DUGONG (DUGONG DUGON) ABUNDANCE ALONG THE ANDAMAN COAST OF THAILAND

In 2000 and 2001, dugong abundance was estimated using aerial surveys in three provinces along the Andaman coast of Thailand. A microlite aircraft was used to fly aerial transects over seagrass areas. All surveys were done during rising tides as the dugongs came to the seagrass beds to feed. The largest population was found in Trang province. In Trang, the total number of sightings during 22 surveys was 264, out of which 31.5% were single dugongs. The largest group seen in 2000 was 30, and in 2001, 53. The maximum number of calves seen in one day was 13. The best minimum estimate of population abundance is 123 animals (CV = 60.8%) in Trang province. Higher numbers of dugong sightings and group sizes corresponded with higher tides until water turbidity impeded sightings after the highest spring tide. In other areas the number of animals seen was too small for population estimates.     

海南省儒艮资源现状调查

为拟在海南省建立儒艮自然保护区提供科学依据,于2001 年11 月至2002 年10 月在海南省西部沿岸海域进行了为期一年的海洋环境综合调查和儒艮海上目视调查。此外还在海南省及广西壮族自治区、广东省进行了有关访问调查。调查结果表明,在广西沿岸合浦海域仍有儒艮存在。但在海南省西海域近岸未发现儒艮,且原有儒艮栖息地的海草均被破坏消失,认为目前建立海南儒艮自然保护区的条件尚不成熟。儒艮资源减少的主要原因是受人类活动加剧的影响,以及生态环境不断恶化,威胁着本种的生存。为此,亟待采取有效的管理措施和健全管理机制,加强对儒艮资源及其栖息地的保护。     

Unmanned Aerial Vehicles (UAVs) for Surveying Marine Fauna: A Dugong Case Study

Aerial surveys of marine mammals are routinely conducted to assess and monitor species’ habitat use and population status. In Australia, dugongs (Dugong dugon) are regularly surveyed and long-term datasets have formed the basis for defining habitat of high conservation value and risk assessments of human impacts. Unmanned aerial vehicles (UAVs) may facilitate more accurate, human-risk free, and cheaper aerial surveys. We undertook the first Australian UAV survey trial in Shark Bay, western Australia. We conducted seven flights of the ScanEagle UAV, mounted with a digital SLR camera payload. During each flight, ten transects covering a 1.3 km² area frequently used by dugongs, were flown at 500, 750 and 1000 ft. Image (photograph) capture was controlled via the Ground Control Station and the capture rate was scheduled to achieve a prescribed 10% overlap between images along transect lines. Images were manually reviewed post hoc for animals and scored according to sun glitter, Beaufort Sea state and turbidity. We captured 6243 images, 627 containing dugongs. We also identified whales, dolphins, turtles and a range of other fauna. Of all possible dugong sightings, 95% (CI = 90%, 98%) were subjectively classed as ‘certain’ (unmistakably dugongs). Neither our dugong sighting rate, nor our ability to identify dugongs with certainty, were affected by UAV altitude. Turbidity was the only environmental variable significantly affecting the dugong sighting rate. Our results suggest that UAV systems may not be limited by sea state conditions in the same manner as sightings from manned surveys. The overlap between images proved valuable for detecting animals that were masked by sun glitter in the corners of images, and identifying animals initially captured at awkward body angles. This initial trial of a basic camera system has successfully demonstrated that the ScanEagle UAV has great potential as a tool for marine mammal aerial surveys.     

CURRENT STATUS AND CONSERVATION NEEDS OF DUGONGS IN SOUTHERN JAPAN

We conducted aerial surveys of dugongs ( Dugong dugon ) using the line-transect method and snorkeling surveys of dugong feeding trails in 1998 and 1999 around Okinawa Island (26°30'N, 128°00'E) and the Sakishima Islands, southern Japan. A total of ten dugongs were sighted and feeding trails were confirmed in the sea grass beds off the east coast of Okinawa Island. In the Sakishima Islands, however, no dugongs were observed, and there was no evidence of feeding trails despite the existence of apparently suitable sea grass beds for feeding. The results of these surveys and other available information suggest that Okinawan dugongs represent a small, geographically isolated population. Our sightings of dugongs during the daytime, offshore of sea grass beds where feeding trails were recorded, suggest that Okinawan dugongs principally feed at night when human activities are limited. Survival of this remnant dugong population is threatened by habitat degradation and occasional entanglement mortality in fishing nets.     

