Complex postglacial recolonization inferred from population genetic structure of mottled sculpin Cottus bairdii in tributaries of eastern Lake Michigan,U.S.A.

This study used analyses of the genetic structure of a non‐game fish species, the mottled sculpin Cottus bairdii to hypothesize probable recolonization routes used by cottids and possibly other Laurentian Great Lakes fishes following glacial recession. Based on samples from 16 small streams in five major Lake Michigan, U.S.A., tributary basins, significant interpopulation differentiation was documented (overall F_ST = 0·235). Differentiation was complex, however, with unexpectedly high genetic similarity among basins as well as occasionally strong differentiation within basins, despite relatively close geographic proximity of populations. Genetic dissimilarities were identified between eastern and western populations within river basins, with similarities existing between eastern and western populations across basins. Given such patterns, recolonization is hypothesized to have occurred on three occasions from more than one glacial refugium, with a secondary vicariant event resulting from reduction in the water level of ancestral Lake Michigan. By studying the phylogeography of a small, non‐game fish species, this study provides insight into recolonization dynamics of the region that could be difficult to infer from game species that are often broadly dispersed by humans.     

Evolution of rough sculpin (<Emphasis Type="Italic">Cottus asperrimus</Emphasis>) genetic divergence and late Quaternary displacement on the Hat Creek fault,California, USA

The rough sculpin (Cottus asperrimus) is a threatened species whose geographic range in northwestern California, USA is disrupted by Hat Creek fault. We tested whether the fluvial barriers (rapids and waterfalls) produced by this fault have generated significant phylogeographic structure among rough sculpin populations by analyzing variation in microsatellites and mitochondrial DNA. Rough sculpin isolated on either side of Hat Creek fault exhibited significant genetic divergence (microsatellite F _ST = 0.36; mitochondrial uncorrected p distance = 1 %). Independently derived estimates for the date of divergence, based upon a molecular clock and upon the age of slip on the Hat Creek fault are concordant and indicate divergence was initiated about 0.5–1 million years ago. Based upon the findings of our genetic analysis and the Pleistocene geologic history of midsections of the Pit River, we present a model of evolution of rough sculpin genetic divergence and late Quaternary displacement on Hat Creek fault. Our findings reveal that rough sculpin exhibit significant population structure and that two management units should be recognized within the species for future conservation planning.     

Variation of stone sculpin <Emphasis Type="Italic">Paracottus knerii</Emphasis> (Cottidae,Scorpaeniformes) of Baikal and waters of Baikal region

Sixteen samples of the stone sculpin Paracottus knerii from Baikal Lake, Angara River, and seven water bodies of the Baikal and Angara basins are studied. Variation of the morphometric and meristic characters is considered. It is found that the variation of a number of characters is biotopically conditioned and directed at fish adaptation to deepwater and dwelling in the conditions of rapid current. There are also the characters whose variation does not show any regularity, and it is a consequence of the discontinuity of range of the species. It is shown that the individual pairs of populations have differences in a number of characters, and these differences conform to the subspecies (CD > 1.28) and species levels (presence of hiatus). However all such pairs are connected by “ring overlaps,” thus, it is not possible to consider them as independent taxa.     

Low diversity and high levels of population genetic structuring in introduced eastern mosquitofish (<Emphasis Type="Italic">Gambusia holbrooki</Emphasis>) in the greater Melbourne area,Australia

Eastern mosquitofish (Gambusia holbrooki) were introduced into Australia in 1925 and released to control mosquitoes. Gambusia holbrooki rapidly became invasive in recipient environments and now threaten native fauna. In this study, we used five polymorphic microsatellite loci and sequence from two mitochondrial genes, cytochrome b and cytochrome oxidase I, to evaluate genetic variation, colonisation and movement patterns of introduced G. holbrooki in the greater Melbourne area, and to assist in identifying the feasibility of local eradication. Microsatellite variation was consistently low within populations and there was evidence of bottleneck events for several populations. Populations displayed significant structuring associated with river basins rather than geographic distance, suggesting that habitat connectivity is important for dispersal. However, a few populations within river basins were more closely related to populations in other river basins than within their own basin, most likely reflecting a role of human-assisted dispersal in population establishment. Mitochondrial sequencing revealed only a single haplotype and suggested all populations were founded by individuals from a common source. These genetic data help delineate boundaries for local management strategies.     

