Crown-of-thorns starfish outbreaks on the Great Barrier Reef: a geological perspective based upon the sediment record

Over the last 30 years, the crown-of-thorns starfish (Acanthaster planci) has caused extensive damage to many reefs in the Great Barrier Reef Province. Surface sediment of two such reefs, John Brewer Reef and Green Island Reef, has high densities of A. planci skeletal elements relative to their abundance in the surface sediment of Heron Island Reef which, during the same 30 years, maintained very low-density starfish populations. Carbon-14 accelerator mass spectrometry (AMS) dating indicates that skeletal elements from the surface sediment of John Brewer and Green Island Reefs are of contemporary age. Core sampling shows that subsurface sediment at John Brewer and Green Island Reefs contains A. planci element densities comparable to those found in the surface sediment at these localities. Physical and biological eworking of elements within the sediment precludes the recognition of individual outbreaks in core stratigraphy. AMS element dates and conventional bulk sediment dates show that subsurface elements are generally prehistoric and conform to an age structure preserved in the sediment pile. The density and distribution of subsurface elements suggest that A. planci outbreaks are not a recent phenomenon, but have been an integral part of the ecosystem for at least 7000 years on John Brewer Reef and 3000 years on Green Island Reef.     

The effect of tubificids and chironomids on particle redistribution of lake sediment

The effects of chironomid larvae,Chironomus plumosus, and tubificid worms,Limnodrilus spp., on particle redistribution in lake sediment were investigated experimentally using pots containing sediments obtained from Lake Suwa, Japan. The chironomids and tubificids increased the water content of surface sediment. The chironomid larvae had no effect on particle size distribution, while tubificids continuously accumulated small particles on the surface sediment through their selective feeding activity. Particles larger than 0.125 mm were buried at a sediment depth of 6 cm. In Lake Suwa, long diatom frustules, large plant debris and blue-green algal flocs were found to accumulate in the deeper layer of the lake sediment inhabited by tubificids at high density.     

Vertical-migration patterns of flagellates in a community of freshwater benthic algae

The population densities of sediment-inhabiting flagellates sampled from a shallow eutrophic lake in April 1986 were investigated at intervals of 1 or 1.5 h over a twenty hour period in the laboratory under natural irradiance and in controlled conditions. In natural irradiance the flagellates exhibited a vertical migration rhythm up onto the sediment surface after dawn and down into the sediment during the afternoon. Details of the timing of the migration movements and period of time flagellates were present on the sediment surface differed between species and five flagellate groups: trachelomonads, green euglenoids, Chamydomonads, chrysophytes and cryptomonads. During daylight, twenty-seven species maintained population maxima at the surface of the sediment on eight occasions. The species composition of these maxima differed and eight species were found to have two maxima on the surface of the sediment at different times of day. Numbers of three species of chrysophycean flagellates and Rhodomonas minuta increased again on the sediment surface after dark. Under continuous irradiance at 10°C, the migration cycle of all five groups of flagellates was affected. Some evidence for an endogenous nature of this rhythm was found for green euglenoids and Chamydomonads. Numbers of chrysophytes, particularly Synura spp. increased in constant light in the surface layers of sediment.Thus a mosaic of vertical migration patterns was described in an epipelic community of algae dominated by five groups of flagellates. The importance of this in the survival strategy and ecology of these sediment-inhabiting algae is discussed.     

Food selection of Tanytarsus gracilentus larvae (Diptera: Chironomidae): An analysis of instars and cohorts

Gut contents of the detritivorous Tanytarsus gracilentus larvae were studied at one site in Lake Myvatn, Iceland. Samples were collected with a sediment corer. Sediment samples were taken from the surface of the intact core before the larvae were collected. Gut contents were compared between different larval instars and cohorts, and to the surface sediment. The composition of the gut contents of all instars was different from that of the sediment surface. The first instar selected small diatoms of the genus Fragilaria, as single and paired cells, and the fourth instar selected detritus items of more variable size and origin. Apart from the third instar larvae, there were similar trends in food selectivity between the same instar of different cohorts. No major changes occurred in the composition of the surface sediment during the time of this study.     