Pleistocene sea level fluctuations and the phylogeography of the dugong in Australian waters

We investigated phylogeography, demography, and population connectivity of the dugong (Dugong dugon) in Australian waters using mitochondrial control region DNA sequences from 177 Australian dugongs and 11 from elsewhere. The dugong is widespread in shallow Indo‐West Pacific waters suitable for growth of its main food, seagrass. We hypothesized that the loss of habitat and creation of a land barrier (the Torres Strait landbridge) during low sea level stands associated with Pleistocene glacial cycles have left a persisting genetic signature in the dugong. The landbridge was most recently flooded about 7,000 yr ago. Individual dugongs are capable of traveling long distances, suggesting an alternative hypothesis that there might now be little genetic differentiation across the dugong's Australian range. We demonstrated that Australian dugongs fall into two distinct maternal lineages and exhibit a phylogeographic pattern reflecting Pleistocene sea‐level fluctuations. Within each lineage, genetic structure exists, albeit at large spatial scales. We suggest that these lineages diverged following the last emergence of the Torres Strait landbridge (ca. 115 kya) and remained geographically separated until after 7 kya when passage through Torres Strait again became possible for marine animals. Evidence for population growth in the widespread lineage, especially after the last glacial maximum, was detected.     

AERIAL SURVEYS FOR COASTAL DOLPHINS: ABUNDANCE OF HECTOR'S DOLPHINS OFF THE SOUTH ISLAND WEST COAST, NEW ZEALAND

Line-transect surveys of abundance depend critically on the estimation of detection probability, which includes corrections for availability and visibility. In this aerial line-transect survey for Hector's dolphin ( Cephalorhynchus hectori ) we recorded dive times from a helicopter to estimate the proportion of time that dolphins could be seen at or near the water surface and were therefore "available" to be counted. The proportion of available sightings that were counted on transect lines was estimated by comparing sightings by two independent teams of two observers in the fixed-wing plane. The survey covered the area between Farewell Spit and Milford Sound, off the west coast of the South Island of New Zealand. Survey effort was stratified according to existing distribution data. A total of 142 separate sightings was made on 1,355 km of trackline. Average availability for fifty Hector's dolphin groups observed from the helicopter (161 dive/surface cycles) was 46.3% (CV = 4.2%). Data from the two independent observer teams indicated that 96.2% (CV = 2.3%) of the dolphin groups that were at the surface and on the trackline were seen. The abundance estimate for the South Island west coast, corrected for visibility and availability, was 5,388 Hector's dolphins (CV = 20.6%). The total population estimate for South Island Hector's dolphins is 7,270 (CV = 16.2%).     

Dugong habitat use in relation to seagrass nutrients,tides, and diel cycles

The dugong is the only herbivorous mammal that is strictly marine and a seagrass community specialist. The pasture available to the dugong varies with the tides because seagrass occurs in both intertidal and subtidal areas. We GPS-tracked seven dugongs within a 24 km², intensively used seagrass habitat in subtropical Australia in winter. We modeled resource selection within the habitat by comparing the dugongs’ use of space with the distribution of seagrass in an area defined using the combined space-use of the tracked animals. Selection by dugongs for seagrass quantity (biomass) and quality (nutrients) was analyzed within six time/tide combinations to examine the influences of tidal periodicity and the diel cycle on resource selection. Dugong habitat use was consistently centered over seagrass patches with high nitrogen concentrations, except during the day at low tides when the animals had fewer habitat choices and their space use was centered over high seagrass biomass. The association of dugongs with seagrass high in starch was positive during both day and night high tides when the animals could access the intertidal areas where seagrass biomass was generally low. Associations between dugongs and seagrass species were less definite, reflecting the potential for dugongs to exploit several species. Our model of dugong resource selection suggests that nitrogen is the primary limiting nutrient for dugong populations and also confirms the preference of dugongs for high-energy foods.     

