A rapid and simple estimation of cell cycle parameters by continuous labeling with bromodeoxyuridine

The DNA synthesis time (Ts) and other related cell cycle parameters were roughly estimated in HeLa cells labeled with bromodeoxyuridine (BrdUrd) for various durations by using the flow cytometrical technique. The labeling indices increased in proportion to time after addition of BrdUrd. The Ts can be calculated from the slope of the regression line obtained by plotting the serial labeling indices against the labeling time and was equivalent to the value determined by fraction labeled cells in mid S-phase (FLSm) method. These parameters would be determined by only two samples labeled for different times. This simple method using BrdUrd provides rough but rapid estimation of Ts and other cell cycle parameters without complicated mathematical procedures, in addition to cell cycle partition of cell populations.     

A character separation index suitable for binary data containing equivocal responses

Character separation indices are useful for determining whichbinary characters best discriminate between two populations.To date these indices are unable to cope sufficiently with binarydata that contain equivocal responses. A character separationindex is described which can be applied to data containing equivocalresponses. Furthermore, for larger numbers of group membersthis index can be used to derive the significance that a givencharacter would have given a particular separation value bychance. The BASIC implementation of a program to calculate characterseparation indices is presented. Received on September 30, 1989; accepted on October 3, 1989     

Genealogical Structure among Alleles Regulating Self-Incompatibility in Natural Populations of Flowering Plants

A method is proposed for characterizing the structure of genealogies among alleles that regulate selfincompatibility in flowering plants. Expected distributions of ratios of divergence times among alleles, scaled by functions of allele number, were generated by numerical simulation. These distributions appeared relatively insensitive to the particular parameter values assigned in the simulations over a fourfold range in effective population size and a 100-fold range in mutation rate. Generalized leastsquares estimates of the scaled indices were obtained from genealogies reconstructed from nucleotide sequences of self-incompatibility alleles from natural populations of two solanaceous species. Comparison of the observed indices to the expected distributions generated by numerical simulation indicated that the allelic genealogy of one species appeared consistent with the symmetric balancing selection generated by self-incompatibility. However, the allelic genealogy of the second species showed unusually long terminal branches, suggesting the operation of additional evolutionary processes.     

Calculation of Fluctuating Asymmetry of the biggest Caspian whipsnake population in Hungary compared to a common snake species

The Fluctuating Asymmetry (FA) is a special type of asymmetry in the populations of bilaterally symmetrical creatures. The FA gives us numerical data on the developmental instability of the populations and refers to potential genetical and environmental stressors affecting the populations. Here we give the first data on the FA of the protected Caspian whipsnake (Hierophis caspius) from Hungary. The FA indices of the biggest population from Villány Mts were compared to the FA indices of two differently stressed Dice snake (Natrix tessellata) populations [stressed (Mád) and seminatural (Lake Balaton)]. Based on the values of the multiple and the simple indices derived from sublabial scales, we can say that the status quo of the highly protected Caspian whipsnake population does not represent significant deviation from the near-natural dice snake population from the Lake Balaton.     

The genetic divergence of three populations

This paper considers the effect of the genetic divergence on the genetic composition of three samples drawn from three populations at some time after the populations had split. It generalizes the two-sample case studied earlier by Watterson (1985a). Under the assumptions that (i) mating is at random, (ii) the genes at a locus can be any of infinitely many alleles and all mutants are assumed to be new alleles, and (iii) no selective differences exist, we find the probability distribution of the sample gene configurations. From this distribution the single-sample allelic distribution after one-step and two-step bottlenecks and the allelic distribution in the two-sample case can be obtained as marginal distributions. Some numerical results on the number of alleles in common in the three samples are compared with those obtained by Watterson's simulation method; the agreement is excellent. Also, the probability that the three samples are monomorphic for the same allele is found, and numerical examples are given.     

