宏基因组学在微生物活性物质筛选中的应用

采用传统分离培养筛选微生物新活性物质的方法受到很大制约,自然界99%以上的微生物不能培养,其资源开发受到很大限制。环境微生物宏基因组技术应用避开了微生物分离纯培养问题,极大拓展了微生物资源的利用空间,增加获得新活性物质的机会和途径。本文着重介绍宏基因组的概念、研究策略包括DNA提取、文库构建与筛选等及在微生物活性物质筛选中的应用,并对宏基因组研究中存在的问题进行探讨。     

Pharmaceutically active secondary metabolites of marine actinobacteria

Marine actinobacteria are one of the most efficient groups of secondary metabolite producers and are very important from an industrial point of view. Many representatives of the order Actinomycetales are prolific producers of thousands of biologically active secondary metabolites. Actinobacteria from terrestrial sources have been studied and screened since the 1950s, for many important antibiotics, anticancer, antitumor and immunosuppressive agents. However, frequent rediscovery of the same compounds from the terrestrial actinobacteria has made them less attractive for screening programs in the recent years. At the same time, actinobacteria isolated from the marine environment have currently received considerable attention due to the structural diversity and unique biological activities of their secondary metabolites. They are efficient producers of new secondary metabolites that show a range of biological activities including antibacterial, antifungal, anticancer, antitumor, cytotoxic, cytostatic, anti-inflammatory, anti-parasitic, anti-malaria, antiviral, antioxidant, anti-angiogenesis, etc. In this review, an evaluation is made on the current status of research on marine actinobacteria yielding pharmaceutically active secondary metabolites. Bioactive compounds from marine actinobacteria possess distinct chemical structures that may form the basis for synthesis of new drugs that could be used to combat resistant pathogens. With the increasing advancement in science and technology, there would be a greater demand for new bioactive compounds synthesized by actinobacteria from various marine sources in future.     

Early Carboniferous plants of the Arkhangelsk Region,Russia

Eight species of fossil plants are described for the first time from the Lower Carboniferous of the Arkhangelsk Region. One of these species, Adiantites lisitzynii O. Orlova et Jurina, is new. The taxonomic composition of the assemblage of 20 species indicates a woody vegetation of the Euramerian aspect. The rich assemblage recovered for the first time from terrigenous deposits of the Arkhangelsk Region dates them to the Visean (Early Carboniferous).     

利用海洋硅藻生产生物活性物质研究进展*

生物活性物质在食品、饵料、化妆品、保健品和医药等行业具有广阔的应用前景,其研究早已受到广泛关注。鉴于海洋硅藻具有生长速度快、生物活性物质含量高、易于规模培养、便于提取等诸多优势,为理想的生物活性物质生产者。尽管国内外已进行了大量利用海洋硅藻生产生物活性物质的研究,但是受限于培养工艺老旧、生产成本过高等缺陷,商业化利用海洋硅藻开发生物活性物质依然停滞不前。阐述海洋硅藻五种常见生物活性物质的应用价值,进一步探讨海洋硅藻高产生物活性物质的策略,就如何低成本、高效开发利用硅藻源生物活性物质提出建议,为海洋硅藻商业化开发利用提供参考。     

Marine microorganisms as an untapped source of bioactive compounds

The search for novel biologically active molecules has extended to the screening of organisms associated with less explored environments. In this sense, Oceans, which cover nearly the 67% of the globe, are interesting ecosystems characterized by a high biodiversity that is worth being explored. As such, marine microorganisms are highly interesting as promising sources of new bioactive compounds of potential value to humans. Some of these microorganisms are able to survive in extreme marine environments and, as a result, they produce complex molecules with unique biological interesting properties for a wide variety of industrial and biotechnological applications. Thus, different marine microorganisms (fungi, myxomycetes, bacteria, and microalgae) producing compounds with antioxidant, antibacterial, apoptotic, antitumoral and antiviral activities have been already isolated. This review compiles and discusses the discovery of bioactive molecules from marine microorganisms reported from 2018 onwards. Moreover, it highlights the huge potential of marine microorganisms for obtaining highly valuable bioactive compounds.     