Reconstructing historical baselines for the Persian/Arabian Gulf Dugong,Dugong dugon (Mammalia: Sirena)

Retrospective estimates of historic abundances and distributions of marine organisms are crucial to understanding the anthropogenic impacts on the structure and species of coastal ecosystems, especially in the case of vulnerable species such as the Dugong (Dugong dugon). The Persian/Arabian Gulf is home to the second largest Dugong population in the world, yet little is known about their current or past abundance, distribution, and ecological role. Here, we examine historical changes in dugong distribution and estimate perceived changes in their abundance. We create a ‘dugong discovery curve’ and compile global density estimates as proxies for the overall health of the population in the Gulf. We find that since 1950 dugong range may have contracted by one quarter, and despite their large population, their overall densities in the Gulf are far lower than in other areas within their range. Basic understanding of historical trajectories for Dugongs is needed in order to develop appropriate management plans and conservation targets, particularly in light of large and wide-spread coastal development projects in the region.     

Long-Term Occupancy Trends in a Data-Poor Dugong Population in the Andaman and Nicobar Archipelago

Prioritizing efforts for conserving rare and threatened species with limited past data and lacking population estimates is predicated on robust assessments of their occupancy rates. This is particularly challenging for elusive, long-lived and wide-ranging marine mammals. In this paper we estimate trends in long-term (over 50years) occupancy, persistence and extinction of a vulnerable and data-poor dugong (Dugong dugon) population across multiple seagrass meadows in the Andaman and Nicobar archipelago (India). For this we use hierarchical Bayesian dynamic occupancy models accounting for false negatives (detection probability<1), persistence and extinction, to two datasets: a) fragmentary long-term occurrence records from multiple sources (1959–2004, n = 40 locations), and b) systematic detection/non-detection data from current surveys (2010–2012, n = 57). Dugong occupancy across the archipelago declined by 60% (from 0.45 to 0.18) over the last 20 years and present distribution was largely restricted to sheltered bays and channels with seagrass meadows dominated by Halophila and Halodule sp. Dugongs were not found in patchy meadows with low seagrass cover. In general, seagrass habitat availability was not limiting for dugong occupancy, suggesting that anthropogenic factors such as entanglement in gillnets and direct hunting may have led to local extinction of dugongs from locations where extensive seagrass meadows still thrive. Effective management of these remnant dugong populations will require a multi-pronged approach, involving 1) protection of areas where dugongs still persist, 2) monitoring of seagrass habitats that dugongs could recolonize, 3) reducing gillnet use in areas used by dugongs, and 4) engaging with indigenous/settler communities to reduce impacts of hunting.     

Fine scale population structure of dugongs (Dugong dugon) implies low gene flow along the southern Queensland coastline

Populations of marine mammals can show the signature of phylogeographical breaks and restricted connectivity despite the apparent lack of physical boundaries in the marine environment and their high dispersal abilities. Dugongs (Dugong dugon) do not appear to undertake regular migrations but may show localised movement related to water temperature or seagrass availability. Previous mitochondrial DNA studies suggested that despite a strong phylogeographic break in the Torres Strait, there is local panmixia in Australian waters. In this study, we conducted a comprehensive study of the four major dugong populations in southern Queensland. We analysed genotypes of 1,293 dugongs based on 24 microsatellite loci from the four major dugong locations in the region (from south to north): Moreton Bay, Great Sandy Straits, Hervey Bay and Shoalwater Bay. Diversity levels were similar across locations (observed heterozygosity 0.48–0.52, allelic richness 4.3–4.5). There was low but significant population differentiation in southern Queensland (F_ST ranged from 0.005 to 0.040 and Jost’s D_EST ranged from 0.001 to 0.031 for microsatellite data). Bayesian clustering analysis implemented in STRUCTURE largely distinguished the southern Moreton Bay population from the three more northern populations. Twelve mitochondrial control region haplotypes identified from a subset of 182 samples confirmed significant population structuring (F_ST ranged from 0.16 to 0.28). These data suggested that the frequency and extent of dugong movements are insufficient to disrupt the long-term existence of at least two breeding populations in southern Queensland.     

