination of the soils could easily affect other components of the ecosystem, viz water and vegetation.     

Carbon isotopes and lipid biomarkers from organic‐rich facies of the Shuram Formation,Sultanate of Oman

The largest recorded carbon isotopic excursion in Earth history is observed globally in carbonate rocks of middle Ediacaran age. Known from the Sultanate of Oman as the ‘Shuram excursion’, this event records a dramatic, systematic shift in δ¹³C_carbonate values to ca. ?12‰. Attempts to explain the nature, magnitude and origin of this excursion include (i) a primary signal resulting from the protracted oxidation of a large dissolved organic carbon reservoir in seawater, release of methane from sediment‐hosted clathrates, or water column stratification; and (ii) a secondary signal from diagenetic processes. The compositions and isotope ratios of organic carbon phases during the excursion are critical to evaluating these ideas; however, previous work has focused on localities that are low in organic carbon, hindering straightforward interpretation of the observed time‐series trends. We report carbon isotope data from bulk organic carbon, extracted bitumen and kerogen, in addition to lipid biomarker data, from a subsurface well drilled on the eastern flank of the South Oman Salt Basin, Sultanate of Oman. This section captures Nafun Group strata through the Ediacaran–Cambrian boundary in the Ara Group and includes an organic‐rich, deeper‐water facies of the Shuram Formation. Despite the high organic matter contents, the carbon isotopic compositions of carbonates – which record a negative δ¹³C isotope excursion similar in shape and magnitude to sections elsewhere in Oman – do not covary with those of organic phases (bulk TOC, bitumen and kerogen). Paired inorganic and organic δ¹³C data only display coupled behaviour during the latter part of the excursion's recovery. Furthermore, lipid biomarker data reveal that organic matter composition and source inputs varied stratigraphically, reflecting biological community shifts in non‐migrated, syngenetic organic matter deposited during this interval.     

Hydrocarbons obtained by pyrolysis of some precambrian rocks of minnesota

Drill core samples of 42 Precambrian sedimentary, igneous, and metamorphic rocks were analyzed by heating under partial vacuum at 100°C and at 400°C to release hydrocarbons and other volatile products.The core samples yielded methane in amounts ranging from traces to 3 microliters per gram, but averaged much less. By way of comparison, samples of Middle Devonian Marcellus black shale, from Pennsylvania, yielded methane in amounts up to 7ul/g.Other straight chain hydrocarbons up to C₁₁ were found in the volatile products, especially those obtained at 400°C, and benzene was a common product, also mainly in the 400°C experiments. Carbon dioxide and nitrogen appear to form a large part of the nonhydrocarbon volatiles in at least some of the samples.Spectral data indicate that the straight chain pyrolysis products of the Precambrian rocks are mainly alkenes, whereas those of the Devonian rocks, referred to above, are a mixture of alkanes and alkenes. Alkanes were however, obtained from several algae-bearing Middle Precambrian argillites. Available evidence indicates, although not conclusively, that the alkenes were contained in the rock rather than being produced from alkanes during pyrolysis.The writers believe that surface contamination in most of the drill cores was minimal owing to the low permeability of the rocks studied, and that contamination by drilling was also minimal.There is a reasonable possibility that the volatiles, if not formed from kerogen residues by the pyrolysis experiments, are in part juvenile igneous gases or are substances that were distilled out of the deeperlying rocks during intervals of folding and metamorphism, and subsequently accumulated at higher levels.     

Effects of Light Crude Oil Contamination on the Physical and Mechanical Properties of Fine Sand

The use of oil-contaminated sand in building and construction is now being considered as an alternative and cost-effective way to minimize its adverse effect on the environment. To achieve this, the effect of oil contamination on the important mechanical properties of sand should be investigated first. This study investigated the effect of petroleum-derived contaminants on the water absorption, permeability, cohesion, friction angle, and shear strength of fine sand. Contaminated samples were prepared by mixing fine sand with different percentages of light crude oil (0 to 20%). The results indicated that the water absorption of fine sand decreases with an increase in crude oil. An increase in the cohesion was observed for sand with up to 1% of oil contamination, after which the cohesion began to decrease, which also results in the reduction in the permeability. A slight reduction in the friction angle was found for oil-contaminated fine sand. At a low normal stress of 50 kPa, as the percentage of light crude oil increased, the shear strength increased up to 1% of oil contamination and then it decreased. These results provided useful information on how oil-contaminated sand can be used safely and effectively in building and construction.     