Assessing the diversity of bacterial communities from marine sponges and their bioactive compounds

Symbiotic bacteria play vital roles in the survival and health of marine sponges. Sponges harbor rich, diverse and species-specific microbial communities. Symbiotic marine bacteria have increasingly been reported as promising source of bioactive compounds. A culturomics-based study was undertaken to study the diversity of bacteria from marine sponges and their antimicrobial potential. We have collected three sponge samples i.e. Acanthaster carteri, Rhytisma fulvum (soft coral) and Haliclona caerulea from north region (Obhur) of Red Sea, Jeddah Saudi Arabia. Total of 144 bacterial strains were isolated from three marine sponges using culture dependent method. Screening of isolated strains showed only 37 (26%) isolates as antagonists against oomycetes pathogens (P. ultimum and P. capsici). Among 37 antagonistic bacteria, only 19 bacterial strains exhibited antibacterial activity against human pathogens (Methicillin-resistant Staphylococcus aureus (MRSA) ATCC 43300, Pseudomonas aeruginosa ATCC 27853, Escherichia coli ATCC 8739, Enterococcus faecalis ATCC 29212). Four major classes of bacteria i.e γ-Proteobacteria, α-Proteobacteria, Firmicutes and Actinobacteria were recorded from three marine sponges where γ-Proteobacteria was dominant class. One potential bacterial strain Halomonas sp. EA423 was selected for identification of bioactive metabolites using GC and LC-MS analyses. Bioactive compounds Sulfamerazine, Metronidazole-OH and Ibuprofen are detected from culture extract of strain Halomonas sp. EA423. Overall, this study gives insight into composition and diversity of antagonistic bacterial community of marine sponges and coral from Red Sea and presence of active metabolites from potential strain. Our results showed that these diverse and potential bacterial communities further need to be studied to exploit their biotechnological significance.     

海洋细菌活性物质的研究进展

由于海洋细菌有产生多种新颖独特的生物活性物质的巨大潜力,使其成为新药筛选的重要资源,在药品开发研究中具有良好的发展前景。综述了海洋细菌中具有药物开发前景的活性物质的研究和应用现状及其存在的问题。     

青藏高原红景天属植物药材中五种有效成分HPLC分析(英文)

为了比较红景天属不同红景天药材的有效成分的差异,采用HPLC-DAD法建立了同时测定青藏高原14种红景天属药材中红景天苷、酪醇、没食子酸、儿茶素、表儿茶素含量的方法.色谱柱为Phenomenex Luna C18(250×4.6 mm,5μm);以甲醇-水为流动相,梯度洗脱;流速为1.0 mL/min;检测波长为276 nm;柱温为30℃。结果表明,在五种化合物在选定的条件下能得到较好的分离,线性关系良好。方法回收率在97.36%以上,RSD小于2.31%。该方法简单快速,可为红景天属药材的质量控制提供科学依据。     

DNA-binding studies of mixed-ligand (ethylenediamine)ruthenium(II) complexes

A series of mixed-ligand ruthenium(II) complexes of the type [Ru(en)(2)bpy](2+) (bpy=2,2-bipyridine; 1), [Ru(en)(2)phen](2+) (phen=1,10-phenantroline; 2), [Ru(en)(2)IP](2+) (IP=imidazo[4,5-f][1,10]phenanthroline; 3), and [Ru(en)(2)PIP](2+) (PIP=2-phenylimidazo[4,5-f][1,10]phenanthroline; 4) have been isolated and characterized by UV/VIS, IR, and (1)H-NMR spectral methods. The binding of the complexes with calf thymus DNA has been investigated by absorption, emission spectroscopy, viscosity measurements, DNA melting, and DNA photo-cleavage. The spectroscopic studies together with viscosity measurements and DNA melting studies support that complexes 1 and 2 bind to CT DNA (=calf thymus DNA) by groove mode. Complex 2 binds more avidly to CT DNA than complex 1, complexes 3 and 4 bind to CT DNA by intercalation mode, 4 binds more avidly to CT DNA than 3. Noticeably, the four complexes have been found to be efficient photosensitisers for strand scissions in plasmid DNA.     