Hydroelectricity and fish: a synopsis of comprehensive studies of upstream and downstream passage of anadromous wild Atlantic salmon, <Emphasis Type="Italic">Salmo salar</Emphasis>, on the Exploits River,Canada

Microalgal biofilms are associated with considerable variability in the properties of natural sediments, yet little effort has been made to isolate micro-scale spatial and temporal changes in sediment properties caused by the growth of a biofilm. Understanding the changes associated with biofilm growth and quantifying the time scales over which these changes occur is important for developing suitable experimental designs and for understanding how biofilms mediate sediment properties and processes. The development of a microphytobenthic biofilm and associated changes in the sediment was investigated over 45 days in the laboratory. The biogeochemical properties of the sediment: bulk density, water content, chlorophyll a concentration and colloidal carbohydrate concentration were measured on a sub-millimetre scale in the top 2 mm. The erosion threshold was measured with a Cohesive Strength Meter (CSM). Biofilm development was rapid, with changes in the properties occurring after 1 day and a visible film forming after just 3 days. The largest changes in sediment properties tended to occur in the surface 200 μm through time, with some variables also showing a differing response with depth. There were significant changes in water content, chlorophyll a concentration, colloidal carbohydrate concentration and erosion threshold in the surface 2 mm, with a general trend to increase with time. Bulk density was highly variable and did not show a consistent pattern of change with time. Erosion threshold was positively correlated with water content, chlorophyll a and colloidal carbohydrate in the surface 200 μm and these were also positively correlated with each other. Low Temperature Scanning Electron Microscopy (LTSEM) images revealed changes in the surface sediment structure and the formation of a thick multi-layer biofilm. The rapidity of biofilm growth and development and the associated changes to the sediment should be considered when designing experiments that investigate biofilms and properties of sediments and/or that involve biocide treatments or disturbance to the sediment.     

Molecular evidence demonstrating the basidiomycetous fungus Cryptococcus curvatus is the dominant microbial eukaryote in sediment at the Kuroshima Knoll methane seep

The Kuroshima Knoll, located in the southern Ryukyu Arc, is known to actively bubble with gas containing methane and hydrogen sulfide from numerous fissures in the large carbonate pavement. Although ecological studies regarding macrobenthos and bacteria from Kuroshima Knoll have been intensively conducted, the community structure and ecological importance of microbial eukaryotes (protists) have not yet been investigated. In the present study, we directly extracted DNA from sediment of the Kuroshima Knoll at a depth of 640 m and constructed genetic libraries of PCR-amplified eukaryotic small-subunit ribosomal DNA (SSU rDNA). Although the SSU rDNA sequences of several types of benthic foraminifers were retrieved from the surface of the sediment, all other sequences (just below the sediment surface to approximately 9 cm below sediment surface) were derived from the basidiomycetous yeast Cryptococcus curvatus. Furthermore, sequences of the internal transcribed spacer of rDNA (ITS-rDNA) retrieved from the same sediment were identical to that of C. curvatus originating from terrestrial habitats. The diversity of microbial eukaryotes in the Kuroshima Knoll sediment seems to be extremely low and significantly different from that of other marine environments previously reported.     

The influence of the diel activity pattern of the larvae of Sericostoma personatum (Kirby & Spence) (Trichoptera) on organic matter distribution in stream-bed sediments — a laboratory study

Diel patterns in mobility and feeding behaviour of the larvae of the stream-dwelling trichopteran Sericostoma personatum larvae were investigated. Larvae fed at night on coarse particulate organic matter (CPOM) at the sediment surface. In the daytime they rested a few cm below the sediment surface, during which time their defaecation activity effected a release of fine particulate organic matter (FPOM) into the sediment. The amount of faeces (mean particle size = 0.1 ± 0.044 mm, x ± SD, n = 500) introduced into the sediment by the larvae, evaluated in two experiments, was 0.4–0.56 mg day^–1. This amount did not differ significantly from the organic input resulting from bacterial activity (0.36–0.64 mg day^–1). The presence of S. personatum larvae increased the sediment organic content by 42.9 mg (75.8 %) and 59.8 mg (185.6%) AFDW per 16 cm³ sediment over a 90-day period, as compared with control systems containing no larvae.     

Effect of bioturbation on denitrification in a marine sediment from the West Mediterranean littoral

Thein vitro effect ofNereis diversicolor on denitrification has been studied in PVC tubes filled with a coastal marine sediment defaunated by sieving. The first aim of the experiment was to determine the effect of sediment defaunation on denitrification (denitrifying population and Denitrifying Enzyme Assays). Sieving induced a loss of 70% of the initial DEA. The number of denitrifying bacteria was 10 times lower than inin situ sediment. In the top two centimetres, the DEA rose by 75% of its initial value, after 82 days. Polychaetes were only added after a return to near pre-disturbance levels to ensure that our data on the effects of their addition would not be disturbed by changes in the sediment. Introduction of Polychaetes increased the denitrifying population and DEA in the first layer (0–2 cm) of the sediment after 15 days. After 45 days, the surface of the polychaete burrows in sediment was 1.3 to 1.5 times higher than after 15 days, resulting in an increase in solute exchange between seawater and the top layer of sediment. An inhibitory effect of oxygen on denitrification was detected in the uppermost layer only.     