Modern Subsurface Bacteria in Pristine 2.7 Ga-Old Fossil Stromatolite Drillcore Samples from the Fortescue Group,Western Australia

Background

Several abiotic processes leading to the formation of life-like signatures or later contamination with actual biogenic traces can blur the interpretation of the earliest fossil record. In recent years, a large body of evidence showing the occurrence of diverse and active microbial communities in the terrestrial subsurface has accumulated. Considering the time elapsed since Archaean sedimentation, the contribution of subsurface microbial communities postdating the rock formation to the fossil biomarker pool and other biogenic remains in Archaean rocks may be far from negligible.

Methodology/Principal Findings

In order to evaluate the degree of potential contamination of Archean rocks by modern microorganisms, we looked for the presence of living indigenous bacteria in fresh diamond drillcores through 2,724 Myr-old stromatolites (Tumbiana Formation, Fortescue Group, Western Australia) using molecular methods based on the amplification of small subunit ribosomal RNA genes (SSU rDNAs). We analyzed drillcore samples from 4.3 m and 66.2 m depth, showing signs of meteoritic alteration, and also from deeper “fresh” samples showing no apparent evidence for late stage alteration (68 m, 78.8 m, and 99.3 m). We also analyzed control samples from drilling and sawing fluids and a series of laboratory controls to establish a list of potential contaminants introduced during sample manipulation and PCR experiments. We identified in this way the presence of indigenous bacteria belonging to Firmicutes, Actinobacteria, and Alpha-, Beta-, and Gammaproteobacteria in aseptically-sawed inner parts of drillcores down to at least 78.8 m depth.

Conclusions/Significance

The presence of modern bacterial communities in subsurface fossil stromatolite layers opens the possibility that a continuous microbial colonization had existed in the past and contributed to the accumulation of biogenic traces over geological timescales. This finding casts shadow on bulk analyses of early life remains and makes claims for morphological, chemical, isotopic, and biomarker traces syngenetic with the rock unreliable in the absence of detailed contextual analyses at microscale.     

Identification of Metals Contamination in Firing-Range Soil Using Geochemical Correlation Evaluation

Lead, antimony, copper, and zinc are expected contaminants in firing-range soil due to their presence in bullets, shells, etc. These elements are also naturally occurring, so it is important to distinguish between naturally high background concentrations and actual contamination during site investigations. A data visualization technique based on geochemical principles has been successfully applied during range investigations to identify contaminated samples and confirm the success of remediation efforts. For example, at some locations, lead has a natural affinity to adsorb on manganese oxides, yielding positive correlations between lead and manganese concentrations and consistent Pb/Mn ratios in uncontaminated samples. Contaminated samples are identified by anomalously high Pb/Mn ratios. Plots of copper or zinc versus lead provide supporting evidence for a contaminant source; Cu/Pb or Zn/Pb ratios in oxic soils are distinctly different in uncontaminated samples versus samples co-contaminated with these metals. Two case studies are presented from facilities in the United States.     

Rhizosphere microflora of plants used for the phytoremediation of bitumen-contaminated soil

The microbial communities and their degradative potential in rhizospheres of alfalfa (Medicago sativa) and reed (Phragmites australis) and in unplanted soil in response to bitumen contamination of soil were studied in pot experiments. According to the results of fluorescence microscopy, over a period of 27 months, bitumen contamination of soil reduced the total number of microorganisms more significantly (by 75%) in unplanted than in rhizosphere soil (by 42% and 7% for reed and alfalfa, respectively) and had various effects on some important physiological groups of microorganisms such as actinomycetes as well as nitrogen-fixing, nitrifying, denitrifying, ammonifying, phosphate-solubilizing, sulphur-oxidizing, cellulolytic and hydrocarbon-degrading microorganisms. The changes in the physiological structure of the microbial community under bitumen contamination were found to hinge on not merely the presence of plants but also their type. It was noted that the rhizosphere microflora of alfalfa was less inhibited by hydrocarbon pollution and had a higher degradative potential than the rhizosphere microflora of reed.     

