The changing view of Dna2

Comment on: Budd ME, et al. Cell Cycle 2011; 10:1690-8.     

The Effect of Decalcification and Choice of Fixative on Histiocytic Iron in Bone Marrow Core Biopsies

Iron stains are often used for bone marrow core biopsies obtained by needle biopsy of the iliac crest. Because bone most be decalcified by brief treatment with acid, it is possible that an undetermined amount of stainable histiocytic iron may be lost. A study was carried out to determine whether decalcification results in loss of histiocytic iron and the effects of fixatives and the recovery of histiocytic iron in decalcified bone marrow tissue. Aspirates of bone marrow were stained for iron with Prussian blue. Because aspirate material does not require decalcification, it served as a control for the study. One hundred bone marrow biopsies and accompanying aspirates from 100 adult subjects were evaluated. Fifty bone marrow biopsies were fixed using a fixative containing mercuric chloride (B-5) and the remaining 50 were fixed in zinc-formalin. Histiocytic iron was graded as minimal, moderate or marked depending on whether less than 5, 6-10, or more than 10 iron positive histiocytes, respectively, were observed. When histiocytic iron was markedly present in aspirate material, at least moderate amounts of stainable iron were found in 22 of 25 B-5 fixed and 21 of 25 zinc-formalin fixed decalcified bone marrow. When aspirate histiocytic iron was minimal or moderate, 14 of 25 B-5 fixed and 7 of 25 zinc-formalin fixed decalcified bone marrow specimens revealed histiocytic iron. Decalcification results in decreased recovery of stainable iron, and where histiocytic iron is minimally or moderately present, B-5 fixation results in greater postdecalcification recovery. There was no significant difference in recovery when larger quantities of histiocytic iron were present prior to the decalcification step.     

Effect of Trifluoperazine On Dna Synthesis During Liver Regeneration

Abstract. An intraperitoneal injection of the calcium-calmodulin blocker trifluoperazine into rats at 4 hr after a partial hepatectomy produced a strong inhibition of DNA synthesis observed at 24 hr after surgery; but when injection was administered at 20 hr after hepatectomy, it did not produce any effect on DNA replication. These observations indicate that trifluoperazine acted by blocking one or more events involved in triggering DNA replication but it did not affect on-going DNA synthesis. A more detailed study indicated that when trifluoperazine was injected at 4 hr after surgery, a 12 hr delay in the cytosolic calmodulin surge observed between 6 and 12 hr after partial hepatectomy (previous to initiation of DNA replication) and also in the starting of DNA synthesis was produced. These findings suggest that the pre-replicative surge of cytosolic calmodulin could be involved in triggering DNA synthesis observed after partial hepatectomy.     

Microspectrophotometric analysis of malarial pigment

The absorption spectra of pigment granules in erythrocytes infected with Plasmodium vivax were examined by microspectrophotometry. Our investigations show that individual pigment granules in infected erythrocytes are different and that gradual transitional stages are found from hemoglobin to a compound with a symmetric absorption spectrum with a maximum at 442 nm. This compound is likely to be the “pure” malaria pigment. The exact nature of this pigment is not clear from the absorption curves; it is certainly not chemically pure hematin or bilirubin.     

Silver Staining of Bone Prior to Decalcification for Quantitative Determination of Osteoid in Sections

Slices, 1-2 mm thick, of alcohol-fixed bone are immersed in 2% aqueous AgNO₃ in the dark for 48 hr. After thorough washing in running tap water, the silver phosphate formed at the interface of osteoid and calcified bone is reduced to a black deposit by 5% aqueous sodium hypophosphite containing 0.1 N NaOH, 0.2 ml/100 ml. The blocks are then immersed in 5% aqueous Na₂S₂O₃ and after further washing pass through a routine formic acid decalcification and paraffin wax embedding schedule. Sections cut at 5 μ thickness and counterstained with Van Gieson's picrofuchsin show a clear differentiation between osteoid tissue and the outer limit of calcification in trabecular or cortical bone, thus making them suitable for quantitative studies. The main advantage of the method is the production of intact stained sections without specialised embedding or cutting techniques.     

The Use of a Cation Exchange Resin in Decalcification

Decalcification of 2-3 mm. sections of human ribs by 5-40% concentrations of both formic and nitric acid was subjected to a controlled study. The effect of adding 1 g. of phloroglucinol and of 2.5, 5 and 10 g. of the exchange resin (Win-3000) per 100 ml. of decalcifying solution was observed after staining celloidin sections with hematoxylin and Triosin or with Giemsa stain. Electrolytically decalcified material was included for comparison also. The following conclusions were drawn: (1) The addition of resin did not appreciably shorten the decalcification time nor enhance tissue preservation and staining qualities. (2) Formic acid, 20% or less, gave results superior to nitric acid in any concentration and also superior to those obtained after the electrolytic method. (3) The addition of 1% phloroglucinol to formic acid solution improved both preservation and staining. (4) Helly's fluid fixation with all combinations gave uniformly better results than formalin fixation.     