Comments on the morphology of Nicsmirnovius eximius (Kiser, 1948) (Aloninae,Anomopoda, Cladocera) in Thailand,with description of its male

The density, diet and habitat use of brown trout (Salmo trutta) and Siberian sculpin (Cottus poecilopus) were studied in the subalpine River Atna in southeastern Norway in the autumn during a six year period (1986–1991). There was an inverse relationship between the density of brown trout and Siberian sculpin. Diet overlap, as indicated by the Schoener index, was high between the two species, ranging between 0.48 and 0.86. Chironomid larvae and other aquatic insects were the most common food items for both species. Brown trout also consumed substantive amounts of surface insects. Siberian sculpin typically occupied sites with finer substrates and greater water depths than brown trout, even though there was considerable overlap in habitat use between the two species. Because the two species shared similar habitats, we suggest that the potential for species interactions exists, particularly at sites where density of sculpin is high.     

Genetic polymorphism of Siberian spruce (Picea obovata Ledeb.) in Middle Siberia

Based on the analysis of 22 loci controlling allozyme variation of MDH, SKDH, 6-PGD, IDH, PEPCA, GOT, FDH, LAP, PGI, PGM, SOD, and GDH, the data on within-and among-population variation for nine cenopopulations of Siberian spruce (Picea obovata Ledeb.) located along the Yenisei mieridian, from 65°50′ NL to 52°14′NL, were obtained. It was demonstrated that 86.36% of the loci, tested in the species analyzed, were polymorphic. The mean number of alleles per locus was 2.91, and the observed and expected heterozygosity constituted 0.161 and 0.168, respectively. More than 97% of total variation occurred within the populations, while the proportion of the among-population variation constituted only 2.3% (F _st =0.0230). Genetic distance (D _N) between the populations examined varied from 0.0019 to 0.0115, averaging at 0.0051. It was shown that in the part of the Siberian spruce range examined there was no close association between the level of the genetic differentiation of the populations and the geographic distance between them. It seems likely, that this finding can be associated with the fact that Siberian spruce, growing on this territory, is the intrazonal species, i.e., it is not attached to a certain forest zone, and its distribution is mostly determined by local ecological conditions.     

High levels of Y-chromosome differentiation among native Siberian populations and the genetic signature of a boreal hunter-gatherer way of life

We examined genetic variation on the nonrecombining portion of the Y chromosome (NRY) to investigate the paternal population structure of indigenous Siberian groups and to reconstruct the historical events leading to the peopling of Siberia. A set of 62 biallelic markers on the NRY were genotyped in 1432 males representing 18 Siberian populations, as well as nine populations from Central and East Asia and one from European Russia. A subset of these markers defines the 18 major NRY haplogroups (A-R) recently described by the Y Chromosome Consortium (YCC 2002). While only four of these 18 major NRY haplogroups accounted for -95% of Siberian Y-chromosome variation, native Siberian populations differed greatly in their haplogroup composition and exhibited the highest phiST value for any region of the world. When we divided our Siberian sample into four geographic regions versus five major linguistic groupings, analyses of molecular variance (AMOVA) indicated higher phiST and phiCT values for linguistic groups than for geographic groups. Mantel tests also supported the existence of NRY genetic patterns that were correlated with language, indicating that language affiliation might be a better predictor of the genetic affinity among Siberians than their present geographic position. The combined results, including those from a nested cladistic analysis, underscored the important role of directed dispersals, range expansions, and long-distance colonizations bound by common ethnic and linguistic affiliation in shaping the genetic landscape of Siberia. The Siberian pattern of reduced haplogroup diversity within populations combined with high levels of differentiation among populations may be a general feature characteristic of indigenous groups that have small effective population sizes and that have been isolated for long periods of time.     

Genetic variability of Siberian fir <Emphasis Type="Italic">Abies sibirica</Emphasis> Ledeb. inferred from AFLP markers

Genetic variability of AFLP markers was studied in 20 populations of Siberian fir (Abies sibirica, Pinaceae) and in two populations of Far-Eastern species Manchurian fir A. nephrolepis and Sakhalin fir A. sachalinensis each. Four pairs of selective primers were used. In total, 168 samples from three fir species were genotyped for 117 polymorphic loci. According to the AMOVA results, the variability proportion characterizing the differences among three Abies species was several times higher (F _CT = 0.53) than that acounting for population differences within the species (F _SC = 0.125). Differentiation of the A. sibirica populations based on AFLP markers exceeded 14% (F _ST = 0.141). Significant correlation between the genetic distances calculated from the AFLP data and the geographic distances between populations was found. The results of AFLP variability analysis supported and supplemented the conclusions inferred previously from allozyme and cpSSR data: several genetically similar geographic groups of Siberian fir were identified. These groups differ both in allele frequencies and in the levels of genetic variation.     