A decision framework for selecting remediation technologies at hydrocarbon‐contaminated sites

A variety of remediation technologies are available to address hydrocarbon contamination, including free product recovery, soil venting, air sparging, groundwater recovery and treatment, and in situ bioremediation. These technologies address hydrocarbon contamination distributed between free, adsorbed, and dissolved phases in both the vadose and saturated zones. Selection of appropriate technologies is dependent on a number of factors, including contaminants, site‐specific characteristics, clean‐up goals, technology feasibility, cost, and regulatory and time requirements. This article describes a decision framework for selecting appropriate remediation technologies at hydrocarbon‐contaminated sites in a structured and tiered manner. Decision modules include (1) site characterization and product recovery; (2) vadosezone treatment: soil venting, bioremediation, and excavation; (3) saturated zone treatment: sparging, bioremediation, groundwater recovery, and excavation; and (4) groundwater treatment: carbon, air stripping, advanced oxidation, and bioreactors. Selection criteria for treatment technologies that address vadose‐ and saturated‐zone soils, as well as recovered groundwater, are described. The decision framework provides a systematic process to formulate solutions to complex problems and documents the rationale for selecting remediation systems designed to achieve closure at hydrocarbon‐contaminated sites.     

Microbe-aliphatic hydrocarbon interactions in soil: implications for biodegradation and bioremediation

Aliphatic hydrocarbons make up a substantial portion of organic contamination in the terrestrial environment. However, most studies have focussed on the fate and behaviour of aromatic contaminants in soil. Despite structural differences between aromatic and aliphatic hydrocarbons, both classes of contaminants are subject to physicochemical processes, which can affect the degree of loss, sequestration and interaction with soil microflora. Given the nature of hydrocarbon contamination of soils and the importance of bioremediation strategies, understanding the fate and behaviour of aliphatic hydrocarbons is imperative, particularly microbe-contaminant interactions. Biodegradation by microbes is the key removal process of hydrocarbons in soils, which is controlled by hydrocarbon physicochemistry, environmental conditions, bioavailability and the presence of catabolically active microbes. Therefore, the aims of this review are (i) to consider the physicochemical properties of aliphatic hydrocarbons and highlight mechanisms controlling their fate and behaviour in soil; (ii) to discuss the bioavailability and bioaccessibility of aliphatic hydrocarbons in soil, with particular attention being paid to biodegradation, and (iii) to briefly consider bioremediation techniques that may be applied to remove aliphatic hydrocarbons from soil.     

Matrix solid‐phase dispersion with sand in chromatographic analysis of essential oils in herbs

Introduction – Matrix solid‐phase dispersion (MSPD) is a very simple, cheap and relatively quick sample preparation procedure which involves simultaneous disruption and extraction of various solid and semi‐solid samples due to the direct mechanical blending of the sample with a SPE sorbent, mainly C₁₈. Little is known about MSPD application as a sample preparation method for the analysis of essential oil components in herbs. Objective – To evaluate if C₁₈ sorbent, commonly used in MSPD process, can be substituted with sand in the procedure of essential oil analysis. Methodology – Essential oil extracts were obtained from mint, sage, chamomile, marjoram, savory and oregano using MSPD with C₁₈ sorbent or sand, pressurised liquid extraction and steam distillation. Their qualitative and quantitative compositions ware established by GC‐MS and GC‐FID. Results – The results prove that C₁₈ sorbent can be substituted with sand in the procedure of essential oil analysis in herbs. The recoveries of essential oil components estimated using MSPD/sand are almost equal to those using pressurised liquid extraction. Conclusion – The results presented in the paper reveal that MSPD with sand is suitable for the isolation of essential oil components from herbs. Its extraction efficiency is equivalent to pressurised liquid extraction, recognised as one of the most efficient extraction methods. The cost of MSPD procedure for essential oil analysis can be significantly diminished by substituting C₁₈ with sand. Copyright © 2010 John Wiley & Sons, Ltd.     

How hot is that spot?