A general approach of using hair-tubes to monitor the European red squirrel: A method applicable at regional and national scales

Monitoring constitutes a key element in the management and conservation of many mammal species. We describe a technique to obtain population indices for red squirrels (Sciurus vulgaris) using hair-tubes and compare these indices to population estimates obtained by live trapping. Data were collected in seven study areas in the Western and Central Alps in Italy and compared with data previously collected in 11 sites in northern England. The aim was to test if hair-tube census could be used to derive a general predictive model allowing accurate predictions of squirrel numbers in different years, habitats and geographic regions. We used model equations developed from the proportion of hair-tubes visited to predict densities obtained from live-trapping. Hair-tube data gathered in the Central Alps correctly predicted squirrel densities in the Western Alps. A combined data set pooling the sites of these two regions based on the first three years successfully predicted the two successive years. In addition, a combined model derived from areas monitored for five years had a high predictive value locally (89%) and internationally (73%) when applied to the English data set. We therefore believe that the predictive model developed in this study could be of general value and be used to monitor squirrel populations in European low density conifer habitats (0.1–0.5 squirrels/ha). The approach may also be suitable for many tree squirrel populations in North America and other arboreal rodents that occur at similar densities.     

矮慈菇居群的数量分类研究

本文运用聚类分析和主成分分析基础上构造最小生成树的方法,对采自中国南方的7个矮慈菇居群用28个形态学性状进行了数量分类研究。结果划分出3个类群,综合反映了各居群间的亲缘关系。本文还简要讨论了数量分类学方法在居群生物学中的应用问题。     

啮齿动物活动模式的几种数值指标

提出评估啮齿动物活动模式的4 种定量指标: θ、λ、Φ和η。θ主要衡量动物日活动强度的差异程度; λ用于判断动物活动究竟是以昼行性为主还是以夜行性为主; Φ用来甄别动物的活动究竟接近于(或者属于) 单峰型还是接近于(或属于) 双峰型; 而η则是度量动物绝对活动强度的指标。这4 种数值指标分别从不同角度阐明动物活动模式的特征, 可为分析比较动物的活动模式提供参考依据。     

Similarity indices,sample size and diversity

Summary The effect of sample size and species diversity on a variety of similarity indices is explored. Real values of a similarity index must be evaluated relative to the expected maximum value of that index, which is the value obtained for samples randomly drawn from the same universe, with the diversity and sample sizes of the real samples. It is shown that these expected maxima differ from the theoretical maxima, the values obtained for two identical samples, and that the relationship between expected and theoretical maxima depends on sample size and on species diversity in all cases, without exception. In all cases but one (the Morisita index) the expected maxima depend strongly to fairly strongly on sample size and diversity. For some of the more useful indices empirical equations are given to calculate the expected maximum value of the indices to which the observed values can be related at any combination of sample sizes. It is recommended that the Morisita index be used whenever possible to avoid the complex dealings with effects of sample size and diversity; however, when previous logarithmic transformation of the data is required, which often may be the case, the Morisita-Horn or the Renkonen indices are recommended.     

Lomofungin as an inhibitor of nucleic acid synthesis in Saccharomyces cerevisiae

1. The antibiotic lomofungin was found to be a potent inhibitor of both DNA and RNA synthesis in Saccharomyces cerevisiae. Under selected growth conditions inhibition of DNA synthesis by the drug preceded inhibition of RNA synthesis. 2. Although in general lomofungin inhibited synthesis of ribosomal RNA and polydisperse RNA more effectively than that of low-molecular-weight RNA, under certain conditions the drug inhibited almost completely synthesis of both 4S and 5S RNA. 3. Inhibition of both RNA and DNA synthesis may be explained if RNA synthesis is required for DNA synthesis in yeast. Alternatively, lomofungin, in addition to interacting with DNA-dependent RNA polymerase, might interfere with a component(s) of the DNA-synthetic apparatus. The drug may thus prove to be of considerable value in studies of DNA synthesis in eukaryotes.     