Prospecting Anticancer Compounds in Actinomycetes Recovered from the Sediments of Saint Peter and Saint Paul's Archipelago,Brazil

Saint Peter and Saint Paul's Archipelago is a collection of 15 islets and rocks remotely located in the equatorial Atlantic Ocean. In this particular site, the present project intended to assess the biodiversity and biotechnological potential of bacteria from the actinomycete group. This study presents the first results of this assessment. From 21 sediment samples, 268 strains were isolated and codified as BRA followed by three numbers. Of those, 94 strains were grown in liquid media and submitted to chemical extractions with AcOEt (A), BuOH (B), and MeOH (M). A total of 224 extracts were screened for their cytotoxic activity and 41 were significantly active against HCT‐116 cancer cells. The obtained IC₅₀ values ranged from 0.04 to 31.55 μg/ml. The HR‐LC/MS dereplication analysis of the active extracts showed the occurrence of several known anticancer compounds. Individual compounds, identified using HR‐MS combined with analysis of the AntiMarin database, included saliniketals A and B, piericidins A and C and glucopiericidin A, staurosporine, N‐methylstaurosporine, hydroxydimethyl‐staurosporine and N‐carbamoylstaurosporine, salinisporamycin A, and rifamycins S and B. BRA‐199, identified as Streptomyces sp., was submitted to bioassay‐guided fractionation, leading to isolation of the bioactive piericidins A and C, glucopiericidin, and three known diketopiperazines, cyclo(l ‐Phe‐trans‐4‐OH‐l ‐Pro), cyclo(l ‐Phe‐l ‐Pro), and cyclo(l ‐Trp‐l ‐Pro).     

A preliminary list of the Muscidae (Diptera) of the Magadan region,Russia

A preliminary list is given of the species of the Muscidae (Diptera) of the Magadan region, including 93 species in 23 genera. Eighty-one species are newly recorded from this territory. Six species [Spilogona aenea Huckett, 1965, S. bifimbriata Huckett, 1965, S. fulvibasis Huckett, 1965, S. incerta Huckett, 1965, S. separata Huckett, 1965, S. trigonifera (Zetterstedt, 1838)] are newly recorded for Russia. All these species, except Spilogona trigonifera, are newly recorded for the Palaearctic region. The species list includes the material examined, ecological data of some species, the distribution and all known references to each species. According to preliminary estimates, this list reflects 60% of expected species in the Magadan region. Two new synonyms are proposed: Coenosia shumshuensis Shinonaga & Zhang, 2000, n. syn. for C. alaskensis Huckett, 1965, and Coenosia remissa Huckett, 1965, n. syn. for C. ciliata Hennig 1961.     

中国东海和南海海域可培养烃类降解细菌的筛选及功能

【背景】海洋环境中蕴藏着丰富的微生物资源,其种类繁多而且功能多样,在驱动物质循环及能量流动等方面起着重要的作用。目前,海洋中烷烃化合物降解菌的分离筛选和降解功能研究已有文献报道;但是对海洋中尤其是我国东海和南海海域,具有降解芳香烃类化合物功能的菌株分离筛选及其多样性研究鲜有报道。【目的】分离筛选我国东海和南海海域具有烃类降解能力的可培养菌株,并对其降解功能和多样性进行初步研究。【方法】分别从东海和南海海底沉积物样品中筛选菌株,选择不同的烃类化合物为菌株筛选的唯一碳源,采用梯度稀释和平板划线法分离纯化得到单菌落,并利用相应烃类为唯一碳源进行生长验证获得该化合物降解菌。【结果】以肉桂酸、碱木素、十六烷等12种烃类化合物为唯一碳源,从样品中共分离到63株具有烃类化合物降解能力的菌株,分别属于3个门4个纲8个目10个属,主要为红球菌属(Rhodococcus)、不动杆菌属(Acinetobacter)、弧菌属(Vibrio)、盐单胞菌属(Halomonas)、假单胞菌属(Pseudomonas)。两大海域优势降解菌差别较大,其中东海沉积物降解菌株主要为不动杆菌属(Acinetobacter),而南海沉积物降解菌株主要为红球菌属(Rhodococcus)。【结论】我国东海和南海海域蕴藏着丰富的烃类化合物降解菌株资源,两大海域优势降解菌种类存在明显差异,这将为我国未来可能的海洋环境石油污染的微生物治理储备菌种资源。     

Dispersal strategies in sponge larvae: integrating the life history of larvae and the hydrologic component