Informing species conservation at multiple scales using data collected for marine mammal stock assessments

Background

Conservation planning and the design of marine protected areas (MPAs) requires spatially explicit information on the distribution of ecological features. Most species of marine mammals range over large areas and across multiple planning regions. The spatial distributions of marine mammals are difficult to predict using habitat modelling at ecological scales because of insufficient understanding of their habitat needs, however, relevant information may be available from surveys conducted to inform mandatory stock assessments.

Methodology and Results

We use a 20-year time series of systematic aerial surveys of dugong (Dugong dugong) abundance to create spatially-explicit models of dugong distribution and relative density at the scale of the coastal waters of northeast Australia (∼136,000 km²). We interpolated the corrected data at the scale of 2 km * 2 km planning units using geostatistics. Planning units were classified as low, medium, high and very high dugong density on the basis of the relative density of dugongs estimated from the models and a frequency analysis. Torres Strait was identified as the most significant dugong habitat in northeast Australia and the most globally significant habitat known for any member of the Order Sirenia. The models are used by local, State and Federal agencies to inform management decisions related to the Indigenous harvest of dugongs, gill-net fisheries and Australia''s National Representative System of Marine Protected Areas.

Conclusion/Significance

In this paper we demonstrate that spatially-explicit population models add value to data collected for stock assessments, provide a robust alternative to predictive habitat distribution models, and inform species conservation at multiple scales.     

Response of dugongs to boat traffic: The risk of disturbance and displacement

Disturbance from boats has been documented for many species of marine mammals, especially cetaceans, but has never been quantified for dugongs. Dugongs depend on seagrass for food. This food mostly occurs in shallow coastal areas where boat traffic is high. Thus there is potential for boats to alienate dugongs from critical habitat areas. Using an overhead video observation system (‘blimp-cam’), we observed the behaviour of focal dugongs during controlled boat pass experiments and while no boats were present. The percentage of time focal dugongs spent feeding and travelling was unaffected by boat presence, the number of boat passes and whether a pass included a stop and restart (pass continuity). The duration, distance and direction of a focal dugong's subsurface behaviour were unaffected by number, continuity or distance of boat passes. However, focal dugongs were less likely to continue feeding if the boat passed within 50 m, than if the boat passed at a greater distance. Mass movements of dugong feeding herds in response to experimental and opportunistically observed boats were timed on 42 occasions but only lasted an average of 122 s. These movements occurred in response to boats passing at a range of speeds, and at distances of less than 50 m to over 500 m. The levels of boat traffic we observed may reduce dugongs' feeding time budget by a maximum of 0.8-6%. Thus at present boats appear unlikely to be having a substantive effect on the energy intake of dugong populations at our study site on the Moreton Banks near Brisbane, Australia. However, boat traffic is likely to increase in this fast growing region, raising concern about the future impact of boats on this and other dugong populations.     

Seagrass Herbivory Levels Sustain Site-Fidelity in a Remnant Dugong Population

Herds of dugong, a largely tropical marine megaherbivore, are known to undertake long-distance movements, sequentially overgrazing seagrass meadows in their path. Given their drastic declines in many regions, it is unclear whether at lower densities, their grazing is less intense, reducing their need to travel between meadows. We studied the effect of the feeding behaviour of a small dugong population in the Andaman and Nicobar archipelago, India to understand how small isolated populations graze seagrasses. In the seven years of our observation, all recorded dugongs travelled either solitarily or in pairs, and their use of seagrasses was limited to 8 meadows, some of which were persistently grazed. These meadows were relatively large, contiguous and dominated by short-lived seagrasses species. Dugongs consumed approximately 15% of meadow primary production, but there was a large variation (3–40% of total meadow production) in consumption patterns between meadows. The impact of herbivory was relatively high, with shoot densities c. 50% higher inside herbivore exclosures than in areas exposed to repeated grazing. Our results indicate that dugongs in the study area repeatedly graze the same meadows probably because the proportion of primary production consumed reduces shoot density to levels that are still above values that can trigger meadow abandonment. This ability of seagrasses to cope perhaps explains the long-term site fidelity shown by individual dugongs in these meadows. The fact that seagrass meadows in the archipelago are able to support dugong foraging requirements allows us to clearly identify locations where this remnant population persists, and where urgent management efforts can be directed.     