Ultrastructural analysis of the retinoid-induced reversal of epithelial hyperplasia and metaplasia

The 7, 12-dimethylbenzanthracene-induced skin papilloma of the mouse and the 3-methylcholanthrene-induced hyperplasia and metaplasia in prostate organ cultures were studied by electron microscopy. The two types of tissue both showed a reversal of hyperplasia and metaplasia when treated with retinoids (= vitamin A and analogs). This reversal was reached by means that are quite characteristic for a given type of tissue. In the skin, DNA-synthetic activity was not influenced by retinoid treatment. There was however, considerable necrosis and an impressive mucous metaplasia. The latter might be at least partly responsible for the cell loss, probably through a loss of anchorage in the prickle-cell layer. In the prostate, no mucous metaplasia was observed, but there was an important depression of DNA-synthetic activity. The secretory apparatus reappeared together with the microvilli, possibly induced by the slowing down of cell division.     

Bayesian analysis of genetic differentiation between populations

We introduce a Bayesian method for estimating hidden population substructure using multilocus molecular markers and geographical information provided by the sampling design. The joint posterior distribution of the substructure and allele frequencies of the respective populations is available in an analytical form when the number of populations is small, whereas an approximation based on a Markov chain Monte Carlo simulation approach can be obtained for a moderate or large number of populations. Using the joint posterior distribution, posteriors can also be derived for any evolutionary population parameters, such as the traditional fixation indices. A major advantage compared to most earlier methods is that the number of populations is treated here as an unknown parameter. What is traditionally considered as two genetically distinct populations, either recently founded or connected by considerable gene flow, is here considered as one panmictic population with a certain probability based on marker data and prior information. Analyses of previously published data on the Moroccan argan tree (Argania spinosa) and of simulated data sets suggest that our method is capable of estimating a population substructure, while not artificially enforcing a substructure when it does not exist. The software (BAPS) used for the computations is freely available from http://www.rni.helsinki.fi/~mjs.     

The evolutionary history of Drosophila buzzatii. XXX. Mitochondrial DNA polymorphism in original and colonizing populations

Both original and colonizer populations of Drosophila buzzatii have been analyzed for mtDNA restriction polymorphisms. Most of the mtDNA nucleotide variation in original populations of NW Argentina can be explained by intrapopulation diversity and only a small fraction can be accounted for by between-population diversity. Similar results are obtained using either the estimated number of nucleotide substitutions per site or considering each restriction site as a locus. Colonizer populations of the Iberian Peninsula are monomorphic and show only the most common haplotype from the original populations. Under the infinite island model and assuming that populations are in equilibrium, fixation indices indicate enough gene flow to explain why the populations are not structured. Yet, the possibility exists that populations have not reached an equilibrium after a founder event at the end of the last Pleistocene glaciation. Tajima's test suggests that directional selection and/or a recent bottleneck could explain the present mtDNA differentiation. Considering the significant population structure found for the chromosomal and some allozyme polymorphisms, the among- population uniformity for mtDNA variability argues in favor of the chromosomal and some allozyme polymorphisms being adaptive.      

Deterministic chaos in the dynamics of biomembrane ion channel current

Within the framework of the theory of deterministic chaos, a nonlinear first-order differential equation with delay and relaxation with periodic influence on channel current for the parameter of order (deviation of channel current from the equilibrium value) was obtained. The numerical solutions of the equation indicate a chaotic dynamics of the order parameter and conformation potential of the channel protein with positive Lyapunov indices. By integration in the time interval between the "jumps" of ions through energy barriers of the channel protein, a mapping was obtained that also results in chaotic solutions realized in experiments. Basic kinetic characteristics of ionic channels for the mapping were obtained: the probability for the channel to be in the open state, P0, and the mean duration of a pack of current pulses depending on controlling parameters. Algorithms for constructing bifurcation diagrams with the transition to chaos and for determining Lyapunov indices and Kholmogorov entropy, pulsation spectra, and other parameters of chaotic dymanics were developed.     

Use of ecological methods in ethnobotany: Diversity indices

The application of ecological concepts to ethnobotanical studies, in particular of diversity, is analyzed. Diversity indices are important tools that may help in understanding human-environment interactions. Those indices allow comparisons on the use of plants by different populations in different environments. A review on recent major ethnobotanical journals was carried out, and 10 studies (7 from Latin America, 2 from Asia and 1 from Europe) were selected based on available data to calculate diversity indices. The Shannon-Wiener indices and rarefaction curves were obtained. High diversity on plant uses were found for studies carried out at Peru, Mexico, Brazil and Thailand. A low diversity was found for Tonga, and island biogeography theory is used to discuss these results. Sampling effort is evaluated through rarefaction curves. The estimation of the diversity of resources used by native populations may be useful when planning conservation areas and their management.     