Nuclear RFLP variation in Eucalyptus camaldulensis Dehnh. from northern Australia

Eucalyptus camaldulensis Dehnh. is the most widely planted eucalypt in the tropics. Natural populations are riparian and sampling strategies for breeding programmes have assumed that gene flow among drainage basins is limited. RFLP variation, within and among 31 populations from river systems across northern Australia, was analysed to test this hypothesis. To allow comparisons within and between river systems, trees were sampled from up to three populations per river system. Allele frequencies were correlated with longitude for more than half the 33 RFLP loci surveyed. Genetic identity was greatest between populations in closest geographic proximity, irrespective of river system, suggesting that sampling strategies for breeding programmes should be based on geographic distance rather than river system. The level of genetic variation was similar throughout the geographic range examined (mean H(E) = 0.49). However, there was evidence of a barrier to gene flow between populations in the east and west of the species range. The RFLP data support morphological evidence of hybridisation between E. camaldulensis and E. tereticornis Sm. in several populations in northeast Queensland and the genetic divergence of E. camaldulensis subsp. simulata Brooker and Kleinig.     

Competitive habitat displacement of brown trout by Siberian sculpin: the role of size and density

Habitat competition in brown trout Salmo trutta and Siberian sculpin Cottus poecilopus was investigated by varying density, fish size, and species composition in stream channels providing areas of different substratum particle sizes. In allopatry, both small (52 ± 4 mm L _T) and large (86 ± 6 mm L _T) brown trout exhibited strong preference for the intermediate (8–11 cm diameter) and large (17–21 cm) gravel substrata. There was a tendency for more brown trout to occupy finer (2–4 cm) substrata with increasing density, in particular for large brown trout. Also, more small brown trout were observed on finer substrata when tested with large brown trout, suggesting interspecific competition for restricted space. Both small (56 ± 6 mm L _T) and large (88 ± 10 mm L _T) Siberian sculpin preferred the large gravel in all tests, and did not change their substratum preferences much with increasing densities, suggesting higher tolerance for 'crowding'. The large Siberian sculpin preferred the coarser substratum, and the largest individuals were consistently found on it. In sympatry with large Siberian sculpin, habitat displacement of brown trout occurred, indicative of interspecific competition. A higher proportion of small and large brown trout occupied the finer substrata than in allopatry. Habitat selection by large Siberian sculpin appeared to be unaffected by species composition and density. Small Siberian sculpin were displaced to finer substrata when tested with large Siberian sculpin, suggesting intraspecific competition. The results indicate that Siberian sculpin are potential habitat competitors for young brown trout.     

Analysis of microsatellite variation in the rainbow trout <Emphasis Type="Italic">Parasalmo (Oncorhynchus) mykiss</Emphasis> from Kamchatka

Genetic variation of Kamchatka rainbow trout Parasalmo (O.) mykiss was examined using 10 microsatellite DNA loci, and phylogeographic comparison with other representatives of the species across the distribution range was performed. It was demonstrated that Kamchatka populations differed from other geographic groups of rainbow trout in a number of microsatellite loci. These populations also displayed distinct clustering and were characterized by lower genetic diversity. Analysis of a set of 26 different microsatellite loci (personal and literature data) demonstrated that most of the populations within the Kamchatka region were separated from one another, characterized by marked geographic differentiation, and affiliation to certain river basins. In Kamchatka rainbow trout, with high degree of probability, three geographic clusters (northwestern, southwestern, and eastern) were identified. In general, analysis of microsatellite DNA supported the data on low genetic diversity of the Kamchatka group Parasalmo (O.) mykiss, based on the variation estimates for a number of genes of nuclear and mitochondrial DNA, and allozyme loci.     

Genetic variation and population differentiation in Siberian fir Abies sibirica lebed. Inferred from allozyme markers

Genetic variation in 24 populations of Siberian fir Abies sibirica Lebed. from the Urals, West Siberia, East Siberia, South Siberia, and the Baikal region were examined using allozyme markers. Three out of fifteen allozyme loci proved to be polymorphic. Heterozygosity He was 6.6-9.6%, which is substantially lower than that in other widely spread boreal conifers. Our results suggest that the Siberian fir populations are subdivided into four geographic groups: (1) the Baikal Lake group, (2) the Sayan and the Altai group, (3) the Middle and Southern Urals group, and (4) Subpolar and Northern Urals group. This pattern of geographic differentiation may be explained by the preservation of the Siberian fir during the last glacial maximum (18 000-22000 years B.P.) in isolated refugia with subsequent recolonization of the present area. FST in the populations examined was 10.16%, which is comparable to the estimate for Larix sibirica (7.9%), a conifer species having a similar range and pattern of geographic population differentiation.     