Bathymetric zonation of modern microborers in dead coral substrates from New Caledonia—Implications for paleodepth reconstructions in Holocene corals

Microboring endoliths were studied in dead modern corals collected at various depths and in growth position on La Surprise atoll in New Caledonia. Eight taxa of microborers were regularly observed: three cyanobacteria (Hyella caespitosa, Mastigocoleus testarum, and Plectonema terebrans), two chlorophytes (Ostreobium quekettii and Phaeophila dendroides) and three fungal forms (Dodgella priscus, and two unidentified fungi). The relative abundance of each taxon was determined in the modern corals throughout the studied sampling interval (from 0 down to 40 m water depth). This allowed us to propose for the first time a bathymetric model based on microendolith assemblages colonizing in situ hard-substrates of corals. In this model, the occurrence of the cyanobacteria Hyella and Mastigocoleus indicates a bathymetric range from 0 down to a water depth of 3 and 6 m respectively. The chlorophyta O. quekettii, associated with the cyanobacterium P. terebrans and fungi, is dominant from 10 to 40 m depth, which is the lower limit of our sampling. The distribution ranges of individual taxa observed in the dead coral substrates from New Caledonia are much narrower than those reported in the literature for other substrates.The bathymetric model based on distribution of microborers in modern corals was then applied to interpret the trace assemblages of microborers observed in Holocene corals collected by drilling on two reef sites of New Caledonia : La Surprise islet, in the vicinity of the sampling sites of the modern corals, and the barrier reef of Bayes, on the NE coast of Grande Terre. The paleodepth interpretations performed at various levels along the cores allow identification of several shallowing-upward sequences during the last 7000 years of reef growth in New Caledonia. Differences in the thickness of these sequences between La Surprise and Bayes sites were interpreted as differences in the space available for accommodation between the two sites, in turn related to the differential subsidence that affected New Caledonia during Holocene times. The use of the microendolith trace assemblages in paleodepth reconstructions of Holocene reefs from New Caledonia allowed detection of relative sea level variations finer than those deduced from changes in coralgal assemblages.     

Does Herbivorous Fish Protection Really Improve Coral Reef Resilience? A Case Study from New Caledonia (South Pacific)

Parts of coral reefs from New Caledonia (South Pacific) were registered at the UNESCO World Heritage list in 2008. Management strategies aiming at preserving the exceptional ecological value of these reefs in the context of climate change are currently being considered. This study evaluates the appropriateness of an exclusive fishing ban of herbivorous fish as a strategy to enhance coral reef resilience to hurricanes and bleaching in the UNESCO-registered areas of New Caledonia. A two-phase approach was developed: 1) coral, macroalgal, and herbivorous fish communities were examined in four biotopes from 14 reefs submitted to different fishing pressures in New Caledonia, and 2) results from these analyses were challenged in the context of a global synthesis of the relationship between herbivorous fish protection, coral recovery and relative macroalgal development after hurricanes and bleaching. Analyses of New Caledonia data indicated that 1) current fishing pressure only slightly affected herbivorous fish communities in the country, and 2) coral and macroalgal covers remained unrelated, and macroalgal cover was not related to the biomass, density or diversity of macroalgae feeders, whatever the biotope or level of fishing pressure considered. At a global scale, we found no relationship between reef protection status, coral recovery and relative macroalgal development after major climatic events. These results suggest that an exclusive protection of herbivorous fish in New Caledonia is unlikely to improve coral reef resilience to large-scale climatic disturbances, especially in the lightly fished UNESCO-registered areas. More efforts towards the survey and regulation of major chronic stress factors such as mining are rather recommended. In the most heavily fished areas of the country, carnivorous fish and large targeted herbivores may however be monitored as part of a precautionary approach.     