Vertical Migration and Mortality of Marine Benthos in Dredged Material: A Synthesis

This account describes the comparative response of four species of benthic invertebrates to burial in terms of vertical migration and mortality, and provides a synthesis of studies and recommendations upon which to assess future impacts. The species featured were the bivalve Mercenaries mercenaria, the amphipod crustacean Parahaustorius longimerus, and the polychaetes Scoloplos fragilis and Nereis succinea. There was evidence of synergistic effects on burrowing activity and mortality with changes in time of burial, sediment depth, sediment type and temperature. In sediment with silt-clay, N. succinea was the most resistant species followed by M. mercenaria, S. fragilis and P. longimerus. In sediment without silt-clay the order of percent mortality was reversed. Studies of surface water chemistry and sediment geochemistry showed that dissolved oxygen decreased significantly and ammonia and sulfide increased significantly between the surface and below 2.0 cm within a 15-day period. Based on these results and physiological tolerances from the literature it was concluded that M. mercenaria and N. succinea would be relatively resistant to chemical effects of spoil disposal, whereas S. fragilis and P. longimerus would be less resistant to such effects. Vertical migration of benthic invertebrates through dredge disposal can be a viable mechanism of recolonization under certain conditions. Some effects of burial of benthos can be predicted based on morphology, behavior and physiology. These biological features were discussed with examples dealing with molluscs, crustaceans, and polychaetes. Finally, recommendations were made concerning the type of studies to provide additional data to aid management agencies in decision making about future dredging and disposal practices.     

High abundance of small zoobenthos around biogenic structures in tidal sediments of the Wadden Sea

On the tidal flats of the island of Sylt (eastern part of the North Sea) the quantity of micro- and meiofauna associated with shoots of seagrass(Zostera noltii), with infaunal bivalves(Macoma balthica), and with tubes and burrows of polychaetes(Pygospio elegans, Pectinaria koreni, Nereis diversicolor, Nereis virens, Arenicola marina) was found to add up to 5 to 33 % of the overall abundance. These structures, taken together, account for 10 to 50 % of the faunal abundance on an average tidal flat at Sylt. The quantitative effect of biogenic structures at the sediment surface (casts and funnels) is small compared to that of tubes and burrows penetrating the anaerobic subsurface layer. In providing stable oxic microenvironments these elite structures frequently bring together more individuals than occur in the entire reducing sediment below surface. Faunal composition of irrigated dwellings of large infauna is different from that of the oxic surface sediment. The common denominator of all elite structures of the subsurface is an oxic halo. Burrows without such a halo are unattractive. There is no evidence that owners of burrows prey on their smaller inmates.     

Particle size selection and sediment reworking in a funnel feeder,Leptosynapta tenuis (Holothuroidea,Synaptidae)

The burrowing behavior of the holothurian Leptosynapta tenuis, its lebensspuren, and the types of peristaltic waves used in movement and burrow irrigation are described. Particle size selection is a function of accessability of grains. L. tenuis cannot distinguish between particle sizes but nevertheless ingests small particles in a lesser proportion than that found in the surrounding sediment. Feeding rates are 2900–5500 g · yr⁻¹ · animal⁻¹. These rates are strongly dependent on temperature. Computation of a sediment mixing budget shows that of all the sediment ingested, 51% is ingested from the top 1/2 cm of sediment, 75% from the top 3 cm. The significance of the funnel as a ‘tool’ to exploit the top 1/2 cm of sediment is discussed. L. tenuis differs from other deposit feeders in that (1) it removes small particles from the surface sediment during its reworking activities, (2) it reworks sediment downward as well as upward, (3) its reworking activities tend to increase the stability of the upper 3 cm of the sediment, and (4) because so much sediment is ingested from the top 1/2 cm, it reworks an entire sediment column less efficiently per gram of sediment ingested than many other deposit feeders.     