Variability of nonmetric traits of musk deer <Emphasis Type="Italic">Moschus moschiferus</Emphasis> L. (Moschidae,Cetartiodactyla) craniums

Variation in 15 phenotypic traits is investigated in 349 craniums of seven geographic populations. Differences between geographic populations are ascertained, and phenotypic peculiarities of the subspecies are determined by principal component analysis and cluster analysis using the measure of the contribution to variability of populations and of subspecies similarity. Variations in populations of the Siberian and Himalayan subspecies in nonmetric characters are established. Differences between the craniums from populations are shown to be manifested to a greater degree than between the craniums of subspecies. The analysis of nonmetric characters showed the lack of a rare phene as a diagnostic feature of the musk deer.     

Cytogenetic differentiation of natural populations of <Emphasis Type="Italic">Chironomus obtusidens</Emphasis> (Diptera,Chironomidae)

The cytogenetic structure of Siberian and European populations of Chironomus obtusidens Goetgh. was studied. The clear differentiation of these populations was revealed using quantitative analysis of sets and frequencies of inversion banding sequences. The Siberian populations were found to have six new inversion sequences, and the alternative obtG2 sequence dominated instead of the main obtG1 sequence typical of European populations. In general, chromosomal polymorphism was 3–4 times higher in the Siberian populations. Therefore, the cytogenetic distances (Dcg) between the Siberian and European populations were higher (Dcg 0.059–0.097) than Dcg between the populations in each of the geographic zones investigated (Dcg 0–0.015). The NJ phylogenetic tree constructed for the chromosomal evolution of the genus Chironomus demonstrates that Chironomus obtusidens is the most divergent member among Palaearctic species of the obtusidens group. In addition, it is closer related to the Nearctic Ch. decorus group.     

Genetic variation and population differentiation in Siberian fir Abies sibirica ledeb. inferred from allozyme markers

Genetic variation in 24 populations of Siberian fir Abies sibirica Ledeb. from the Urals, West Siberia, East Siberia, South Siberia, and the Baikal region were examined using allozyme markers. Three out of fifteen allozyme loci proved to be polymorphic. Heterozygosity H _e was 6.6–9.6%, which is substantially lower than that in other widely spread boreal conifers. Our results suggest that the Siberian fir populations are subdivided into four geographic groups: (1) the Baikal Lake group, (2) the Sayan and the Altai group, (3) the Middle and Southern Urals group, and (4) Subpolar and Northern Urals group. This pattern of geographic differentiation may be explained by the preservation of the Siberian fir during the last glacial maximum (18 000–22 000 years B.P.) in isolated refugia with subsequent recolonization of the present area. F _ST in the populations examined was 10.16%, which is comparable to the estimate for Larix sibirica (7.9%), a conifer species having a similar range and pattern of geographic population differentiation.     

Character displacement in sailfin mollies, <Emphasis Type="Italic">Poecilia latipinna</Emphasis>: allozymes and behavior

Synopsis We analyzed variation in allozymes and mating preferences in 12 populations across much of the range of the sailfin molly, Poecilia latipinna. Sailfin mollies can be sympatric with its sexual parasite Amazon mollies, P. formosa. Amazon mollies must co-exist and mate with bisexual males of closely related species (including sailfin mollies) to induce embryogenesis but inheritance is strictly maternal. Where sailfin and Amazon mollies are sympatric there is evidence of reproductive character displacement as males show a significantly stronger mating preference for sailfin molly females over Amazon mollies compared to preferences of males from allopatric populations. From the allozyme data we found a moderate amount of genetic variation across all populations but this variation did not reveal significant partitioning between sympatric and allopatric populations. Additionally, we found no evidence for isolation by distance as genetic distance was not significantly correlated with geographic distance. While allozyme variation also did not significantly correlate with male mating preferences, there was a significant correlation between male mating preferences and geographic distance. This correlation between mating preferences and geographic distance may have arisen from coevolution with Amazon mollies resulting in reproductive character displacement. Taken together, the distribution of genetic and behavioral variation among sympatric and allopatric populations suggests that behavioral evolution has outpaced evolution at the allozyme loci we examined in P. latipinna.     