Every year across America, tens of thousands of soil samples are collected and analyzed for the presence of toxic contaminants. From among these sampling results, “hot spots”; of soil contamination are identified. One or more hot spots on a property precipitates follow‐up activities, typically at great expense. Given that costly action is undertaken as a result of this identification, it is surprising that there is no objective approach to identifying what is or is not a hot spot of soil contamination. A new approach considers how soil contamination can lead to potentially health‐threatening exposures. Based on this approach, an objective set of characteristics for a hot spot of soil contamination has been developed.     

Rehabilitating Seagrass by Facilitating Recruitment: Improving Chances for Success

Attempts to arrest seagrass loss through numerous rehabilitation methods have traditionally produced inconsistent results. On Australia's southern coast, hessian bags made from biodegradable jute fibers show promise for rehabilitating Amphibolis antarctica by facilitating recruitment of seedlings in situ. Testing ways to improve the performance of bags (i.e. increasing seagrass recruitment and establishment) showed that bags with a coarse outer weave of hessian facilitated greater seedling densities (approximately 1700 individuals/m²) than bags with a fine outer weave, but the content of bags (sand vs. sand and rubble mixture) had little effect. Isolated bags facilitated greater longer term densities than bags grouped together, while similar densities were sampled up to 80 m away from a natural meadow. Lastly, bags that had spent less time in situ initially facilitated more recruits than older bags, but longer term (21–32 months) retention was similar among bag ages. Collectively, the results suggest hessian bags can be a relatively simple, cost‐effective, and environmentally friendly method for rehabilitating Amphibolis seagrass, with few considerations in their use other than their physical architecture and arrangement (e.g. isolated coarse‐weave bags).     

Free and kerogen‐bound biomarkers from late Tonian sedimentary rocks record abundant eukaryotes in mid‐Neoproterozoic marine communities

Lipid biomarker assemblages preserved within the bitumen and kerogen phases of sedimentary rocks from the ca. 780–729 Ma Chuar and Visingsö Groups facilitate paleoenvironmental reconstructions and reveal fundamental aspects of emerging mid‐Neoproterozoic marine communities. The Chuar and Visingsö Groups were deposited offshore of two distinct paleocontinents (Laurentia and Baltica, respectively) during the Tonian Period, and the rock samples used had not undergone excessive metamorphism. The major polycyclic alkane biomarkers detected in the rock bitumens and kerogen hydropyrolysates consist of tricyclic terpanes, hopanes, methylhopanes, and steranes. Major features of the biomarker assemblages include detectable and significant contribution from eukaryotes, encompassing the first robust occurrences of kerogen‐bound regular steranes from Tonian rocks, including 21‐norcholestane, 27‐norcholestane, cholestane, ergostane, and cryostane, along with a novel unidentified C₃₀ sterane series from our least thermally mature Chuar Group samples. Appreciable values for the sterane/hopane (S/H) ratio are found for both the free and kerogen‐bound biomarker pools for both the Chuar Group rocks (S/H between 0.09 and 1.26) and the Visingsö Group samples (S/H between 0.03 and 0.37). The more organic‐rich rock samples generally yield higher S/H ratios than for organic‐lean substrates, which suggests a marine nutrient control on eukaryotic abundance relative to bacteria. A C₂₇ sterane (cholestane) predominance among total C₂₆–C₃₀ steranes is a common feature found for all samples investigated, with lower amounts of C₂₈ steranes (ergostane and crysotane) also present. No traces of known ancient C₃₀ sterane compounds; including 24‐isopropylcholestanes, 24‐n‐propylcholestanes, or 26‐methylstigmastanes, are detectable in any of these pre‐Sturtian rocks. These biomarker characteristics support the view that the Tonian Period was a key interval in the history of life on our planet since it marked the transition from a bacterially dominated marine biosphere to an ocean system which became progressively enriched with eukaryotes. The eukaryotic source organisms likely encompassed photosynthetic primary producers, marking a rise in red algae, and consumers in a revamped trophic structure predating the Sturtian glaciation.     