Vertical structure of seed banks and the impact of depth of burial on recruitment in two temporary marshes

The structure of the seed bank (including Chara oospores), in relation to depth within the sediment and disturbance, was studied in two Rhône delta temporary marshes for two years. The seeds of all species were concentrated in the top 2 cm of sediment with very low numbers beeing found below 4 cm. When an exclosure eliminated disturbances of the sediment by animals, the vertical repartition of seeds at site 2 was more pronounced than outside the exclosure.In experiment 1, the emergence capacity of seeds from different depths and buried under layers of sterile equivalent to those in the field was measured. Depending of the species, 22 to 98% of the seeds germinated from unburied seeds in the top 2 cm. Only 1% of the oospores of Chara (from site 2) at 2 to 4 cm depth in the sediment emerged.In experiment 2, surface seed bank samples were placed under 0, 2 or 4 cm sterile sediment depth. The samples contained numerous recent seeds and the emergence percentage reached 41% (for Ruppia maritima). Only the seeds of Zannichellia spp failed to germinate from a depth of 2 cm or more. The emergence percentage from 2 cm depth or more was always lower than at the surface. These experiments showed that both burial and ageing of seeds decrease germination capacity.The majority of the active seeds located at the surface germinate when the marsh is flooded. Seeds located between 2 and 4 cm can be brought back to the surface by disturbances and play the role of a reserve involved in maintenance of populations that go without seed production for one or some years.     

Intra-lake heterogeneity of sedimentary cladoceran (Crustacea) assemblages forced by local hydrology

Intra-lake variation of fossil Cladocera (Crustacea) assemblages in 31 surface sediment samples in Lake Pieni-Kauro and River Saavanjoki, eastern Finland, was examined with an objective to identify habitat specificity of Cladocera in relation to local hydrology-related environmental factors. The surface sediment assemblages showed high levels of heterogeneity, mainly as to water depth and lentic–lotic gradients in the lake–river complex. This was evident from the principal component analysis which indicated a major trend from shallow to deep samples and a secondary trend from lentic to lotic samples, and from redundancy analysis (RDA), which recognized water depth and river flow as the most important environmental variables in explaining cladoceran variability within the dataset. According to the RDA and generalized linear models, Daphnia spp., Bosmina (Eubosmina), and Alona quadrangularis showed association with deep water localities, whereas Bosmina longirostris and Alona affinis preferred littoral habitats. Acroperus harpae and Chydorus sphaericus s.l. appeared to favor lotic habitats. The results propose that littoral taxa are primarily deposited postmortem or after molting close to their shallow water habitats, while planktonic cladocerans accumulate principally in deepwater locations. Accordingly, it appears that in heterogeneous basins intra-lake surface sediment samples integrate locally living fauna that is driven by local hydrology-related factors, such as water depth, sediment properties, macrophytes, and river flow and coupling biotic interactions.     

Vertical distribution of benthic community responses to fish predators, and effects on algae and suspended material

The vertical positioning of benthic invertebrates should be a trade-off between the risky, but productive, sediment surface and the safer, but physiologically harsher, conditions deeper down in the sediment. This is because the foraging efficiency of benthic fish decreases with sediment depth, whereas the sediment surface is generally better oxygenated and has a higher resource quality than lower layers. We studied how two benthic fish predators, bream (Abramis brama) and ruffe (Gymnocephalus cernuus), affected the community composition and vertical distribution of benthos, and their indirect effects on algae and suspended material, in field enclosures. Whereas bream had significant effects on the density, composition and distribution of the benthos, ruffe had no such effects. The total benthos biomass in bream treatments was an-order of magnitude lower in the upper sediment layer (0–1 cm) and three times lower in the middle layer (1–3 cm) than in the controls, whereas there were no significant effects in the deepest layer (3–10 cm). Bivalves persisted in the deepest layer although their density was reduced in shallow sediment, whereas gastropods faced the risk of local extinction in the presence of bream. As indirect effects, small-bodied cladocerans, phytoplankton, periphyton and both organic and inorganic suspended material were higher in the bream treatments. We␣conclude that the impact of bream diminished substantially with increasing sediment depth, enabling invertebrates to survive in the sediment and to persist in the presence of bream. However, there were␣no␣indications of any group adjusting their vertical position behaviourally as a response to predation threat.     

Biodegradation of plastic bottles made from ‘Biopol’ in an aquatic ecosystem under in situ conditions

Experiments have been carried out in Lake Lugano, Switzerland, in order to study the biodegradation of poly(3-hydroxyalkanoates) (PHA) in an aquatic ecosystem under natural conditions. Commercially available plastic articles made from PHA, such as bottles and films, were incubated for 254 days in a water depth of 85 m. Shampoo bottles were positioned precisely on the sediment surface by the use of a small manned submarine. A set of bottles was attached to a buoy in order to incubate plastic material in diffent water depths. When incubated in the water column or on the sediment surface, a life span of five to ten years for this specific bottle type was calculated. In situ degradation rates of 10 to 20 mg/d were determined. PHA films were completely degraded when incubated in the top 20 cm of the sediment. The results clearly demonstrate that in an aquatic ecosystem (water column as well as sediment) under in situ conditions (i.e. low temperatures, seasonal variations of the oxygen concentration) plastic goods made from PHA are degraded.     