While known to be uniformly non-feeding, short-lived, and potentially short dispersing, sponge larvae display different behaviours (swimming ability and taxis). Our aim was to show whether sponge larvae with different behaviours exhibit different dispersal strategies under variable intensity of water movements. We first assessed the distribution of larvae of six taxa: Dictyoceratida spp., Dysidea avara, Crambe crambe, Phorbas tenacior, Scopalina lophyropoda, and Cliona viridis, collected through plankton sampling, and the abundance of the corresponding adult sponges across three hard bottom communities and a sandy bottom from a north-west Mediterranean rocky shore. We then tested adult–larvae couplings (abundance of larvae vs abundance of adults) under increasing levels of water movements (surge) to assess the importance of this environmental factor in driving differences in dispersal strategies. Adults of Dictyoceratida spp., D. avara, and P. tenacior were most abundant in semi-dark caves (SDC), C. crambe and C. viridis in communities of sciaphilic algae (SA), whereas the distribution of S. lophyropoda was extremely patchy, being present almost only in the SA community of one of the five stations studied. Larvae of Dictyoceratida spp. and P. tenacior were more abundant in the SDC, whereas D. avara and C. crambe were homogeneously distributed across the communities. The larvae of C. viridis were more abundant in the SA communities and the S. lophyropoda larvae were mostly present in one station and one community (SA). Increased water movement did not modify the adult–larvae coupling for Dictyoceratida spp., D. avara, and C. crambe, whereas it broke up the positive association for P. tenacior and to some extent S. lophyropoda. For C. viridis, possible variability in adult–larvae coupling was not tested because the larvae were collected on only one day under calm sea conditions. We confirm that efficient-swimming larvae with some cue response can actively counteract hydrodynamic forces and highlight the importance of both larval behaviour and environmental conditions in determining small-scale patterns of dispersal.     

海洋微生物多样性及其分子生态学研究进展

海洋微生物多样性的深入研究将有助于微生物资源更好的开发和利用,海洋微生物多样性有很大的研究价值和研究空间。海洋中大多数微生物处于未可培养状态,在分子生态学基础上对海洋未可培养微生物进行研究是当今微生物多样性研究的主要方向。近年来相关研究进展迅速,研究方法不断更新。主要从分子生态学角度对微生物多样性研究现状进行概述并详细分析探讨了相关的研究方法,而且从分子生态学与海洋微生物多样性研究相结合的层面,对本领域的研究进行展望。旨在为海洋微生物多样性的研究及海洋资源的可持续开发与利用提供参考。     

海洋环境中难培养微生物的寡营养培养

海洋中存在着丰富的微生物资源, 但迄今为止能够在实验室培养的微生物却不到1%, 而且能够通过培养得到的环境优势种更少, 这成为当代环境微生物学研究和海洋资源开发的最大障碍。过去十多年来, 通过不断改进培养方法和检测手段, 发明了许多新颖独特的技术, 提高了培养效率。特别是通过海洋微生物的寡营养培养技术, 分离并命名了一些难培养微生物, 给予人们极大的启发。海洋微生物资源的可持续性开发和利用, 是21世纪人类发展的重要方向, 是我们研究海洋微观世界的基础, 值得微生物学界同仁的共同关注。     

Microencapsulation of purple Brazilian cherry juice in xanthan,tara gums and xanthan-tara hydrogel matrixes

The purple Brazilian cherry (Eugenia uniflora L.) juice was encapsulated in xanthan, tara and xanthan-tara hydrogel matrixes. Encapsulation efficiency, Differential Scanning Calorimetry (DSC), X-ray diffractometry, release profile, stability of carotenoids, phenolic compounds and antioxidant activity of microparticles were evaluated. Encapsulation was confirmed. The highest encapsulation efficiency was obtained with xanthan gum and hydrogel was mostly indicated for the release of carotenoids in GFS and IFS medium. Phenolic compounds had the highest release rate but not in a gradually way, regardless of wall material and fluids under analysis. Stored microparticles at 4 and 25 °C, showed carotenoid degradation. Xanthan and hydrogel wall material provided the greatest stability to these compounds. The microparticles’ anti-oxidant activity decreased during storage due to the degradation of carotenoids.     

Biotechnological production of the angiotensin‐converting enzyme inhibitory dipeptide isoleucine‐tryptophan