Microbiological Evaluation of Suture Items Before Radiation Sterilization

Microbiological contamination levels of suture samples taken at various stages of the manufacturing process in a new hygienically controlled plant were determined by employing a membrane filturation technique. Both raw material and materials handled manually in the production process were tested to assess the effect of manual handling on the product contamination level. Evaluation of the efficacy of contamination control, however, was directed primarily to the finished, packaged products, just prior to the processing with cobalt 60. The suture material for testing was divided into two groups, namely, wet and dry products, the wet being packaged in a special "tubing" fluid consisting mainly of isopropyl alcohol. Initial contamination results are reported as the average of values obtained on the test day and the preceding 9 consecutive production days. A total of 1,787 suture samples tested in the dry group showed daily averages varying between 2.1 and 14.8 contaminants per suture. The 2,980 wet-packaged suture samples tested gave daily averages varying from 0.7 to 4.2 contaminants per suture. The highest values obtained for an individual suture were 400 for the dry and 89 for the wet. Identification studies of the contaminants revealed that fungi predominated. Most of the bacterial contaminants proved to be spore-forming rods.     

Urinary Tract Infections in the Newborn: Diagnosis from Mid-stream Urine Specimens

Mid-stream urines can be obtained for culture in the majority of neonates with a minimum of effort. Urines collected in plastic bags for cultures showed more than 10,000 organisms per ml. in over 50% of the specimens so obtained from healthy neonates. The use of bags or similar collecting devices should be discouraged. The use of skin disinfectants before obtaining the urine did not decrease the number of contaminants. A good mid-stream urine is more important in avoiding contamination than is the cleansing of the external genitals. Suprapubic aspiration or catheterization should be reserved for those infants in whom (a) repeat mid-stream urine cultures yield equivocal results and (b) the clinical situation does not allow time for repetition of a mid-stream urine culture.     

In situ remediation of aquifers contaminated with dense nonaqueous phase liquids by chemically enhanced solubilization

Chemically enhanced solubilization (CES) is an advanced variant of pump‐andtreat that results in more effective and more rapid remediation of groundwater contaminated with organic solvents and other dense nonaqueous‐phase liquids (DNAPLs). Attempts to remediate DNAPL‐contaminated groundwater by pump‐and‐treat have generally not been successful, due to the low aqueous solubility of most DNAPLs. Regions of undissolved, organic liquids slowly release additional contamination to surrounding groundwater, in effect acting as in situ sources of contamination and hindering the progress of remediation attempts. Cleaning up an aquifer can take many decades or more of pump‐and‐treat. CES accelerates pump‐and‐treat by using surfactants at low concentration to increase the solubility of organic contaminants by up to three orders of magnitude, while maintaining hydraulic control. The surfactants are chosen to maximize contaminant solubilization while minimizing decreases in the DNAPL/ water interfacial tension in order to prevent mobilization of DNAPL to uncontaminated regions. The surfactants are also selected to be nontoxic and biodegradable (many are U.S. Food and Drug Administration‐ (FDA‐) approved food additives). After the contaminants have been solubilized, they are pumped to the surface and treated by air stripping and other methods as in traditional pump‐and‐treat operations. CES has had extensive laboratory development and is now being field tested at three sites. The first field test is at Canadian Forces Base Borden, a military facility in Ontario, Canada. The field test involves the controlled contamination of a shallow sand aquifer with approximately 240 L of tetrachloroethylene (PCE). CES increased the contaminant concentration in the extracted water to over 10,000 ppm of PCE, compared with an aqueous solubility of 200 ppm. At latest report, more than 80% of the residual PCE has been removed. A second field test is currently in preparation at a chlorinated solvent manufacturing facility in Texas and a third at a DOE site with PCE, 1,1,1‐trichloroethane (TCA), and trichloroethylene (TCE) contamination.     