Nitrification in Freshwater Sediments as Influenced by Insect Larvae: Quantification by Microsensors and Fluorescence in Situ Hybridization

Sediment-reworking macrofauna can stimulate nitrification by increasing the O₂ penetration into sediments or it can reduce nitrification by grazing on nitrifying bacteria. We investigated the influence of Chironomus riparius larvae (Insecta: Diptera) on the in situ activity, abundance, and distribution of NH₄⁺-oxidizing (AOB) and NO₂^–-oxidizing bacteria (NOB) in two freshwater sediments with microsensors and fluorescence in situ hybridization. In organic-poor sediment, nitrification activity was reduced by the presence of C. riparius larvae, whereas no such effect was detected in organic-rich sediment. We explain this difference with the variable larval burrowing and grazing behavior in the two sediment types: In organic-poor sediment larval activities were intense and evenly distributed across the whole sediment surface, whereas in organic-rich sediment larval activities were locally restricted to the microenvironment of animal burrows. Surprisingly, the animals did not cause any significant change of the abundance of AOB and NOB. This implies that the observed reduction of nitrification activity was not density-regulated, but rather was due to the lowered metabolic activity of the nitrifiers. Partial digestion and redeposition of particle-associated bacteria by C. riparius larvae are believed to have caused this loss of metabolic activity.This revised version was published online in November 2004 with corrections to Volume 48.     

The impact of acidification on Chironomidae (Diptera) as indicated by subfossil stratification

The impact of acidification on the chironomid profundal fauna was studied by comparing chironomid head capsule deposits from different sediment layers. The 14–15 cm level was regarded as relatively unaffected by acid precipitation and therefore used as a control. The total number of capsules decreased, especially the number of Tanytarsinii capsules, from deeper to more superficial layers. Phaenopsectra and Psectrocladius showed a relative increase towards the surface level of the sediment. Probable causes for these changes are discussed.     

硫酸盐对淡水养殖池塘表层底泥微生物的影响

硫酸盐引起的生态学效应已得到了越来越多的关注,但目前关于硫酸盐对养殖池塘底泥微生物的影响还知之甚少。【目的】探究不同浓度硫酸盐对养殖池塘底泥微生物的影响规律及可能的机制。【方法】本研究利用采集自养殖池塘的底泥和表层水构建了试验系统,研究了加入约0 mg/L （对照组）、30 mg/L （T1处理组）、150 mg/L （T2处理组）、500 mg/L （T3处理组） Na₂SO₄后表层底泥微生物的丰度、多样性、组成和共生网络的变化规律,并分析了环境影响因素。【结果】孵育第30天前,各实验组底泥微生物变化不大;但到第50天时,T2和T3处理组微生物丰度和多样性相比对照组均明显下降。相比其他实验组,T1处理组酸杆菌门（Acidobacteriota）、拟杆菌门（Bacteroidota）相对丰度出现显著升高（P<0.05）,T3处理组变形菌门（Proteobacteria）和放线菌门（Actinobacteriota）相对丰度出现显著升高（P<0.05）。与对照组相比,T1处理组增加了较多差异类群（62种）,而T3处理组差异类群大量减少（45种）。共生网络图分析显示硫酸盐浓度的增加引起了底泥微生物网络复杂性的增加,说明微生物群落可能通过自身的调节来响应硫酸盐引起的环境改变。冗余分析（redundant analysis,RDA）和相关性分析揭示底泥总有机碳、总氮和氧化还原电位是影响底泥微生物的主要环境因素,提示底泥微生物可能受到硫酸盐和有机质作用的影响。【结论】较长时间的高浓度硫酸盐会对池塘底泥微生物群落造成重要影响,微生物群落自身的转变和硫酸盐引起的有机质分解改变可能是造成微生物群落变化的关键因素。     

The ocellate river stingray (Potamotrygon motoro) exploits vortices of sediment to bury into the substrate

Particle image velocimetry and video analysis were employed to determine the pectoral-fin mechanism used by the stingray Potamotrygon motoro to bury into sand. Rapid oscillations of the body and folding motions of the posterior portion of the pectoral fin suspended sediment beneath the pectoral disc and directed vortices of sediment onto the dorsal surface, where they dissipated and the sediment settled. Body coverage was increased by increased fin displacement and speed and also by the occasional collision of vortices that redirected sediment flow towards the head and tail.