Mechanical disruption of seagrass in the digestive tract of the dugong

The cheek teeth in dugongs are considered to be largely non-functional whereas the oral horny pads are important both in mechanical disruption of the diet and in conveying seagrass through the mouth. Particle size distributions of digesta from 41 dead stranded dugongs were examined to investigate the relationship between degree of food breakdown, gut region and functional surface area of the mouthparts. The in vitro ease of fracture of major dietary seagrass species were compared. The rate of food breakdown through the gut appears to be more closely linked to fibre level of the diet than to size or age of the dugong and its mouthparts. Low fibre seagrass, for example Halophila ovalis , breaks down at a faster rate than high fibre seagrass, for example Zostera capricorni both in dugong guts and in vitro . Several structural characteristics of seagrass, including level and arrangement of fibre, and water content, make it particularly amenable to mechanical breakdown. The soft mouthparts of the dugong are highly modified so that the entire oral cavity functions to crush low fibre seagrasses. Thus, the dugong has developed an efficient method of food ingestion and mastication that is suited to processing large quantities of soft seagrass during short dive times. The potential cost to the dugong in having lost its hard dental surfaces is that it has become restricted to a low fibre diet.     

Improving population estimates by quantifying diving and surfacing patterns: A dugong example

Diving animals are available for detection from above the water when environmental conditions are favorable and the animals are near the surface. The number of animals that are unavailable for detection needs to be estimated to obtain unbiased population estimates. The current availability correction factors used in aerial surveys for the dugong (Dugong dugon) allow for variation in environmental conditions but use the average time dugongs spend near the surface (i.e., constant availability corrections). To improve availability estimates, we examined location and dive data from nine dugongs fitted with satellite telemetry units and time‐depth recorders (TDRs) in eastern Australia. The effects of water depth, tidal conditions, and habitat types on dugong surfacing time were examined using generalized linear mixed models (GLMMs). We found that availability for detection differed with water depth, and depth‐specific availability estimates were often lower than the constant estimates. The habitat effect was less influential, and there was no tidal effect. The number of dugongs estimated using depth‐specific availabilities were higher than those obtained using constant availabilities across water depth. Hence, information on water depth can refine availability estimates and subsequent abundance estimates from dugong aerial surveys. The methodology may be applicable to other aquatic wildlife.     

Older than New Caledonia emergence? A molecular phylogenetic study of the eneopterine crickets (Orthoptera: Grylloidea)

Aim A New Caledonian insect group was studied in a world‐wide phylogenetic context to test: (1) whether local or regional island clades are older than 37 Ma, the postulated re‐emergence time of New Caledonia; (2) whether these clades show evidence for local radiations or multiple colonizations; and (3) whether there is evidence for relict taxa with long branches in phylogenetic trees that relate New Caledonian species to geographically distant taxa. Location New Caledonia, south‐west Pacific. Methods We sampled 43 cricket species representing all tribes of the subfamily Eneopterinae and 15 of the 17 described genera, focusing on taxa distributed in the South Pacific and around New Caledonia. One nuclear and three mitochondrial genes were analysed using Bayesian and parsimony methods. Phylogenetic divergence times were estimated using a relaxed clock method and several calibration criteria. Results The analyses indicate that, under the most conservative dating scenario, New Caledonian eneopterines are 5–16 million years old. The largest group in the Pacific region dates to 18–29 Ma. New Caledonia has been colonized in two phases: the first around 10.6 Ma, with the subsequent diversification of the endemic genus Agnotecous, and the second with more recent events around 1–4 Ma. The distribution of the sister group of Agnotecous and the lack of phylogenetic long branches in the genus refute an assumption of major extinction events in this clade and the hypothesis of local relicts. Main conclusions Our phylogenetic studies invalidate a simple scenario of local persistence of this group in New Caledonia since 80 Ma, either by survival on the New Caledonian island since its rift from Australia, or, if one accepts the submergence of New Caledonia, by local island‐hopping among other subaerial islands, now drowned, in the region during periods of New Caledonian submergence.