Comparative mtDNA sequence (control region, ATPase 6 and NADH‐1) divergence in Hucho taimen(Pallas) across four Siberian river basins

Hucho taimen from eight populations spanning four drainage basins (Amur, Lena, Enisei and Khatanga) were analysed for nucleotide sequence variation across three mitochondrial genes (ATP6, NADH‐1 and control region). Samples of H. hucho , Brachymystax lenok (sharp‐snouted and blunt‐snouted forms) and Parahucho perryi were also included for comparison. Nucleotide variation across a total of 1826 base pairs in H. taimen revealed shared haplotypes between the Amur and Lena basins, further supporting a previous hypothesis of late to post‐Pleistocene hydrological exchange between these now disjunct basins. In contrast to an earlier study using the control region alone, clear phylogeographic structure was seen at a large geographic scale, reflected by two phylogroups, one corresponding to the Amur and Lena basins, and the other to the Enisei and Khatanga basins. Comparative rates of divergence revealed considerably faster and less heterogeneous substitution rates for the two coding genes, especially at interspecific levels compared to the mtDNA control region.     

Age and growth of Siberian sculpin (Cottus poecilopus) and young brown trout (Salmo trutta) in a subalpine Norwegian river

Age, growth and density of Siberian sculpin (Cottus poecilopus) and young brown trout (Salmo trutta) within two sections of River Atna; above Lake Atnsjøen [Section 1 at altitudes between 739 and 715 m] and below Lake Atnsjøen [Section 2 at altitudes between 430 and 370 m] was studied during a 6-year period (1986–91). The water temperature was considerably lower in Section 1 than in Section 2, as the number of days with a water temperature above 10?°C (T _{D ≥ 10?° C} ) from spring to August 1 ranged between 2–26 and 26–52 days, respectively. Juvenile brown trout (age 0+) attained a significantly smaller body size in Section 1 than in Section 2; mean length ±SD was 35 ± 8 mm (ranged 27–46) and 43 ± 7 mm (range 38–46), respectively. In Section 2, there was a highly positive correlation between the body length of 0+ brown trout and mean water temperature in June (p<0.005), and also to some extent in Section 1 (p=0.11). Individuals of age 1+ did not exhibit any such difference, while fish in age group 2+ were larger in Section 1 than in Section 2. By using the number of days with a water temperature between the range 5–10?°C (T _{D ≥ 5 ? 10?° C} ) as test variables, we found a highly positive correlation between the August 1 body length of 0+ brown trout and T _{D ≥ 9}?°C from spring to August 1 in Section 2 (p<0.05), as opposed to T _{D ≥ 7}?°C for trout in Section 1 (p=0.11). Young Siberian sculpin (age 0+ and 1+) also exhibited slower growth in Section 1 than in Section 2, but this was not the case among older specimens. In the year with the lowest temperature measured (1987), no 0+ Siberian sculpin were caught in any of the two sections, indicating that low temperature affects their survival. Both species exhibited large spatial and temporal variation in density. Thus, data on abundance and growth sampled on one occasion at one site can not be regarded as representative for these two fish populations.     

Karyological characteristics of Siberian fir (<Emphasis Type="Italic">Abies sibirica</Emphasis> Ledeb.) in Central Siberia

Data are presented on the karyotype structure of the Siberian fir (Abies sibirica Ledeb.) from five populations of the Central Siberia. The chromosome set (2n = 24) contains seven pairs of metacentric (I–VII), four pairs of submetacentric (VIII and X–XII), and one pair of intercentric (IX) chromosomes. The morphometric parameters of the identified chromosome groups had close values in the studied populations. The variation coefficients of chromosomal parameters of the Siberian fir correspond to very low and low variability. The intraspecific chromosome polymorphism of the Siberian fir is connected mainly to variations in the number and peculiarities of the nucleolar organizing regions of chromosomes. In the territory with technogenic loading, a wide spectrum of genomic mutations of the mixoploidy type was observed in the seed off-spring of the Siberian fir; triploid seedlings, as well as rare cases of somatic reduction of chromosomes, were revealed.     

Mitochondrial DNA diversity in Siberian Tatars of the Tobol-Irtysh basin

Data on the variation of the nucleotide sequence of hypervariable segment I (HVSI) and restriction fragment length polymorphism (RFLP) of the coding region of mitochondrial DNA (mtDNA) have been used to characterize the mitochondrial gene pool of Siberian Tatars of the Tobol-Irtysh basin (N = 218), one of three geographic/linguistic groups of Siberian Tatars. The gene pool of Siberian Tatars has been shown to contain both Asian and European mtDNA lineages at a ratio of 1.0 : 1.5. The mtDNA diversity of Siberian Tatars is substantially higher than that of other Turkic-speaking populations of North and Central Asia. The position of the mitochondrial gene pool of Tatars of the Tobol-Irtysh basin in the genetic space of northern Eurasia populations has been determined.