Peptides with angiotensin‐converting enzyme (ACE)‐inhibitory and antihypertensive effects are suggested as innovative food additives to prevent or treat hypertension. Currently, these substances are isolated from food proteins following nonselective hydrolysis as a mixture of ACE‐inhibitory peptides and other protein fragments. This study presents an innovative biotechnological method, based on recombinant DNA technology that was established to specifically produce the ACE‐inhibitory dipeptide isoleucine‐tryptophan. In a first step, a repetitive isoleucine‐tryptophan construct fused to the maltose‐binding protein was generated and expressed in Escherichia coli BL21 cells. The chromatographically purified recombinant fusion protein was enzymatically hydrolyzed using α‐chymotrypsin to liberate the dipeptide isoleucine‐tryptophan. The identity of the liberated isoleucine‐tryptophan was confirmed by MS and derivatization of its N‐terminus. The ACE‐inhibitory effect of the recombinant dipeptide on soluble and membrane bound ACE was found to be indistinguishable from the inhibitory potential of the chemically produced commercially available dipeptide. The established experimental strategy represents a promising approach to the biotechnical production of sufficient amounts of recombinant peptide‐based ACE‐inhibitory and antihypertensive substances that are applicable as functional food additives to delay or even prevent hypertension.     

Leaf litter breakdown budgets in streams of various trophic status: effects of dissolved inorganic nutrients on microorganisms and invertebrates

1. We investigated the effect of trophic status on the organic matter budget in freshwater ecosystems. During leaf litter breakdown, the relative contribution of the functional groups and the quantity/quality of organic matter available to higher trophic levels are expected to be modified by the anthropogenic release of nutrients. 2. Carbon budgets were established during the breakdown of alder leaves enclosed in coarse mesh bags and submerged in six streams: two oligotrophic, one mesotrophic, two eutrophic and one hypertrophic streams. Nitrate concentrations were 4.5–6.7 mg L⁻¹ and the trophic status of each stream was defined by the soluble reactive phosphorus concentration ranging from 3.4 (oligotrophic) to 89 μg L⁻¹ (hypertrophic). An ammonium gradient paralleled the phosphate gradient with mean concentrations ranging from 1.4 to 560 μg L⁻¹ NH₄‐N. The corresponding unionised ammonia concentrations ranged from 0.08 to 19 μg L⁻¹ NH₃‐N over the six streams. 3. The dominant shredder taxa were different in the oligo‐, meso‐ and eutrophic streams. No shredders were observed in the hypertrophic stream. These changes may be accounted for by the gradual increase in the concentration of ammonia over the six streams. The shredder biomass dramatically decreased in eu‐ and hypertrophic streams compared with oligo‐ and mesotrophic. 4. Fungal biomass increased threefold from the most oligotrophic to the less eutrophic stream and decreased in the most eutrophic and the hypertrophic. Bacterial biomass increased twofold from the most oligotrophic to the hypertrophic stream. Along the trophic gradient, the microbial CO₂ production followed that of microbial biomass whereas the microbial fine particulate organic matter and net dissolved organic carbon (DOC) did not consistently vary. These results indicate that the microorganisms utilised the substrate and the DOC differently in streams of various trophic statuses. 5. In streams receiving various anthropogenic inputs, the relative contribution of the functional groups to leaf mass loss varied extensively as a result of stimulation and the deleterious effects of dissolved inorganic compounds. The quality/quantity of the organic matter produced by microorganisms slightly varied, as they use DOC from stream water instead of the substrate they decompose in streams of higher trophic status.     

子午岭种子植物区系分析

子午岭林区计有种子植物94科361属689种。其中裸子植物3科8属10种1变种;被子植物91科353属678种。中国特有属8个,特有种271个,子午岭特有种1个。其种子植物区系的基本特征是：植物种类相对丰富;区系成分复杂,多种成分交汇;区系组成以华北成分为主体,以温带成分占优势;南北区系成分存在差异,垂直分布带谱不明显;在中国植物区系上隶属于泛北极植物区中国-日本森林植物亚区的华北地区黄土高原植物亚地区。     

Antioxidant and antibacterial activities of the chlorine pigment sclerotiorin from Penicillium mallochii and its chemotaxonomic significance

Penicillium mallochii was isolated as an endophyte from Himatanthus sp. and inoculated in liquid potato-dextrose culture medium, with adjusted to pH 3.6, and incubated for 10 days at 24 °C. Successive column chromatography of the hexane extract afforded the chlorine pigment sclerotiorin. Its structure was determined by NMR and by comparison with the literature. Sclerotiorin showed moderate antioxidant activity and moderate antibacterial against Bacillus subtilis, Staphylococcus aureus, and Micrococcus luteus. The isolation of sclerotiorin from P. mallochii support the taxonomic classification within the Penicillium genus, demonstrating a closer evolutionary relationship among the Penicillium species. Therefore, we suggest that sclerotiorin and the sclerotiorin group of metabolites may be used as chemotaxonomic markers for proper identification of Penicillium species.