Hydrocarbons preserved in a ~2.7 Ga outcrop sample from the Fortescue Group,Pilbara Craton,Western Australia

The hydrocarbons preserved in an Archean rock were extracted, and their composition and distribution in consecutive slices from the outside to the inside of the rock were examined. The 2.7 Ga rock was collected from the Fortescue Group in the Pilbara region, Western Australia. The bitumen I (solvent‐extracted rock) and bitumen II (solvent‐extracted hydrochloric acid‐treated rock) fractions have different hydrocarbon compositions. Bitumen I contains only trace amounts of aliphatic hydrocarbons and virtually no aromatic hydrocarbons. In contrast, bitumen II contains abundant aliphatic and aromatic hydrocarbons. The difference seems to reflect the weathering history and preservational environment of the investigated rock. Aliphatic hydrocarbons in bitumen I are considered to be mainly from later hydrocarbon inputs, after initial deposition and burial, and are therefore not indigenous. The lack of aromatic hydrocarbons in bitumen I suggests a severe weathering environment since uplift and exposure of the rock at the Earth's surface in the Cenozoic. On the other hand, the high abundance of aromatic hydrocarbons in bitumen II suggests that bitumen II hydrocarbons have been physically isolated from removal by their encapsulation within carbonate minerals. The richness of aromatic hydrocarbons and the relative scarcity of aliphatic hydrocarbons may reflect the original compositions of organic materials biosynthesised in ancient organisms in the Archean era, or the high thermal maturity of the rock. Cyanobacterial biomarkers were observed in the surficial slices of the rock, which may indicate that endolithic cyanobacteria inhabited the surface outcrop. The distribution of aliphatic and aromatic hydrocarbons implies a high thermal maturity, which is consistent with the lack of any specific biomarkers, such as hopanes and steranes, and the prehnite–pumpellyite facies metamorphic grade.     

Microbial assemblage and palaeoenvironmental reconstruction of the 1.38 Ga Velkerri Formation,McArthur Basin,northern Australia

The ca. 1.38 billion years (Ga) old Roper Group of the McArthur Basin, northern Australia, is one of the most extensive Proterozoic hydrocarbon‐bearing units. Organic‐rich black siltstones from the Velkerri Formation were deposited in a deep‐water sequence and were analysed to determine their organic geochemical (biomarker) signatures, which were used to interpret the microbial diversity and palaeoenvironment of the Roper Seaway. The indigenous hydrocarbon biomarker assemblages describe a water column dominated by bacteria with large‐scale heterotrophic reworking of the organic matter in the water column or bottom sediment. Possible evidence for microbial reworking includes a large unresolved complex mixture (UCM), high ratios of mid‐chained and terminally branched monomethyl alkanes relative to n‐alkanes—features characteristic of indigenous Proterozoic bitumen. Steranes, biomarkers for single‐celled and multicellular eukaryotes, were below detection limits in all extracts analysed, despite eukaryotic microfossils having been previously identified in the Roper Group, albeit largely in organically lean shallower water facies. These data suggest that eukaryotes, while present in the Roper Seaway, were ecologically restricted and contributed little to export production. The 2,3,4‐ and 2,3,6‐trimethyl aryl isoprenoids (TMAI) were absent or in very low concentration in the Velkerri Formation. The low abundance is primary and not caused by thermal destruction. The combination of increased dibenzothiophene in the Amungee Member of the Velkerri Formation and trace metal redox geochemistry suggests that degradation of carotenoids occurred during intermittent oxygen exposure at the sediment–water interface and/or the water column was rarely euxinic in the photic zone and likely only transiently euxinic at depth. A comparison of this work with recently published biomarker and trace elemental studies from other mid‐Proterozoic basins demonstrates that microbial environments, water column geochemistry and basin redox were heterogeneous.     

Procedures involving lipid media for detection of bacterial contamination in breweries.

The liquid equivalent of universal beer agar, designated universal beer liquid medium, and its beer-free equivalent, universal liquid medium (UL), were equally effective in demonstrating bacterial contamination in 120 of 200 samples from different stages of commercial brewing process. Growth of the contaminants after 3 days was consistently more luxuriant in the UL medium. A yeast-water substrate medium failed to reveal many contaminants detected with UL in 392 samples from three breweries and revealed only a few not detected with UL. The use of UL and a lactose-peptone medium, with microscope examination of the media for bacterial growth, permitted detection of 93% of the known contaminants compared to 87%, detected with UL alone; this combination or universal beer liquid medium plus lactose-peptone medium can therefore be recommended for the detection of bacterial contaminants in brewery samples. Bacterial contamination of pitching yeasts appeared to be a particular problem in the breweries investigated.