An Improved Method of Decalcification

Following several experimental investigations, an improved method of decalcification has been devised. The principle of this decalcification method is to obtain complete decalcification by a mixture of as high pH as possible without diminishing the stainability of the Nissl-granules (with Einarson's progressive staining method by means of gallocyanin). This is accomplished by the help of a buffer solution of equal parts of 8 N formic acid and 1 N sodium formate (pH 2.2). After-treatment consists only in rinsing in flowing water for 24 hours. Dehydration is in alcohol (70%, 96%, 100%); cedar oil; ligroin. Embedding in paraffin follows.     

An Improved Method of Decalcification

Following several experimental investigations, an improved method of decalcification has been devised. The principle of this decalcification method is to obtain complete decalcification by a mixture of as high pH as possible without diminishing the stainability of the Nissl-granules (with Einarson's progressive staining method by means of gallocyanin). This is accomplished by the help of a buffer solution of equal parts of 8 N formic acid and 1 N sodium formate (pH 2.2). After-treatment consists only in rinsing in flowing water for 24 hours. Dehydration is in alcohol (70%, 96%, 100%); cedar oil; ligroin. Embedding in paraffin follows.     

脱钙对鼠颅骨标本中肥大细胞组织化学与免疫组织化学染色的影响

目的:探讨脱钙对鼠颅骨标本中肥大细胞组织化学与免疫组织化学染色影响.方法:用不同脱钙液处理小鼠颅骨标本,组织切片后进行苏木素一伊红染色、甲苯胺蓝染色、醛品红染色以及免疫组织化学染色.结果:经过不同脱钙液处理后的颅骨组织切片组织结构保存完好,肥大细胞的组织化学染色(甲苯胺蓝和醛品红染色),及肥大细胞中胰蛋白酶的免疫组织化学染色清晰.结论:不同脱钙液(8%盐酸脱钙液、EDTA脱钙液、混合酸脱钙液)处理不影响鼻腔粘膜中肥大细胞的组织化学和免疫组织化学染色.     

Decalcification at the Mantle-Shell Interface in Molluscs

Decalcification at the mantle-shell interface in Mercenariatnercenaria was studied through the changes in the chemicalcomposition of the extrapallial fluid, and by the measurementof Ca⁴⁵-deposition and solution. Measurements of O₂-tensiondemonstrated that the clam was anaerobic soon after the valveswere closed. Measurements of calcium, carbon dioxide, and hydrogenion concentration showed that all of these components of theextrapallial fluid increase with increasing time of closure.These measurements, and measurements of calcium and succinicacid in the tissues and fluids of the clam, indicated thatsuccinicacid produced by the anaerobic metabolism of the clam was neutralizedby the dissolution of previously deposited shell.     

Pattern of Dna Synthesis and Its Effect On the Classification of Cells By Flow Cytometry

A flow cytometer produces a DNA distribution which contains information about the proportions of cells in various phases of the cell cycle. In this report we show that the form assumed for the rate of DNA synthesis in a cell plays an important part in the estimation of those proportions. We compare three forms for the rate of DNA synthesis, one of which is derived from knowledge of the mechanism of DNA replication, and find that they give substantially different estimates of the proportions of cells in the G₁ and G₂+ M phases.     

Control of the Endpoint of Decalcification by Fluoroscopy

Abstact

The control of the endpoint of decalcification of histological specimens can be done by X-ray fluoroscopy. An X-ray machine is mounted under the table in the laboratory. A leaden tube leads from the X-ray machine and is closely adapted to a hole in the table. The opening on the table surface is covered with a 5 mm. thick plastic plate on which is placed the object to be examined. The object is observed in a regular fluoroscope. All precautions to prevent direct and indirect X-ray irradiation of the observer should be taken.     

Dna Sequencing After the Human Genome Project

Abstract

In future DNA sequencing, gel electrophoresis, which is particularly effective for de novo sequencing, is likely to be replaced by sequencing by hybridization, mass spectrometry, or combinations of these two methods, which are particularly effective for comparative or diagnostic sequencing.     

The Ambivalent Role of Glutathione in the Protection of Dna Against Singlet Oxygen

Glutathione (GSH) was examined with respect to its ability to protect DNA against ¹O₂ damage. We have found that GSH protected, at least partly, the DNA against inactivation by ¹O₂. Up to 10 mM the protection increased as a function of GSH concentration. Above 10 mM the protection remained constant and less than expected on the basis of scavenging/quenching of ¹O₂, in contrast to the protection offered by sodium-azide. Especially at the higher concentrations of GSH the protection against the biological inactivation is accompanied by an increase in single-strand breaks and also probably lethal base damage. However, all together the data suggest that at least in the physiologically important range (0.1-10 mM) GSH is able to protect efficiently against ¹O₂-induced inactivating DNA damage.