Age and the course of nephrotoxic nephritis in rats]

In experiments on two groups of mongrel rats (4 weeks old and 4 months old) with induced nephrotoxic nephritis it was revealed that in comparison with adult rats the course of nephritis in ratlings was characterized by lesser proteinuria, selective in nature, by lesser reducticn of endogenous creatinine clearance and diuresis. The acido- and ammo-niogenesis decreased in ratlings and adult rats to the same extent. Morphological changes in the kidneys of ratlings were less pronounced than in adult animals, and were mostly localized in the convoluted tubules. The level of DNA-synthetic activity of the epithelial nuclei of the glomeruli prevailed over this index of the convoluted tubules epithelium. The weight index of the kidneys increased less in ratlings with nephritis than in adult rats. beta-lipoproteinemia in ratlings increased 8 times. Normalization of the urine and blood indices occurred more rapidly in ratlings than in adult rats.     

Multistage index selection in finite populations

Multistage selection with fixed proportions and selection indices based on covariates of the target variable is studied. Assuming a multivariate normal distribution before the selection, expressions are presented for the expectation and the variance of the target variable in the retained subpopulation. As the numerical evaluation for finite populations requires lengthy computations, some approximations using methods for infinite populations are proposed. Numerical illustrations are given for selections in up to three stages.     

Comparing population trend estimates of migratory birds from breeding censuses and capture data at a spring migration bottleneck

Europe has a well‐established network of breeding bird monitoring that is used to produce supranational indices of population trends for many species. However, a comparison of breeding bird censuses with other methods may be beneficial to confirm the validity of such indices. The aim of this study was to assess the value of standardized capture data of migratory birds at migration bottlenecks as an indicator of the effective breeding populations. One limitation to this method is that several populations are co‐occurring at these bottlenecks and their catchment areas need to be clearly identified to allow extrapolation of population indices. Here, we used standardized trends in capture numbers of 30 species on the island of Ponza, a migration bottleneck in the central Mediterranean, and compared them to population trends estimated in the putative catchment breeding areas between 2005 and 2016. The catchment areas were identified through the analysis of ring recoveries during the breeding season of birds passing through Ponza. Our results show an agreement between the population trends observed on Ponza and those in the breeding areas in 15 out of 30 species. The correlations were strongest in species with a more robust definition of the catchment areas, that is, species with more than 10 recoveries, and for which the recoveries were most likely of breeding birds. The main reason for disagreement between the two indices in the remaining species might be related to different intensity of sampling in different areas. This issue can be solved by further developing monitoring projects in underrepresented countries, as well as by intensifying monitoring through ringing, both in the breeding grounds and at migration bottlenecks. These results show that spring migration monitoring at bottlenecks has the potential to provide a valuable complement and an independent control of breeding bird surveys, allowing raising early warnings of population declines and contributing to their conservation.     

Inferential assessment of the MI index of sexual dimorphism: A comparative study with some other sexual dimorphism measures

In order to provide inferential support to the MI measure of sexual dimorphism we proposed for populations distributed as mixture models with two normal components, an interval estimate is constructed. There do not appear to exist measures of sexual dimorphism that possess inferential properties other than some statistics used with this purpose. The use of these sample functions in such a context as well as the purported inferential support of some other sexual dimorphism indices are discussed. A biological case study illustrates the distinct inferential conclusions that can be obtained when the indices here discussed and the one we proposed are considered.     

Visual learning behaviour in Drosophila melanogaster wildtype AS

Visual learning in Drosophila populations is characterized by a fast rate of acquisition, and conditioning indices near 0.3 are obtained. Heterogeneity of the populations with respect to this behaviour is small. Reversed conditioning is possible. Prolonged extinction procedures fail to reduce the conditioning index to zero. Memory lasts for a minimum of 14 hours.